EWM20815.1, cds9858 (CDS) Nannochloropsis gaditana

Overview
NameEWM20815.1
Unique Namecds9858
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037257.1:62386..62464 -
Alignment locationKK037257.1:61769..62265 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20815.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100921g1.2976.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:62386..62464 -
KK037257.1supercontigKK037257.1:61769..62265 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM20815.1 vs. NCBI_GenBank
Match: gi|585100731|gb|EWM20815.1| (hypothetical protein Naga_100921g1 [Nannochloropsis gaditana])

HSP 1 Score: 381.333 bits (978), Expect = 8.706e-134
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0
Query:    1 METKRRRRRRRRRPQYGGLPLLILLLGLGSSSKIPALFSCLSTRASTTKRRKKGGRSFLGPSFPPTLPSSSSSCFSSSSTQPLNLPPTPPDDQVMAAPNPGASVSTSSPQPASASPNRRLHAPQALELEGEDSEGALKGPKRPKKTAQTVGSRAITALLHKHDGDVGALLDVIETHVGGFEKQNCAMAFNR 191
            METKRRRRRRRRRPQYGGLPLLILLLGLGSSSKIPALFSCLSTRASTTKRRKKGGRSFLGPSFPPTLPSSSSSCFSSSSTQPLNLPPTPPDDQVMAAPNPGASVSTSSPQPASASPNRRLHAPQALELEGEDSEGALKGPKRPKKTAQTVGSRAITALLHKHDGDVGALLDVIETHVGGFEKQNCAMAFNR
Sbjct:    1 METKRRRRRRRRRPQYGGLPLLILLLGLGSSSKIPALFSCLSTRASTTKRRKKGGRSFLGPSFPPTLPSSSSSCFSSSSTQPLNLPPTPPDDQVMAAPNPGASVSTSSPQPASASPNRRLHAPQALELEGEDSEGALKGPKRPKKTAQTVGSRAITALLHKHDGDVGALLDVIETHVGGFEKQNCAMAFNR 191          
BLAST of EWM20815.1 vs. NCBI_GenBank
Match: gi|553191828|ref|XP_005855465.1| (hypothetical protein NGA_0139500, partial [Nannochloropsis gaditana CCMP526] >gi|422293594|gb|EKU20894.1| hypothetical protein NGA_0139500, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 53.5286 bits (127), Expect = 6.888e-7
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 0
Query:   33 KIPALFSCLSTRASTTKRRKKGGRSF 58
            KIPALFSCLSTRASTTKRRKKGGRSF
Sbjct:   12 KIPALFSCLSTRASTTKRRKKGGRSF 37          
The following BLAST results are available for this feature:
BLAST of EWM20815.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585100731|gb|EWM20815.1|8.706e-134100.00hypothetical protein Naga_100921g1 [Nannochloropsi... [more]
gi|553191828|ref|XP_005855465.1|6.888e-7100.00hypothetical protein NGA_0139500, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9889rna9889Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications