EWM20807.1, cds9866 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20807.1 vs. NCBI_GenBank
Match: gi|585100715|gb|EWM20807.1| (dhm exonuclease [Nannochloropsis gaditana]) HSP 1 Score: 342.428 bits (877), Expect = 2.489e-119 Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0 Query: 1 MLREMLRLQFKPLKFHPTFGPRFDLERIIDDYVLMCMFVGNDFIPHLPHMDIADGALNMMMAVYREAVPSLLGGYITDKAKVHQGRLELFLREIARREPLYFQYRAKEDKDPQWQGDGYKDHYYQSKLGIPPGESEASQQARRDVARSYLEGLYWVLTYYHEGVR 165 MLREMLRLQFKPLKFHPTFGPRFDLERIIDDYVLMCMFVGNDFIPHLPHMDIADGALNMMMAVYREAVPSLLGGYITDKAKVHQGRLELFLREIARREPLYFQYRAKEDKDPQWQGDGYKDHYYQSKLGIPPGESEASQQARRDVARSYLEGLYWVLTYYHEGVR Sbjct: 1 MLREMLRLQFKPLKFHPTFGPRFDLERIIDDYVLMCMFVGNDFIPHLPHMDIADGALNMMMAVYREAVPSLLGGYITDKAKVHQGRLELFLREIARREPLYFQYRAKEDKDPQWQGDGYKDHYYQSKLGIPPGESEASQQARRDVARSYLEGLYWVLTYYHEGVR 165
BLAST of EWM20807.1 vs. NCBI_GenBank
Match: gi|298713577|emb|CBJ27105.1| (dhm exonuclease [Ectocarpus siliculosus]) HSP 1 Score: 174.096 bits (440), Expect = 8.384e-48 Identity = 85/165 (51.52%), Postives = 117/165 (70.91%), Query Frame = 0 Query: 1 MLREMLRLQFKPLKFHPTFGPRFDLERIIDDYVLMCMFVGNDFIPHLPHMDIADGALNMMMAVYREAVPSLLGGYITDKAKVHQGRLELFLREIARREPLYFQYRAKEDKDPQWQGDG-YKDHYYQSKLGIPPGESEASQQARRDVARSYLEGLYWVLTYYHEGV 164 +LREMLRLQF+ P +F+LER+IDD+V MC+ VGNDF+P++PH+DI+DGALN MM +Y+ +P +GGY+T K ++H GRLE+F+ E++RRE +YF+ R E+ D Q G Y D YY++KL + P + E +R V + YLEGLYWVL YYH GV Sbjct: 390 LLREMLRLQFQSQANDPKLPFKFELERVIDDFVFMCILVGNDFLPNVPHLDISDGALNHMMNMYKLLLPK-MGGYLTKKDQIHHGRLEMFMHEVSRREAMYFRRRGVEESDLVLQDPGKYTDRYYKTKLDLDPEQEE----EKRAVVKHYLEGLYWVLKYYHVGV 549
BLAST of EWM20807.1 vs. NCBI_GenBank
Match: gi|873239646|emb|CEL94169.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 168.318 bits (425), Expect = 1.461e-45 Identity = 82/165 (49.70%), Postives = 118/165 (71.52%), Query Frame = 0 Query: 1 MLREMLRLQFKPLKFHPTFGPRFDLERIIDDYVLMCMFVGNDFIPHLPHMDIADGALNMMMAVYREAVPSLLGGYITDKAKVHQGRLELFLREIARREPLYFQYRAKEDKDPQW-QGDGYKDHYYQSKLGIPPGESEASQQARRDVARSYLEGLYWVLTYYHEGV 164 +LRE+L +QF+ + HP +DLER+IDD++ +C +GNDF+PH+PH+DIA+G++N ++A+Y + +P LGGY+TDKAK+H RLE+FLR I+ E LYF+ RAK D +P + + YKDHYY KLG+ P + E +R + + YLEGL+WVL YYH G Sbjct: 280 ILREVLYMQFRGIAKHPDLTFEWDLERLIDDFIFLCFLIGNDFLPHIPHLDIAEGSINDILALYIKLLPK-LGGYLTDKAKLHPQRLEVFLRAISHSEALYFRRRAKLDDEPAFADAEKYKDHYYWMKLGLQPHDVE----DKRRLNQCYLEGLHWVLHYYHHGC 439
BLAST of EWM20807.1 vs. NCBI_GenBank
Match: gi|545706830|ref|XP_005705731.1| (5'-3' exoribonuclease [Galdieria sulphuraria] >gi|452822189|gb|EME29211.1| 5'-3' exoribonuclease [Galdieria sulphuraria]) HSP 1 Score: 163.696 bits (413), Expect = 1.298e-44 Identity = 79/164 (48.17%), Postives = 115/164 (70.12%), Query Frame = 0 Query: 1 MLREMLRLQFKPLKFHPTFGPRFDLERIIDDYVLMCMFVGNDFIPHLPHMDIADGALNMMMAVYREAVPSLLGGYITDKAKVHQGRLELFLREIARREPLYFQYRAKEDKDPQWQGDGYKDHYYQSKLGIPPGESEASQQARRDVARSYLEGLYWVLTYYHEGV 164 +LR+ML L+FKP +DLER++DD+V MC+FVGNDF+P+LPH+DI GALN+M AVY+ +P +GGY+T++ ++H R E FL+++A+ E YFQYRA E+ +P + GD YK +YYQSKLGI E R++ + Y EGL+++L YY++G Sbjct: 252 LLRDMLYLEFKPFG-DTELSFAYDLERVVDDFVFMCIFVGNDFLPNLPHLDINTGALNVMFAVYKSLLPQ-MGGYLTERHRIHPKRTEWFLQQVAKAERAYFQYRAVEENEPGFLGDEYKSYYYQSKLGI---RMEEEPHKVRELCQKYYEGLHFILQYYYQGC 410
BLAST of EWM20807.1 vs. NCBI_GenBank
Match: gi|546319947|ref|XP_005717159.1| (unnamed protein product [Chondrus crispus] >gi|507113730|emb|CDF37340.1| unnamed protein product [Chondrus crispus]) HSP 1 Score: 134.035 bits (336), Expect = 2.035e-33 Identity = 65/143 (45.45%), Postives = 92/143 (64.34%), Query Frame = 0 Query: 22 RFDLERIIDDYVLMCMFVGNDFIPHLPHMDIADGALNMMMAVYREAVPSLLGGYITDKAKVHQGRLELFLREIARREPLYFQYRAKEDKDPQWQGDGYKDHYYQSKLGIPPGESEASQQARRDVARSYLEGLYWVLTYYHEGV 164 + + R++DD+V MCM VGNDFIP+LPH+DIA+GA+N+M VY+E +P+ GGYIT K+H RLE FL ++++ E YF+ RA D ++ Y+ YY+ K SQ R + R ++EGL+WVL YYH GV Sbjct: 317 KLEARRVVDDFVFMCMLVGNDFIPNLPHLDIAEGAINIMFRVYKELLPT-WGGYITLGHKLHHDRLESFLTKLSQSESDYFENRAFSDNMAAYRTPAYRREYYKQKFNFDVDGEGGSQNVER-LKRIHMEGLHWVLQYYHNGV 457
BLAST of EWM20807.1 vs. NCBI_GenBank
Match: gi|162606084|ref|XP_001713557.1| (very similar to mouse Dhm1 and Dhm2 [Guillardia theta] >gi|13794477|gb|AAK39852.1|AF165818_60 very similar to mouse Dhm1 and Dhm2 (nucleomorph) [Guillardia theta]) HSP 1 Score: 129.028 bits (323), Expect = 6.790e-32 Identity = 67/165 (40.61%), Postives = 106/165 (64.24%), Query Frame = 0 Query: 1 MLREMLRLQFKPLKFHPTFGPRFDLERIIDDYVLMCMFVGNDFIPHLPHMDIADGALNMMMAVYREAVPSLLGGYITDKAKVHQGRLELFLREIA-RREPLYFQYRAKEDKDPQWQGDGYKDHYYQSKLGIPPGESEASQQAR-RDVARSYLEGLYWVLTYYHEG 163 +LREML L+F+P +F +++ERI+DD+V MCM +GNDF+P +PH+DI G LN+++ Y+E + + GY+T+K+K+H GR ELF +++ E LYF + + ++ D YK YY KL S ++ + R D+ ++Y+EGL+W L YYH+G Sbjct: 253 LLREMLYLEFRPREF---LDQDYNMERIVDDFVFMCMLIGNDFLPGIPHLDIGYGGLNLLVRSYKE-IQKHIHGYLTNKSKIHVGRAELFFEKLSVESEELYFLNKGNDIENNLCSND-YKMEYYVKKLNC----SVSNNKERINDLIQTYIEGLHWCLYYYHKG 408
BLAST of EWM20807.1 vs. NCBI_GenBank
Match: gi|544216146|ref|XP_005538218.1| (exonuclease [Cyanidioschyzon merolae strain 10D] >gi|449018780|dbj|BAM82182.1| exonuclease [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 128.642 bits (322), Expect = 2.178e-31 Identity = 62/142 (43.66%), Postives = 93/142 (65.49%), Query Frame = 0 Query: 24 DLERIIDDYVLMCMFVGNDFIPHLPHMDIADGALNMMMAVYREAVPSLLGGYITDKAKVHQGRLELFLREIARREPLYFQYRAKEDKDPQW-QGDGYKDHYYQSKLGIPPGESEASQQARRDVARSYLEGLYWVLTYYHEGV 164 DLERI+DD++ M + VGNDF+PHLPH+DI+DGAL ++ Y+E +P ++GGY+TDK ++H RLE F +A E YF R ++ ++ + Y+ YY+ K + + +++ R V +SYLEGL+WVL YYH G Sbjct: 324 DLERIVDDFMFMGVLVGNDFLPHLPHLDISDGALELLFGAYKELLP-IMGGYLTDKHRIHPDRLEAFAARLAEEERAYFNRRGVDENIQEYCDPERYRVAYYRDKFRLNLDAPDGNERLRGQVIQSYLEGLHWVLQYYHHGC 464
