rna9903, rna9903 (mRNA) Nannochloropsis gaditana

Overview
Namerna9903
Unique Namerna9903
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length928
Alignment locationKK037257.1:92405..94029 +

Link to JBrowse

Properties
Property NameValue
Productprefoldin subunit
Orig transcript idgnl|cribi|Naga_100935g1.5897.mrna
Orig protein idgnl|cribi|Naga_100935g1.5897
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:92405..94029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100935g1gene9610Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9903rna9903-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20801.1cds9872Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9903 ID=rna9903|Name=rna9903|organism=Nannochloropsis gaditana|type=mRNA|length=928bp
ATACACCCCTTTCATGGACGTCTAAGCTACATGCGTTTTCCCGTTCCCCG
CCACAATTTCCTCTAACCACCAAAGCCTAGCAAGGAACCAGTCAAACTAA
ATTGAAAGGATGGCGCGTCACGCTCCCTTCACTGTCTTAACCTTCGTCTG
CCTCGTGCTAATGGCCCTCTCCTCCGTCGCCTTCATGCCTGTGCGCCCTG
CCCTTTCTTTGAGTAAAATGCGCGCTGCAACACTCTCGGGACCTTCCTCC
CGCAGCCCTAGCGGCCGCTCCAAGGGACTGACAGCAATGTCTGGGAAATA
CTGGGAGGGAGAATGGGTGTGCGCGGACTGTGGGTACATTTACAACGAAG
CGGATTGCGGCGGGATGCGTTTCGAAGACCAAAAGACGGGCTTCAAATGC
CCGCAATGCTCGGCTCCCCGTCGGCGGTTCGCGAAAAAAGTCGGGGACAA
AATCGGGGTCACCAACGACGGAGGAGACGCGCCCATCCTCGTCTTCTCCA
TCGTGGGAGGCCTGGCGGTGATCGGCTTTGGCATCTACGCGGCCCTTTCC
GGGATTTAAATTTAAACGCACATTTAAATTCAAAAAGAGCGTTACGGAGG
CCTCCTGCAGGCATTTACAAATCCCTCTGGAAGGAGAAAGGACAGGGTTC
AACTCGAGGGGGGCGGCCGTGGCAGGCGAGAAAAATGGCGCGAACGCACG
CACGCCGTCTTGAATGAGAGGGTATGGAGGCATCACATCCATTGCATTGG
ATGTGGTGAGATTGAAAAGATTGAAAAGGATGCCATAGCAGGGCTCCAGA
TAGAAGAAGAGTGGGAGTCTGTGCAGTTGAAAACGGGTCATGTTGGAGAG
GGGGGGACCAGGAGAAGGCTTCTTCAGAGAAATCTGAGAGGAGGAAAAAA
AGAAAACACAAACCACATGACATAGGTC
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protein sequence of rna9903

