EWM20807.1, cds9866 (CDS) Nannochloropsis gaditana

Overview
NameEWM20807.1
Unique Namecds9866
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037257.1:78335..78497 +
Alignment locationKK037257.1:78675..78754 +
Alignment locationKK037257.1:78945..79046 +
Alignment locationKK037257.1:79299..79451 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20807.1
Productdhm exonuclease
Orig transcript idgnl|cribi|Naga_101973g1.7804.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:78335..78497 +
KK037257.1supercontigKK037257.1:78675..78754 +
KK037257.1supercontigKK037257.1:78945..79046 +
KK037257.1supercontigKK037257.1:79299..79451 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
Vocabulary: INTERPRO
TermDefinition
IPR0270735_3_exoribonuclease
Homology
BLAST of EWM20807.1 vs. NCBI_GenBank
Match: gi|585100715|gb|EWM20807.1| (dhm exonuclease [Nannochloropsis gaditana])

HSP 1 Score: 342.428 bits (877), Expect = 2.489e-119
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0
Query:    1 MLREMLRLQFKPLKFHPTFGPRFDLERIIDDYVLMCMFVGNDFIPHLPHMDIADGALNMMMAVYREAVPSLLGGYITDKAKVHQGRLELFLREIARREPLYFQYRAKEDKDPQWQGDGYKDHYYQSKLGIPPGESEASQQARRDVARSYLEGLYWVLTYYHEGVR 165
            MLREMLRLQFKPLKFHPTFGPRFDLERIIDDYVLMCMFVGNDFIPHLPHMDIADGALNMMMAVYREAVPSLLGGYITDKAKVHQGRLELFLREIARREPLYFQYRAKEDKDPQWQGDGYKDHYYQSKLGIPPGESEASQQARRDVARSYLEGLYWVLTYYHEGVR
Sbjct:    1 MLREMLRLQFKPLKFHPTFGPRFDLERIIDDYVLMCMFVGNDFIPHLPHMDIADGALNMMMAVYREAVPSLLGGYITDKAKVHQGRLELFLREIARREPLYFQYRAKEDKDPQWQGDGYKDHYYQSKLGIPPGESEASQQARRDVARSYLEGLYWVLTYYHEGVR 165          
BLAST of EWM20807.1 vs. NCBI_GenBank
Match: gi|298713577|emb|CBJ27105.1| (dhm exonuclease [Ectocarpus siliculosus])

HSP 1 Score: 174.096 bits (440), Expect = 8.384e-48
Identity = 85/165 (51.52%), Postives = 117/165 (70.91%), Query Frame = 0
Query:    1 MLREMLRLQFKPLKFHPTFGPRFDLERIIDDYVLMCMFVGNDFIPHLPHMDIADGALNMMMAVYREAVPSLLGGYITDKAKVHQGRLELFLREIARREPLYFQYRAKEDKDPQWQGDG-YKDHYYQSKLGIPPGESEASQQARRDVARSYLEGLYWVLTYYHEGV 164
            +LREMLRLQF+     P    +F+LER+IDD+V MC+ VGNDF+P++PH+DI+DGALN MM +Y+  +P  +GGY+T K ++H GRLE+F+ E++RRE +YF+ R  E+ D   Q  G Y D YY++KL + P + E     +R V + YLEGLYWVL YYH GV
Sbjct:  390 LLREMLRLQFQSQANDPKLPFKFELERVIDDFVFMCILVGNDFLPNVPHLDISDGALNHMMNMYKLLLPK-MGGYLTKKDQIHHGRLEMFMHEVSRREAMYFRRRGVEESDLVLQDPGKYTDRYYKTKLDLDPEQEE----EKRAVVKHYLEGLYWVLKYYHVGV 549          
BLAST of EWM20807.1 vs. NCBI_GenBank
Match: gi|873239646|emb|CEL94169.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 168.318 bits (425), Expect = 1.461e-45
Identity = 82/165 (49.70%), Postives = 118/165 (71.52%), Query Frame = 0
Query:    1 MLREMLRLQFKPLKFHPTFGPRFDLERIIDDYVLMCMFVGNDFIPHLPHMDIADGALNMMMAVYREAVPSLLGGYITDKAKVHQGRLELFLREIARREPLYFQYRAKEDKDPQW-QGDGYKDHYYQSKLGIPPGESEASQQARRDVARSYLEGLYWVLTYYHEGV 164
            +LRE+L +QF+ +  HP     +DLER+IDD++ +C  +GNDF+PH+PH+DIA+G++N ++A+Y + +P  LGGY+TDKAK+H  RLE+FLR I+  E LYF+ RAK D +P +   + YKDHYY  KLG+ P + E     +R + + YLEGL+WVL YYH G 
Sbjct:  280 ILREVLYMQFRGIAKHPDLTFEWDLERLIDDFIFLCFLIGNDFLPHIPHLDIAEGSINDILALYIKLLPK-LGGYLTDKAKLHPQRLEVFLRAISHSEALYFRRRAKLDDEPAFADAEKYKDHYYWMKLGLQPHDVE----DKRRLNQCYLEGLHWVLHYYHHGC 439          
BLAST of EWM20807.1 vs. NCBI_GenBank
Match: gi|545706830|ref|XP_005705731.1| (5'-3' exoribonuclease [Galdieria sulphuraria] >gi|452822189|gb|EME29211.1| 5'-3' exoribonuclease [Galdieria sulphuraria])