BLAST of EWM20807.1 vs. NCBI_GenBank
Match: gi|1189384881|gb|OSX72085.1| (hypothetical protein BU14_0470s0014 [Porphyra umbilicalis]) HSP 1 Score: 126.716 bits (317), Expect = 8.872e-31 Identity = 70/175 (40.00%), Postives = 105/175 (60.00%), Query Frame = 0 Query: 1 MLREMLRLQFK----------PLKFHPTFGPRFDLERIIDDYVLMCMFVGNDFIPHLPHMDIADGALNMMMAVYREAVPSLLGGYITDKAKVHQGRLELFLREIARREPLYFQYRAKEDKDPQWQGDG-YKDHYYQSKLGIPPGESEASQQARRDVARSYLEGLYWVLTYYHEGV 164 +LR+ML L+FK P ++ + R++DD+V MCM VGNDF+P+LPH+DIA+GAL++M Y+ +P GY+T+ ++H GRLE FL +++ E YF+ R E+ P + + Y+ HYY+ KL + P E +A + YLEGL+WVL YYH+G Sbjct: 255 LLRDMLYLEFKGCVEEVRRTAPDGSAGDGAFQYQVRRVVDDFVFMCMLVGNDFVPNLPHLDIAEGALSVMFRSYKALLPRWR-GYLTESHRLHPGRLEQFLSFVSQSESQYFRARGLEEGVPAYVEEATYRSHYYREKLDMDP---EVDIEALTALKTHYLEGLHWVLQYYHQGC 425
BLAST of EWM20807.1 vs. NCBI_GenBank
Match: gi|160331478|ref|XP_001712446.1| (dhm [Hemiselmis andersenii] >gi|159765894|gb|ABW98121.1| dhm [Hemiselmis andersenii]) HSP 1 Score: 125.946 bits (315), Expect = 9.200e-31 Identity = 64/167 (38.32%), Postives = 105/167 (62.87%), Query Frame = 0 Query: 1 MLREMLRLQFKPLKFHPTFGPRFDLERIIDDYVLMCMFVGNDFIPHLPHMDIADGALNMMMAVYREAVPSLLGGYITDKAKVHQGRLELFLREIARREPLYFQYRAKEDKDPQWQGDG----YKDHYYQSKLGIPPGESEASQQARRDVARSYLEGLYWVLTYYHEG 163 +LR+ML L+FKP + ++ F++ERI+DD++ MCM +GNDF+P LPH+ IA G LN+++ Y+E + GY+T K ++H GR+ELFL +I+ +F + +++ W G+G YK+ YY SKL + + ++ + + Y++GL W L YYH+G Sbjct: 260 LLRDMLYLEFKPKE---SWRFTFNIERIVDDFIFMCMLIGNDFLPSLPHLSIASGGLNLLVRSYKE-IQKDSKGYLTKKYQMHMGRVELFLEKISNEAEEFFFCQNEKN----WGGNGSTLDYKESYYSSKLNLDYSSGKDKKRLEK-LKSDYIQGLNWCLYYYHKG 417
BLAST of EWM20807.1 vs. NCBI_GenBank
Match: gi|330040606|ref|XP_003239969.1| (dhm exonuclease [Cryptomonas paramecium] >gi|327206895|gb|AEA39071.1| dhm exonuclease [Cryptomonas paramecium]) HSP 1 Score: 125.176 bits (313), Expect = 1.781e-30 Identity = 65/162 (40.12%), Postives = 99/162 (61.11%), Query Frame = 0 Query: 1 MLREMLRLQFKPLKFHPTFGPRFDLERIIDDYVLMCMFVGNDFIPHLPHMDIADGALNMMMAVYREAVPSLLGGYITDKAKVHQGRLELFLREIARREPLYFQYRAKEDKDPQWQGDGYKDHYYQSKLGIPPGESEASQQARRDVARSYLEGLYWVLTYYHE 162 +LR+M+ L+FKP K T ++D+ERIIDD++ MCM +GNDFIP LPH++I G LN+++ Y+E + L GY+T K ++H GR ELF R+I+ F +R K++K + YK YY SK + ++ ++Y+ GL+W L YYH+ Sbjct: 253 LLRDMIFLEFKPKK---TILFKYDVERIIDDFIFMCMLLGNDFIPGLPHLNITQGGLNLLVRSYKE-IQQKLDGYLTKKHQIHFGRAELFFRKISSEAESLFFFRRKQEKTGN---ETYKSSYYLSKFKF---TYQIEHGFLSNLIKNYIHGLHWCLFYYHK 404 The following BLAST results are available for this feature:
BLAST of EWM20807.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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