rna9905, rna9905 (mRNA) Nannochloropsis gaditana

Overview
Namerna9905
Unique Namerna9905
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length374
Alignment locationKK037257.1:97238..97593 -

Link to JBrowse

Properties
Property NameValue
Productdna helicase
Orig transcript idgnl|cribi|Naga_102034g1.1378.mrna
Orig protein idgnl|cribi|Naga_102034g1.1378
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:97238..97593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102034g1gene9612Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9905rna9905-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20799.1cds9874Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9905 ID=rna9905|Name=rna9905|organism=Nannochloropsis gaditana|type=mRNA|length=374bp
CAGGCCGGACCGTCCTCAACCTCTGGCGGTTGATGCGGGGAGAGCTCAAG
CTGAGCATGTACTCGCAAGCCAGCGTTGTGGCCCATGTGCTGAATCGACG
CCACCCCGCGCCTTCCTTCTCCGCCCTCACTGCCTGGTTCGTCCAGGGAG
GGGCAAAAGGCCGGGCCCAGGCCCTCCGCCACGTCCTACAGACCTCCCGC
TTGAACCTGGAGGTGTTGGATCGCCTGGACCTGCTGGGGCGGACGAGCGA
GATGGCGCGGGTCTTCGGCATCGATTTCTTCTCCGTCCTGAACCGGGGGA
GCCAGTACCGAGTGGAAGCAGTGCTTGGGCGGGTCAGCAAGCCATTGGGC
TACGTCGCGCTCTCTCCCAGGTAG
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protein sequence of rna9905

>rna9905-protein ID=rna9905-protein|Name=rna9905|organism=Nannochloropsis gaditana|type=polypeptide|length=101bp
MPPPQIYNASPRSPHIRDGDTPRSPHIRDGDTPRSPHIRDGDTPRSPRIR
DDDTPRSPHIRDGDTPRSPHIRDGDTPPPPPYRPPPTPSSNTRRQAPVAP
P
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mRNA from alignment at KK037257.1:97238..97593-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9905 ID=rna9905|Name=rna9905|organism=Nannochloropsis gaditana|type=mRNA|length=356bp|location=Sequence derived from alignment at KK037257.1:97238..97593- (Nannochloropsis gaditana)
ATGCCTCCACCGCAGATTTACAACGCCTCTCCACGATCTCCACACATTAG
AGATGGCGATACCCCACGATCTCCACACATTAGAGATGGCGATACCCCAC
GATCTCCACACATTAGAGATGGCGATACCCCACGATCTCCACGCATTAGA
GATGACGATACCCCACGATCTCCACACATTAGAGATGGCGATACCCCACG
ATCTCCACACATTAGAGATGGCGATACTCCACCACCTCCTCCCTATCGAC
CACCGCCAACGCCTAGCAGCAACACCCGGTACCCACCGCCGTGGAGGGAG
GAAGAAACAGATCCCTCCCCCTCCAAAGCCGCCAGGCGCCAGTCGCTCCA
CCGTGA
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Coding sequence (CDS) from alignment at KK037257.1:97238..97593-

>rna9905 ID=rna9905|Name=rna9905|organism=Nannochloropsis gaditana|type=CDS|length=612bp|location=Sequence derived from alignment at KK037257.1:97238..97593- (Nannochloropsis gaditana)
CCGCCAGGCGCCAGTCGCTCCACCGTGAATGCCTCCACCGCAGATTTACA
ACGCCTCTCCACGATCTCCACACATTAGAGATGGCGATACCCCACGATCT
CCACACATTAGAGATGGCGATACCCCACGATCTCCACACATTAGAGATGG
CGATACCCCACGATCTCCACGCATTAGAGATGACGATACCCCACGATCTC
CACACATTAGAGATGGCGATACCCCACGATCTCCACACATTAGAGATGGC
GATACTCCACCACCTCCTCCCTATCGACCACCGCCAACGCCTAGCAGCAA
CACCCGCCGCCAGGCGCCAGTCGCTCCACCGTGAATGCCTCCACCGCAGA
TTTACAACGCCTCTCCACGATCTCCACACATTAGAGATGGCGATACCCCA
CGATCTCCACACATTAGAGATGGCGATACCCCACGATCTCCACACATTAG
AGATGGCGATACCCCACGATCTCCACGCATTAGAGATGACGATACCCCAC
GATCTCCACACATTAGAGATGGCGATACCCCACGATCTCCACACATTAGA
GATGGCGATACTCCACCACCTCCTCCCTATCGACCACCGCCAACGCCTAG
CAGCAACACCCG
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Synonyms
Publications