HSP 1 Score: 163.696 bits (413), Expect = 1.298e-44
Identity = 79/164 (48.17%), Postives = 115/164 (70.12%), Query Frame = 0
Query:    1 MLREMLRLQFKPLKFHPTFGPRFDLERIIDDYVLMCMFVGNDFIPHLPHMDIADGALNMMMAVYREAVPSLLGGYITDKAKVHQGRLELFLREIARREPLYFQYRAKEDKDPQWQGDGYKDHYYQSKLGIPPGESEASQQARRDVARSYLEGLYWVLTYYHEGV 164
            +LR+ML L+FKP          +DLER++DD+V MC+FVGNDF+P+LPH+DI  GALN+M AVY+  +P  +GGY+T++ ++H  R E FL+++A+ E  YFQYRA E+ +P + GD YK +YYQSKLGI     E      R++ + Y EGL+++L YY++G 
Sbjct:  252 LLRDMLYLEFKPFG-DTELSFAYDLERVVDDFVFMCIFVGNDFLPNLPHLDINTGALNVMFAVYKSLLPQ-MGGYLTERHRIHPKRTEWFLQQVAKAERAYFQYRAVEENEPGFLGDEYKSYYYQSKLGI---RMEEEPHKVRELCQKYYEGLHFILQYYYQGC 410          
BLAST of EWM20807.1 vs. NCBI_GenBank
Match: gi|546319947|ref|XP_005717159.1| (unnamed protein product [Chondrus crispus] >gi|507113730|emb|CDF37340.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 134.035 bits (336), Expect = 2.035e-33
Identity = 65/143 (45.45%), Postives = 92/143 (64.34%), Query Frame = 0
Query:   22 RFDLERIIDDYVLMCMFVGNDFIPHLPHMDIADGALNMMMAVYREAVPSLLGGYITDKAKVHQGRLELFLREIARREPLYFQYRAKEDKDPQWQGDGYKDHYYQSKLGIPPGESEASQQARRDVARSYLEGLYWVLTYYHEGV 164
            + +  R++DD+V MCM VGNDFIP+LPH+DIA+GA+N+M  VY+E +P+  GGYIT   K+H  RLE FL ++++ E  YF+ RA  D    ++   Y+  YY+ K          SQ   R + R ++EGL+WVL YYH GV
Sbjct:  317 KLEARRVVDDFVFMCMLVGNDFIPNLPHLDIAEGAINIMFRVYKELLPT-WGGYITLGHKLHHDRLESFLTKLSQSESDYFENRAFSDNMAAYRTPAYRREYYKQKFNFDVDGEGGSQNVER-LKRIHMEGLHWVLQYYHNGV 457          
BLAST of EWM20807.1 vs. NCBI_GenBank
Match: gi|162606084|ref|XP_001713557.1| (very similar to mouse Dhm1 and Dhm2 [Guillardia theta] >gi|13794477|gb|AAK39852.1|AF165818_60 very similar to mouse Dhm1 and Dhm2 (nucleomorph) [Guillardia theta])

