rna9889, rna9889 (mRNA) Nannochloropsis gaditana

Overview
Namerna9889
Unique Namerna9889
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length552
Alignment locationKK037257.1:61769..62478 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100921g1.2976.mrna
Orig protein idgnl|cribi|Naga_100921g1.2976
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037257.1supercontigKK037257.1:61769..62478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100921g1gene9597Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9889rna9889-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20815.1cds9858Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9889 ID=rna9889|Name=rna9889|organism=Nannochloropsis gaditana|type=mRNA|length=552bp
AAGCGGCTCTAGACAAGGTTGTGACGCAGACAGCCTCCCACGCCTCACTC
AGGGCACCCACCGTCTCGCAACTTCAGGAGGAGGTGGGTGCGGCCTTGGT
CAAGATCTTCGGGGAGAATTTGAGGTACGAGGTGAGCGACGATGGTGTCT
TCGCCTACGACTTTATGCTGCAAGCCCCCTCCCGGTCCGCGCGTGCCAAG
AGTCCGAAAAGCCAAGGTGAGAGCTCAGTGTCTTTCCTCTTCCTTTCCTG
GTGCCTCTGGGGGCGATATGAGCCGGGCTAGAATGAAAAGCTTTTCAAGG
TTCTCCCTGGCCCCTTCCACCTTCACTCGTCTTCTCCTGCTCCTTATGCC
CCTTGTTGTACCTTCACTCGTCGTCTCTCCCTCCTTATGCCCCTCGTTGT
ACCTTCACTCGTCTTCTCCCGCTCCTTATGCCCGCACCCTCGGGAACCTT
TGCCTTGCCTGCCTCTCTTTCCTCGGACCATTTCCCTGACTTCCGATGCA
TGCCTGGCAGGGTGGCCATGCTCTTGCTCTTCCCGAGGATCCCCTCCCTC
CC
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protein sequence of rna9889

>rna9889-protein ID=rna9889-protein|Name=rna9889|organism=Nannochloropsis gaditana|type=polypeptide|length=191bp
METKRRRRRRRRRPQYGGLPLLILLLGLGSSSKIPALFSCLSTRASTTKR
RKKGGRSFLGPSFPPTLPSSSSSCFSSSSTQPLNLPPTPPDDQVMAAPNP
GASVSTSSPQPASASPNRRLHAPQALELEGEDSEGALKGPKRPKKTAQTV
GSRAITALLHKHDGDVGALLDVIETHVGGFEKQNCAMAFNR
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mRNA from alignment at KK037257.1:61769..62478-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9889 ID=rna9889|Name=rna9889|organism=Nannochloropsis gaditana|type=mRNA|length=710bp|location=Sequence derived from alignment at KK037257.1:61769..62478- (Nannochloropsis gaditana)
AACCACGCAGAGCCATGGAAACAAAAAGGAGGAGACGGAGACGAAGGAGA
CGTCCACAGTATGGGGGACTTCCCCTACTCATTCTGCTGCTAGGTAACTA
CATAGTCTGCTTTTTCAAACCTTTGCTTCGTCTTCCTTTTGTCCGTTCCT
CGCGACGATCTCCTGGCACAAATTAGATGATTACTTACCGTGATGATGTG
TCTTTACATACAGGCCTCGGGAGCTCCTCTAAGATTCCCGCATTGTTTTC
CTGTCTCTCGACGCGTGCGTCGACGACAAAGCGGAGAAAAAAGGGTGGGA
GGTCGTTCCTGGGCCCCTCGTTCCCCCCCACCCTCCCCTCTTCCTCCTCC
TCTTGCTTTTCGTCGTCTTCCACCCAGCCCTTGAACCTGCCACCGACGCC
TCCCGATGATCAGGTTATGGCTGCCCCAAATCCTGGAGCGTCAGTCTCCA
CTTCATCCCCGCAACCAGCGTCGGCGTCCCCAAACCGAAGGTTGCATGCC
CCGCAGGCCCTGGAATTGGAAGGAGAAGACTCCGAAGGAGCATTAAAAGG
GCCAAAAAGGCCGAAAAAGACGGCTCAAACGGTGGGGAGCCGGGCCATTA
CCGCCCTCTTGCACAAGCACGACGGGGACGTGGGGGCCCTCCTGGACGTG
ATCGAGACGCACGTGGGCGGGTTCGAGAAGCAAAACTGTGCCATGGCCTT
CAACCGGTAG
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Coding sequence (CDS) from alignment at KK037257.1:61769..62478-

>rna9889 ID=rna9889|Name=rna9889|organism=Nannochloropsis gaditana|type=CDS|length=1152bp|location=Sequence derived from alignment at KK037257.1:61769..62478- (Nannochloropsis gaditana)
GCCTCGGGAGCTCCTCTAAGATTCCCGCATTGTTTTCCTGTCTCTCGACG
CGTGCGTCGACGACAAAGCGGAGAAAAAAGGGTGGGAGGTCGTTCCTGGG
CCCCTCGTTCCCCCCCACCCTCCCCTCTTCCTCCTCCTCTTGCTTTTCGT
CGTCTTCCACCCAGCCCTTGAACCTGCCACCGACGCCTCCCGATGATCAG
GTTATGGCTGCCCCAAATCCTGGAGCGTCAGTCTCCACTTCATCCCCGCA
ACCAGCGTCGGCGTCCCCAAACCGAAGGTTGCATGCCCCGCAGGCCCTGG
AATTGGAAGGAGAAGACTCCGAAGGAGCATTAAAAGGGCCAAAAAGGCCG
AAAAAGACGGCTCAAACGGTGGGGAGCCGGGCCATTACCGCCCTCTTGCA
CAAGCACGACGGGGACGTGGGGGCCCTCCTGGACGTGATCGAGACGCACG
TGGGCGGGTTCGAGAAGCAAAACTGTGCCATGGCCTTCAACCGGTAGATG
GAAACAAAAAGGAGGAGACGGAGACGAAGGAGACGTCCACAGTATGGGGG
ACTTCCCCTACTCATTCTGCTGCTAGGCCTCGGGAGCTCCTCTAAGATTC
CCGCATTGTTTTCCTGTCTCTCGACGCGTGCGTCGACGACAAAGCGGAGA
AAAAAGGGTGGGAGGTCGTTCCTGGGCCCCTCGTTCCCCCCCACCCTCCC
CTCTTCCTCCTCCTCTTGCTTTTCGTCGTCTTCCACCCAGCCCTTGAACC
TGCCACCGACGCCTCCCGATGATCAGGTTATGGCTGCCCCAAATCCTGGA
GCGTCAGTCTCCACTTCATCCCCGCAACCAGCGTCGGCGTCCCCAAACCG
AAGGTTGCATGCCCCGCAGGCCCTGGAATTGGAAGGAGAAGACTCCGAAG
GAGCATTAAAAGGGCCAAAAAGGCCGAAAAAGACGGCTCAAACGGTGGGG
AGCCGGGCCATTACCGCCCTCTTGCACAAGCACGACGGGGACGTGGGGGC
CCTCCTGGACGTGATCGAGACGCACGTGGGCGGGTTCGAGAAGCAAAACT
GTGCCATGGCCTTCAACCGGTAGATGGAAACAAAAAGGAGGAGACGGAGA
CGAAGGAGACGTCCACAGTATGGGGGACTTCCCCTACTCATTCTGCTGCT
AG
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Synonyms
Publications