rna9900, rna9900 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9900
Unique Name	rna9900
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1783
Alignment location	KK037257.1:83523..84152 -

Link to JBrowse

Properties


Property Name	Value
Product	pyruvate carboxylase subunit b
Orig transcript id	gnl\|cribi\|Naga_101620g1.4688.mrna
Orig protein id	gnl\|cribi\|Naga_101620g1.4688
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037257.1	supercontig	KK037257.1:83523..84152 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101620g1	gene9607	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9900	rna9900-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20804.1	cds9869	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037257.1:83523..84152-
coding sequence from alignment at KK037257.1:83523..84152-

mRNA sequence

>rna9900 ID=rna9900|Name=rna9900|organism=Nannochloropsis gaditana|type=mRNA|length=1783bp
GAAAGGGGTAATCAACGGCGTTCAGTGCCATTCCAGGCGTGTATCTTTCC
CGCGATCTTTCCGTTCCCTCTTTAGTCGTACTTCCGCTAGCACTGGGGGA
AGCTTTTTATGCATGGAGGAGGGAAATGAATGCAAAAGAGTGCAAAGTAG
ACGTCATAGAGCCGGATAGGGGAGTGTTTTCACCCTTTCTGGGTCCCGTT
ACCTCGCCCTTCCCCCCTCCCTCCCTCCTTCCCTCCCTCCCTGCCTACCT
GCTTCTTCCTTAGACTCAGGAAGACAGTCCGTTGCGGCGCTTCTACCCCC
CTGATTTTGAAACGGACCAGAACGGGAAGCAAAACGCATGGGAGAGTGTG
GTTTTAATCCCCTTTATCGACGAAGACTTGATGGTCTCGGCGTTGGCGCA
GGTCGACCATCGGACCGCACTCTCGGAGGAAGAGCGTGCGCGGAACGTGC
TAGGGAAAGAGCACACGTTCTGGCCGGCAAAAGGGCATGGTCCCCCGGTA
GGTCGACAGCTCTCAGGCCTGGTGGATGGGCGGAAGAAAGGGAAGAGCCG
TGCCAGCCACCATGGGGTTCCCAGACAAATGCCACAGCCCGAAGAATTTG
ACGATTGAGGGGAAAGCAGGGCCAGGAGGAGAGGAGGAAGGAGGGAGGGA
GGGAGGGAAAGGGGCAAAAAAGACACGAAGGAAAGGAGGACAAGCCCGGG
GGAGTCGACGGCTGGGACCGGCGCGGAGGAGAGGGAGGGTGGTCAAGTCA
CCAGGGGTTGGGGGAGGGGGGCGAGCGCAGAGAGGAAGGGGAACGGGCTA
TGTTGCAAAGGAAGGGTAGAGGGCAAGCGGTCATTATGGAACTAGAGTAC
GCGGTTACTGCATCCTTCGCAACCCCTAGAAAGTAAACAATGGGACGCTA
TCCTCGGATTCCGTGCAGCAACGTGCTTGACGTGGAGCATTTCCACAGAG
GACGCCGACCCAGACGCGAGGGTACAAACACAGGAAGCCTGTGCGTTTTT
TGCACCAGGTGCTTCGCAGTAATTCTTTTGGGAAACCACAGGACTCCATC
GCCAGGACGTTTTTCCCCTCCCTCATCCTCCTCCGTAGTTTCCCGTGTCC
TGCGGGACGGTCGGCAGGACGACAGCATCTCCCATCGCCTCCAGGACAAA
GAGGACCAACCCCATCATCGGATCCTGCCTTCTCCTTTCCTCCTTAGGCG
TCTCTGCATCGATCCCTTCGACTCCGTCTCCCGATTGATTTTGTCCTCAT
TCCCAGTGGTTGGGCACCTCGCTACCCTCTCAGTGACTAGGACCTCTGAC
CCCATGCCCTCGATTATTTCTGCTACCATTTTAGTTTCAACACGTGCGAA
TAAGAGTTAATAAAAAGTTAAAGCCTTGCCATCTCAGCCTATAATGCTGA
CGCGAAAATAACAAGAAATGCGCCATTCCCCCCCTCAACAAAAGATTTAT
CAACCTCCTCCTCTCTCAACCGCGAGCAGCGGTCATGGACTGCGGAACAT
GTGGCGCAAACAGTTTTCTTGAGCTTGGCCTTGCCGTCCGTAGGGAAAGC
CTGGAGGGAAAGCTCGCCGATATTTTCTCCAAGGGAAAACACTTTCACCA
CCTTGAAGGCTCCTTAACTCCGACCTCGCTGTAAGGCTGGTCCTCGAGGT
CCTAGTTCTTTTTCCTCCTCCCGTCCGACCTCCTTCCCTTTTTTCTCCCC
TCCGTCAATGTCACCTGTCTTTTCCCCTCCCTTCGCTGCTTCTTCCGCGT
CGGACACTGGAACTGGTTTCTTCCTCCCTCCCT

protein sequence of rna9900

>rna9900-protein ID=rna9900-protein|Name=rna9900|organism=Nannochloropsis gaditana|type=polypeptide|length=76bp
MVKEGLPLFTEVCSTDVLGFSFGGRGYKEQLEDAIAKTKEFCAVDVSLRT
LKHKDSTISVVWVTHNFAFLERERER

mRNA from alignment at KK037257.1:83523..84152-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9900 ID=rna9900|Name=rna9900|organism=Nannochloropsis gaditana|type=mRNA|length=630bp|location=Sequence derived from alignment at KK037257.1:83523..84152- (Nannochloropsis gaditana)
CCCACAACAGTTGAACCGACGTGCTCTCGGTGTACCCGCAACATTTTGGC
GGATTCCATTGTTCAGATGGTCAAAGAGGGTCTTCCGCTTTTTACCGAGG
TGTGCTCGACGGACGTGCTGGGCTTCTCCTTCGGCGGCCGCGGGTACAAG
GAGCAGCTCGAGGACGCGATTGCCAAGACGAAAGTAAGGGGGCCGTGGTT
TATATGATCGGGCGGACGATGGAAGCCTCCCCGCTTGCCTTTGTACGTCC
TCATCGTGCTGCCATCTGTCGCTTTACACAGGAGTTCTGCGCCGTCGACG
TCTCTCTCCGCACCCTCAAACACAAGGACTCCACCATCTCAGTCGTGTGG
GTCACGCATAATTTTGCCTTCCTCGGTATGTCTTTCCCCTTCTCCCACAT
GTCTATATATAGAGCTCTTGCTTCCCTCTCCATCCTAAGGAGGAGCCCCG
ATGTCAGGTTCAGTCCGTAGACTATGTATAGTATAAAGATAGTATATATA
TATAATAATAATATATGCATAGGAGGCGATCAAGAGGCCAGACATGTTGA
GTCCGGAGACTATATGTGGTGGATATATATATATATACACATACATACAT
ACATATACAGAGAGAGAGAGAGAGAGATAG

Coding sequence (CDS) from alignment at KK037257.1:83523..84152-

>rna9900 ID=rna9900|Name=rna9900|organism=Nannochloropsis gaditana|type=CDS|length=693bp|location=Sequence derived from alignment at KK037257.1:83523..84152- (Nannochloropsis gaditana)
AGAGAGAGAGAGAGAGATAGGAGTTCTGCGCCGTCGACGTCTCTCTCCGC
ACCCTCAAACACAAGGACTCCACCATCTCAGTCGTGTGGGTCACGCATAA
TTTTGCCTTCCTCGATGGTCAAAGAGGGTCTTCCGCTTTTTACCGAGGTG
TGCTCGACGGACGTGCTGGGCTTCTCCTTCGGCGGCCGCGGGTACAAGGA
GCAGCTCGAGGACGCGATTGCCAAGACGAAAAGAGAGAGAGAGAGAGATA
GGAGTTCTGCGCCGTCGACGTCTCTCTCCGCACCCTCAAACACAAGGACT
CCACCATCTCAGTCGTGTGGGTCACGCATAATTTTGCCTTCCTCGATGGT
CAAAGAGGGTCTTCCGCTTTTTACCGAGGTGTGCTCGACGGACGTGCTGG
GCTTCTCCTTCGGCGGCCGCGGGTACAAGGAGCAGCTCGAGGACGCGATT
GCCAAGACGAAAAGAGAGAGAGAGAGAGATAGGAGTTCTGCGCCGTCGAC
GTCTCTCTCCGCACCCTCAAACACAAGGACTCCACCATCTCAGTCGTGTG
GGTCACGCATAATTTTGCCTTCCTCGATGGTCAAAGAGGGTCTTCCGCTT
TTTACCGAGGTGTGCTCGACGGACGTGCTGGGCTTCTCCTTCGGCGGCCG
CGGGTACAAGGAGCAGCTCGAGGACGCGATTGCCAAGACGAAA

Synonyms

Publications