rna9916, rna9916 (mRNA) Nannochloropsis gaditana

Overview
Namerna9916
Unique Namerna9916
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length600
Alignment locationKK037257.1:119159..120121 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102259g1.8952.mrna
Orig protein idgnl|cribi|Naga_102259g1.8952
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:119159..120121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102259g1gene9622Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9916rna9916-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20788.1cds9885Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9916 ID=rna9916|Name=rna9916|organism=Nannochloropsis gaditana|type=mRNA|length=600bp
TCCTATTCGTGCACCCCACTGTAGGCAGGCTCGGACGTGAAAGCAGTGAA
ACACGTTCTCGCGGTGTTTCAGGGATAGCACAGAGCACCCACGACGCAGG
CATTGGGGCACCGTACAGTCTATTAGGGCCTGTCAGGAAGGTGCATGCCT
TACACTTCCATGCATCACAGGCACATTCGTGCATTAAGTTGCAGGGAAAA
GGCGTGGGCTACGCCTGGTTCCGGCATGATAAGGAGAGCGATGGGCAGCA
ATAGGAGAGGGAGATCAGGGCGCCCACCGCTTCTCTCGCTTGTTCTCCTC
CTTCTGCTCTTTACCATATTGCCGTTTGTGGAAGGAGGCATCTATGGTTT
TTGGAAGTGGTTTCGAGGGCATTACAAGGAAGTCGTTTCCAAAGTGAGCA
GCGAGCAGTACGCGGAGTTCGACCACGTCCTCATTGATGTCAATCAGGTA
GATTAAATGGAGGGGAGGGGGGGCGGGGGGGAAGGAAGGGGGGGAGGAAG
GGGCATTAATTTTAAGGCCATAGTCGCTTCGAGCTCTCTCGTCTCTCGAC
TTGTGTTTTTCGACAATATACACTCTGTTGTGTTTGGAAACTCCCATCAA
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protein sequence of rna9916

>rna9916-protein ID=rna9916-protein|Name=rna9916|organism=Nannochloropsis gaditana|type=polypeptide|length=169bp
DISALCPGGEESVQSPFCPLRLGGVLPLPPSLPPTFPPSFPSSFSASAWT
ATLTLEEKRFTLSEPQPTMKAAKQAICELVLKEVVPEAYATYFPASVDGK
DGREGGREGGEEGKTRTRAERRRVENGRVDEKQELGRRGGDGHVKSDGSW
RPQYTPVPSEHENAGGKGR
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mRNA from alignment at KK037257.1:119159..120121+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9916 ID=rna9916|Name=rna9916|organism=Nannochloropsis gaditana|type=mRNA|length=963bp|location=Sequence derived from alignment at KK037257.1:119159..120121+ (Nannochloropsis gaditana)
GATATCTCAGCATTGTGCCCAGGTGGAGAAGAATCTGTTCAAAGCCCTTT
TTGCCCACTGCGTCTCGGGGGGgttctgcccctccctccctccctccctc
ccaccttccctccctccttcccctcctccttctcagcctcAGCGTGGACT
GCGACTCTGACgcttgaagaaaaaagattCACTCTTTCGGAGCCACAGCC
TACCATGAaggtaggggggagggatgggcgagggagagagagagagaaag
ggagggggagggaagtaaaacagggggggagggaaagaggaaagcctTTC
AAAGAGTAAAGGAGGGACTGGAACCatcaagggaaggagggaaaggaaat
tTACATTCAATCGACGCAAAGCAaaccgagagggagggagggaagccaag
aaacgagggagggaaagagggagggagggagggaggaagggagggaggaa
gaggcagaccGTGGCCTGAactttttctcctccgtcacaccgacccctcc
ctcctcttttttccctctctttctctgcctggccccctttcatcctcctc
aggCGGCGAAGCAAGCGATTTGTGAGCTCGtcttgaaggaggtggtgccC
GAGGCCTATGCCACCtacttccccgcctccgtggatgggaaggacggtag
ggagggagggagggagggtggagaagaggggaagacgaggaccagggcag
aaaggaggcgggtggAAAACGGGAGAGTGGATGAAAAGCAGGAGCTAGGa
cgcaggggaggggatggacacGTAAAAAGCGATGGGTCCTGGCGGCCTCA
GTACACTCCGGTTCCTTCTGAGCATGAGAATGCTGGTGGCaaggggaggt
gaagaggggaagaaggtgggtAAGAACACTCACATCCGGGTATCTTGTTG
Gaatttttccctccctggcaggttccgtgggcgaggaggaggaggaggaa
gaggaggaggagg
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Coding sequence (CDS) from alignment at KK037257.1:119159..120121+

>rna9916 ID=rna9916|Name=rna9916|organism=Nannochloropsis gaditana|type=CDS|length=1020bp|location=Sequence derived from alignment at KK037257.1:119159..120121+ (Nannochloropsis gaditana)
GATATCTCAGCATTGTGCCCAGGTGGAGAAGAATCTGTTCAAAGCCCTTT
TTGCCCACTGCGTCTCGGGGGGgttctgcccctccctccctccctccctc
ccaccttccctccctccttcccctcctccttctcagcctcAGCGTGGACT
GCGACTCTGACgcttgaagaaaaaagattCACTCTTTCGGAGCCACAGCC
TACCATGAaggCGGCGAAGCAAGCGATTTGTGAGCTCGtcttgaaggagg
tggtgccCGAGGCCTATGCCACCtacttccccgcctccgtggatgggaag
gacggtagggagggagggagggagggtggagaagaggggaagacgaggac
cagggcagaaaggaggcgggtggAAAACGGGAGAGTGGATGAAAAGCAGG
AGCTAGGacgcaggggaggggatggacacGTAAAAAGCGATGGGTCCTGG
CGGCCTCAGTACACTCCGGTTCCTTCTGAGCATGAGAATGCTGGTGGCaa
ggggaggtgaGATATCTCAGCATTGTGCCCAGGTGGAGAAGAATCTGTTC
AAAGCCCTTTTTGCCCACTGCGTCTCGGGGGGgttctgcccctccctccc
tccctccctcccaccttccctccctccttcccctcctccttctcagcctc
AGCGTGGACTGCGACTCTGACgcttgaagaaaaaagattCACTCTTTCGG
AGCCACAGCCTACCATGAaggCGGCGAAGCAAGCGATTTGTGAGCTCGtc
ttgaaggaggtggtgccCGAGGCCTATGCCACCtacttccccgcctccgt
ggatgggaaggacggtagggagggagggagggagggtggagaagagggga
agacgaggaccagggcagaaaggaggcgggtggAAAACGGGAGAGTGGAT
GAAAAGCAGGAGCTAGGacgcaggggaggggatggacacGTAAAAAGCGA
TGGGTCCTGGCGGCCTCAGTACACTCCGGTTCCTTCTGAGCATGAGAATG
CTGGTGGCaaggggaggtga
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Synonyms
Publications