HSP 1 Score: 129.028 bits (323), Expect = 6.790e-32
Identity = 67/165 (40.61%), Postives = 106/165 (64.24%), Query Frame = 0
Query:    1 MLREMLRLQFKPLKFHPTFGPRFDLERIIDDYVLMCMFVGNDFIPHLPHMDIADGALNMMMAVYREAVPSLLGGYITDKAKVHQGRLELFLREIA-RREPLYFQYRAKEDKDPQWQGDGYKDHYYQSKLGIPPGESEASQQAR-RDVARSYLEGLYWVLTYYHEG 163
            +LREML L+F+P +F       +++ERI+DD+V MCM +GNDF+P +PH+DI  G LN+++  Y+E +   + GY+T+K+K+H GR ELF  +++   E LYF  +  + ++     D YK  YY  KL      S ++ + R  D+ ++Y+EGL+W L YYH+G
Sbjct:  253 LLREMLYLEFRPREF---LDQDYNMERIVDDFVFMCMLIGNDFLPGIPHLDIGYGGLNLLVRSYKE-IQKHIHGYLTNKSKIHVGRAELFFEKLSVESEELYFLNKGNDIENNLCSND-YKMEYYVKKLNC----SVSNNKERINDLIQTYIEGLHWCLYYYHKG 408          
BLAST of EWM20807.1 vs. NCBI_GenBank
Match: gi|544216146|ref|XP_005538218.1| (exonuclease [Cyanidioschyzon merolae strain 10D] >gi|449018780|dbj|BAM82182.1| exonuclease [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 128.642 bits (322), Expect = 2.178e-31
Identity = 62/142 (43.66%), Postives = 93/142 (65.49%), Query Frame = 0
Query:   24 DLERIIDDYVLMCMFVGNDFIPHLPHMDIADGALNMMMAVYREAVPSLLGGYITDKAKVHQGRLELFLREIARREPLYFQYRAKEDKDPQW-QGDGYKDHYYQSKLGIPPGESEASQQARRDVARSYLEGLYWVLTYYHEGV 164
            DLERI+DD++ M + VGNDF+PHLPH+DI+DGAL ++   Y+E +P ++GGY+TDK ++H  RLE F   +A  E  YF  R  ++   ++   + Y+  YY+ K  +     + +++ R  V +SYLEGL+WVL YYH G 
Sbjct:  324 DLERIVDDFMFMGVLVGNDFLPHLPHLDISDGALELLFGAYKELLP-IMGGYLTDKHRIHPDRLEAFAARLAEEERAYFNRRGVDENIQEYCDPERYRVAYYRDKFRLNLDAPDGNERLRGQVIQSYLEGLHWVLQYYHHGC 464          
BLAST of EWM20807.1 vs. NCBI_GenBank
Match: gi|1189384881|gb|OSX72085.1| (hypothetical protein BU14_0470s0014 [Porphyra umbilicalis])

HSP 1 Score: 126.716 bits (317), Expect = 8.872e-31
Identity = 70/175 (40.00%), Postives = 105/175 (60.00%), Query Frame = 0
Query:    1 MLREMLRLQFK----------PLKFHPTFGPRFDLERIIDDYVLMCMFVGNDFIPHLPHMDIADGALNMMMAVYREAVPSLLGGYITDKAKVHQGRLELFLREIARREPLYFQYRAKEDKDPQWQGDG-YKDHYYQSKLGIPPGESEASQQARRDVARSYLEGLYWVLTYYHEGV 164
            +LR+ML L+FK          P         ++ + R++DD+V MCM VGNDF+P+LPH+DIA+GAL++M   Y+  +P    GY+T+  ++H GRLE FL  +++ E  YF+ R  E+  P +  +  Y+ HYY+ KL + P   E   +A   +   YLEGL+WVL YYH+G 
Sbjct:  255 LLRDMLYLEFKGCVEEVRRTAPDGSAGDGAFQYQVRRVVDDFVFMCMLVGNDFVPNLPHLDIAEGALSVMFRSYKALLPRWR-GYLTESHRLHPGRLEQFLSFVSQSESQYFRARGLEEGVPAYVEEATYRSHYYREKLDMDP---EVDIEALTALKTHYLEGLHWVLQYYHQGC 425          
BLAST of EWM20807.1 vs. NCBI_GenBank
Match: gi|160331478|ref|XP_001712446.1| (dhm [Hemiselmis andersenii] >gi|159765894|gb|ABW98121.1| dhm [Hemiselmis andersenii])