>rna9903-protein ID=rna9903-protein|Name=rna9903|organism=Nannochloropsis gaditana|type=polypeptide|length=164bp
MASVVGEREIDLSKLSIEQLNQLKTQLGEELETITRHYASLREAQSRLNG
CRTSVNELAPTKNGDEILVPLTQSLYVPGTISDADKVLVDVGTGYYIEKT
LPKAKEYLEKKIAVINTNAESVAQVLTQKEKSLRMVSGYFQKKLMVMSQT
SQARQAQRAAQGMS
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mRNA from alignment at KK037257.1:92405..94029+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9903 ID=rna9903|Name=rna9903|organism=Nannochloropsis gaditana|type=mRNA|length=1625bp|location=Sequence derived from alignment at KK037257.1:92405..94029+ (Nannochloropsis gaditana)
ACAGAAGGTTCTTAAATCCTTAGATCTTTTCACACACACCTTTGTAGCAA
TGAATTTTTCGCACTTGGTGTCGAAGAGCTTCATGTAAAGGCATTTATAA
CCGGGCACGGGTAGCTGACTCTTTGTACCAataacctccttcccacagcA
ACATCAAGCTTCCATAATGGCTTCAGTGGTGGGTGAACGAGAAATCGACT
TGAGCAAACTATCAATAGAGCAGCTGAACCAGCTGAAAACGCAACTGGGA
GAGGTATACAAGGGAGTGTTGGACGTGGAGAGGGTTACGCGAGAACGACT
ACTTCATGCTGCTAAACCCACTTCCCTCATATGTTCACACATCATCCGAG
CCCGCATTTTTCATCGCATCGTAATATACATGCTAACATTTTCTCGAATA
TACCATGAACCccacctccttttcctcagGAGCTGGAGACCATTACGCGG
CACTACGCCTCACTGCGCGAAGCCCAATCCCGGCTGAACGGCTGCCGGAC
CTCTGTCAACGAACTAGCACCTACAAAGAACGGTGAGTAATACTGAATGA
GACGGAACATGCACAAAGCAGCTGCTGGTCCGCGATTGGGTTACCCGTTC
TCTCTTGGTCGGGCGTGGCCTTTCGCTTCAGCttctgtcgtcctccctct
cattcccctcctgccgctcGCCCTAGGTGACGAGATTCTTGTTCCCTTAA
CTCAATCTCTGTACGTCCCTGGCACTATAAGCGACGCGGACAAGGTAGGA
CattggcgggggagggagggaggggggaaggggggggcacgcgtCGCCAA
AGCCACCGTATACCTCTATTCGTATTCCATGACAGTACCGGGGATGAGAG
GTCATGGGGTCGCGCACGGAGAACTCCtcgaaagggagagggaagctgTT
TGGTTGCTGTCGATTTTGTCTTTTACTTGCCTTATTTCCCCTCTATGTAC
ATCTTTGGCGTCcttttttttgtttccatCTGCTCGTGCTTGCccgtttt
cttccccccttcacaCGCATGCGCTTGAACCTACCTTAACACCTACAGGT
CCTTGTGGACGTGGGCACCGGCTACTACATCGAAAAGACACTACCTAAGG
CGAAAGAATACCTGGAGAAAAAGATTGCCGTCATCAACACAAATGCGGAG
TCCGTCGCACAGGTAGGACGAAagctccatttccctccctcccgcccttc
ttccctccttccttccctccctctccttctctgtctccttttcttttctc
tgtcgtacctgccctcccttcccctcaccccccttcgtcacccctccttc
cctccttccggctctccctctttcctttccaggtcCTGACGCAGAAGGAG
AAGTCTCTGCGCATGGTGTCCGGGTACTTTCAAAAGAAACTGATGGTGAT
GAGCCAGACGAGCCAAGCACGGCAAGCGCAACGGGCGGCGCAGGGGATGT
CGTAGAACAGATACAGGaccaggggagggagggagggaggaagggaggga
gggaggggaatggagggaaaaaaggcgtcGACAAACGTGTACTGGAGGAT
GATCGGATGATCTCGCTGTGCCATGGTTGCTTTTTTGATACTGTTTGGTG
GTGCCATTAACGGTCTTCCGTTTAC
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Coding sequence (CDS) from alignment at KK037257.1:92405..94029+

>rna9903 ID=rna9903|Name=rna9903|organism=Nannochloropsis gaditana|type=CDS|length=2475bp|location=Sequence derived from alignment at KK037257.1:92405..94029+ (Nannochloropsis gaditana)
ATGGCTTCAGTGGTGGGTGAACGAGAAATCGACTTGAGCAAACTATCAAT
AGAGCAGCTGAACCAGCTGAAAACGCAACTGGGAGAGGAGCTGGAGACCA
TTACGCGGCACTACGCCTCACTGCGCGAAGCCCAATCCCGGCTGAACGGC
TGCCGGACCTCTGTCAACGAACTAGCACCTACAAAGAACGGTGACGAGAT
TCTTGTTCCCTTAACTCAATCTCTGTACGTCCCTGGCACTATAAGCGACG
CGGACAAGGTCCTTGTGGACGTGGGCACCGGCTACTACATCGAAAAGACA
CTACCTAAGGCGAAAGAATACCTGGAGAAAAAGATTGCCGTCATCAACAC
AAATGCGGAGTCCGTCGCACAGgtcCTGACGCAGAAGGAGAAGTCTCTGC
GCATGGTGTCCGGGTACTTTCAAAAGAAACTGATGGTGATGAGCCAGACG
AGCCAAGCACGGCAAGCGCAACGGGCGGCGCAGGGGATGTCGTAGATGGC
TTCAGTGGTGGGTGAACGAGAAATCGACTTGAGCAAACTATCAATAGAGC
AGCTGAACCAGCTGAAAACGCAACTGGGAGAGGAGCTGGAGACCATTACG
CGGCACTACGCCTCACTGCGCGAAGCCCAATCCCGGCTGAACGGCTGCCG
GACCTCTGTCAACGAACTAGCACCTACAAAGAACGGTGACGAGATTCTTG
TTCCCTTAACTCAATCTCTGTACGTCCCTGGCACTATAAGCGACGCGGAC
AAGGTCCTTGTGGACGTGGGCACCGGCTACTACATCGAAAAGACACTACC
TAAGGCGAAAGAATACCTGGAGAAAAAGATTGCCGTCATCAACACAAATG
CGGAGTCCGTCGCACAGgtcCTGACGCAGAAGGAGAAGTCTCTGCGCATG
GTGTCCGGGTACTTTCAAAAGAAACTGATGGTGATGAGCCAGACGAGCCA
AGCACGGCAAGCGCAACGGGCGGCGCAGGGGATGTCGTAGATGGCTTCAG
TGGTGGGTGAACGAGAAATCGACTTGAGCAAACTATCAATAGAGCAGCTG
AACCAGCTGAAAACGCAACTGGGAGAGGAGCTGGAGACCATTACGCGGCA
CTACGCCTCACTGCGCGAAGCCCAATCCCGGCTGAACGGCTGCCGGACCT
CTGTCAACGAACTAGCACCTACAAAGAACGGTGACGAGATTCTTGTTCCC
TTAACTCAATCTCTGTACGTCCCTGGCACTATAAGCGACGCGGACAAGGT
CCTTGTGGACGTGGGCACCGGCTACTACATCGAAAAGACACTACCTAAGG
CGAAAGAATACCTGGAGAAAAAGATTGCCGTCATCAACACAAATGCGGAG
TCCGTCGCACAGgtcCTGACGCAGAAGGAGAAGTCTCTGCGCATGGTGTC
CGGGTACTTTCAAAAGAAACTGATGGTGATGAGCCAGACGAGCCAAGCAC
GGCAAGCGCAACGGGCGGCGCAGGGGATGTCGTAGATGGCTTCAGTGGTG
GGTGAACGAGAAATCGACTTGAGCAAACTATCAATAGAGCAGCTGAACCA
GCTGAAAACGCAACTGGGAGAGGAGCTGGAGACCATTACGCGGCACTACG
CCTCACTGCGCGAAGCCCAATCCCGGCTGAACGGCTGCCGGACCTCTGTC
AACGAACTAGCACCTACAAAGAACGGTGACGAGATTCTTGTTCCCTTAAC
TCAATCTCTGTACGTCCCTGGCACTATAAGCGACGCGGACAAGGTCCTTG
TGGACGTGGGCACCGGCTACTACATCGAAAAGACACTACCTAAGGCGAAA
GAATACCTGGAGAAAAAGATTGCCGTCATCAACACAAATGCGGAGTCCGT
CGCACAGgtcCTGACGCAGAAGGAGAAGTCTCTGCGCATGGTGTCCGGGT
ACTTTCAAAAGAAACTGATGGTGATGAGCCAGACGAGCCAAGCACGGCAA
GCGCAACGGGCGGCGCAGGGGATGTCGTAGATGGCTTCAGTGGTGGGTGA
ACGAGAAATCGACTTGAGCAAACTATCAATAGAGCAGCTGAACCAGCTGA
AAACGCAACTGGGAGAGGAGCTGGAGACCATTACGCGGCACTACGCCTCA
CTGCGCGAAGCCCAATCCCGGCTGAACGGCTGCCGGACCTCTGTCAACGA
ACTAGCACCTACAAAGAACGGTGACGAGATTCTTGTTCCCTTAACTCAAT
CTCTGTACGTCCCTGGCACTATAAGCGACGCGGACAAGGTCCTTGTGGAC
GTGGGCACCGGCTACTACATCGAAAAGACACTACCTAAGGCGAAAGAATA
CCTGGAGAAAAAGATTGCCGTCATCAACACAAATGCGGAGTCCGTCGCAC
AGgtcCTGACGCAGAAGGAGAAGTCTCTGCGCATGGTGTCCGGGTACTTT
CAAAAGAAACTGATGGTGATGAGCCAGACGAGCCAAGCACGGCAAGCGCA
ACGGGCGGCGCAGGGGATGTCGTAG
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Synonyms
Publications