HSP 1 Score: 125.946 bits (315), Expect = 9.200e-31
Identity = 64/167 (38.32%), Postives = 105/167 (62.87%), Query Frame = 0
Query:    1 MLREMLRLQFKPLKFHPTFGPRFDLERIIDDYVLMCMFVGNDFIPHLPHMDIADGALNMMMAVYREAVPSLLGGYITDKAKVHQGRLELFLREIARREPLYFQYRAKEDKDPQWQGDG----YKDHYYQSKLGIPPGESEASQQARRDVARSYLEGLYWVLTYYHEG 163
            +LR+ML L+FKP +   ++   F++ERI+DD++ MCM +GNDF+P LPH+ IA G LN+++  Y+E +     GY+T K ++H GR+ELFL +I+     +F  + +++    W G+G    YK+ YY SKL +     +  ++  + +   Y++GL W L YYH+G
Sbjct:  260 LLRDMLYLEFKPKE---SWRFTFNIERIVDDFIFMCMLIGNDFLPSLPHLSIASGGLNLLVRSYKE-IQKDSKGYLTKKYQMHMGRVELFLEKISNEAEEFFFCQNEKN----WGGNGSTLDYKESYYSSKLNLDYSSGKDKKRLEK-LKSDYIQGLNWCLYYYHKG 417          
BLAST of EWM20807.1 vs. NCBI_GenBank
Match: gi|330040606|ref|XP_003239969.1| (dhm exonuclease [Cryptomonas paramecium] >gi|327206895|gb|AEA39071.1| dhm exonuclease [Cryptomonas paramecium])

HSP 1 Score: 125.176 bits (313), Expect = 1.781e-30
Identity = 65/162 (40.12%), Postives = 99/162 (61.11%), Query Frame = 0
Query:    1 MLREMLRLQFKPLKFHPTFGPRFDLERIIDDYVLMCMFVGNDFIPHLPHMDIADGALNMMMAVYREAVPSLLGGYITDKAKVHQGRLELFLREIARREPLYFQYRAKEDKDPQWQGDGYKDHYYQSKLGIPPGESEASQQARRDVARSYLEGLYWVLTYYHE 162
            +LR+M+ L+FKP K   T   ++D+ERIIDD++ MCM +GNDFIP LPH++I  G LN+++  Y+E +   L GY+T K ++H GR ELF R+I+      F +R K++K      + YK  YY SK        +       ++ ++Y+ GL+W L YYH+
Sbjct:  253 LLRDMIFLEFKPKK---TILFKYDVERIIDDFIFMCMLLGNDFIPGLPHLNITQGGLNLLVRSYKE-IQQKLDGYLTKKHQIHFGRAELFFRKISSEAESLFFFRRKQEKTGN---ETYKSSYYLSKFKF---TYQIEHGFLSNLIKNYIHGLHWCLFYYHK 404          
The following BLAST results are available for this feature:
BLAST of EWM20807.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100715|gb|EWM20807.1|2.489e-119100.00dhm exonuclease [Nannochloropsis gaditana][more]
gi|298713577|emb|CBJ27105.1|8.384e-4851.52dhm exonuclease [Ectocarpus siliculosus][more]
gi|873239646|emb|CEL94169.1|1.461e-4549.70unnamed protein product [Vitrella brassicaformis C... [more]
gi|545706830|ref|XP_005705731.1|1.298e-4448.175'-3' exoribonuclease [Galdieria sulphuraria] >gi|... [more]
gi|546319947|ref|XP_005717159.1|2.035e-3345.45unnamed protein product [Chondrus crispus] >gi|507... [more]
gi|162606084|ref|XP_001713557.1|6.790e-3240.61very similar to mouse Dhm1 and Dhm2 [Guillardia th... [more]
gi|544216146|ref|XP_005538218.1|2.178e-3143.66exonuclease [Cyanidioschyzon merolae strain 10D] >... [more]
gi|1189384881|gb|OSX72085.1|8.872e-3140.00hypothetical protein BU14_0470s0014 [Porphyra umbi... [more]
gi|160331478|ref|XP_001712446.1|9.200e-3138.32dhm [Hemiselmis andersenii] >gi|159765894|gb|ABW98... [more]
gi|330040606|ref|XP_003239969.1|1.781e-3040.12dhm exonuclease [Cryptomonas paramecium] >gi|32720... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9897rna9897Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications