rna9888, rna9888 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9888
Unique Name	rna9888
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1585
Alignment location	KK037257.1:59026..59809 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_102565g1.9434.mrna
Orig protein id	gnl\|cribi\|Naga_102565g1.9434
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037257.1	supercontig	KK037257.1:59026..59809 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_102565g1	gene9596	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20816.1	cds9857	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9888	rna9888-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037257.1:59026..59809-
coding sequence from alignment at KK037257.1:59026..59809-

mRNA sequence

>rna9888 ID=rna9888|Name=rna9888|organism=Nannochloropsis gaditana|type=mRNA|length=1585bp
CGGCCCCTCCATTTCCGCCTGAACGACATCCAATGCCCCATGGCGACACT
GCCTTCAAACGCCGCCTCGTCCGCGCGCAGACCCATTCCTACGCTGGTTT
GGTTCCCATCCCGTGGTTCGACTGGCGCCAAGCGACCTCCCTCCTGAAGA
AAGGGAGGACCGGGCAGGGCGCGTCCGAGAGGATGCGGGACGTAGAGGGC
TACCTGCGCAAGGCGTTCAGAAAATAGGAAATCGTGCCATACTTGCATGA
TTGTAGGATAGATGAGGGGCGAAGGTCAGCTGTAGGAGAGGAATCTGTGA
GAGTTAAGGTTACAGTTAGGGCCAATAAGAGCATTGGCGGACTACTGCCC
AAACGAGAGAGGAGGGACGTGAACGTCTCCACCTCCCAAGCCTCACACAG
GCCCACTTCCAACCCTTTATCTGCCTCCCTCCCTTTTCCTTCATCCTCCC
TCCCTTTTCCTTCATTCTCCCTCCCTTTTCCTTCATCCTCCCTCCCTTCT
CCTTCATCCTCCCTCCCTTTTCCTTCATCCTCCCTGACGCAGGGCGGAGG
GTCTCTCCATGGAGGACTACCTCCCTTCTCACGCCAACCGCTCCGTGCCT
GCCCCGCCCCCTCCCTCCTTCCCTCCCTCTTCCTCCCCTCCTCTCCCGGC
GCCCAGAGCCAGGACCCGCCAGACGCCGGCTACTAAAAAAAGTCTCCCCG
TCTACCCCTGCCTCATCGATACCCCTCCCTCCTTCCCTCCCTGCTATCAA
TAACCGCCACTCTCTGAGAAAAGTGACTTCCGCGACGGTTGTCTCGGAGA
TGGAAGCTCCGAAAAAGAGGCGTGGACGCCCAGCAAAGAGGAAAATGGAC
ACAAAGGAGGAAGAAAGCAGAGAGAGTGGGGGAAGGGGGGGGCGGATGGC
CGGGGGAGGGGCAGGAGGGACGAAGGAAAGGAAGACGCAGCCGGAAAAAG
GAGGAAGATGGAAAGGAATTCCAGGATCAGACCGACTTGTCACCGGCCGA
AGCGACGGAAGTGGCAGAGGGCTCTCCCAAAGAGAAAAGTGGACGTGCTC
GGAGTGGAGCCACCGCTCCAGTGGAATCGAGGAGAAAGAAATCGAAAGTG
CCTCAAGCAATCGCAGAGTCGTCGATGGACGGGAGTACACGGAACGAGAA
GTTTGTTTCGCGGTCAGGATTGACTAATGAGAATATGTAGACCGACGGGG
AATACATGCCAAGAGAGAGAAACGCCCCTGAATGTGGGCGGAAGAAGGGA
GGTCGCAGACGAGAAACAAATCATAGAACCACAGTGAAATTAGGTCATGA
CTAGACTTGAGAATATTAGCGGCTAATTCATATGGGCTCAACGGGTTTCG
ATTGATCTGAAAGATTATAATGAAGCTCTCTTTGGTGACGATATCGCACC
TTTACCTTCGATGCAAAGGGCAGGTAGGACTAGGTGTAATGGTCATACTC
CGTCATCGAAAAAGTACACGTGCGCATGTATATATAGTGGAAAAGAATGA
CCCTGGTTGACCGAGTGAAATGGCTTTACTCAATTTGTGTTGTCCTTCTC
ATTTGAAAACGCTTTAAAGTTAACCTCCCCTGTCC

protein sequence of rna9888

>rna9888-protein ID=rna9888-protein|Name=rna9888|organism=Nannochloropsis gaditana|type=polypeptide|length=115bp
MVSSPTTLCCKPPPGPRVPRVRKAKVRAQCLSSSFPGASGGDMSRARMKS
FSRFSLAPSTFTRLLLLLMPLVVPSLVVSPSLCPSLYLHSSSPAPYARTL
GNLCLACLSFLGPFP

mRNA from alignment at KK037257.1:59026..59809-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9888 ID=rna9888|Name=rna9888|organism=Nannochloropsis gaditana|type=mRNA|length=784bp|location=Sequence derived from alignment at KK037257.1:59026..59809- (Nannochloropsis gaditana)
AAGCGGCTCTAGACAAGGTTGTGACGCAGACAGCCTCCCACGGTGCGCCC
TCCCCCGCCCCCTCCTTCCCTCCTTCCCTCCCTCTCTCCCTCCCGCCCCG
CTTCTCAACCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTTTTTTCC
CTCCTCTAGCCTCACTCAGGGCACCCACCGTCTCGCAACTTCAGGAGGAG
GTGGGTGCGGCCTTGGTCAAGATCTTCGGGGAGAATTTGAGGTTTAAAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGCGGGGGGAGGGAAGGATTG
AGTGCGTATATATAGACATGTGTAGCATTGACAGCTCCCTTGGCATGGAT
TGACAGGTACGAGGTGAGCGACGATGGTGTCTTCGCCTACGACTTTATGC
TGCAAGCCCCCTCCCGGTCCGCGCGTGCCAAGAGTCCGAAAAGCCAAGGT
GAGAGCTCAGTGTCTTTCCTCTTCCTTTCCTGGTGCCTCTGGGGGCGATA
TGAGCCGGGCTAGAATGAAAAGCTTTTCAAGGTTCTCCCTGGCCCCTTCC
ACCTTCACTCGTCTTCTCCTGCTCCTTATGCCCCTTGTTGTACCTTCACT
CGTCGTCTCTCCCTCCTTATGCCCCTCGTTGTACCTTCACTCGTCTTCTC
CCGCTCCTTATGCCCGCACCCTCGGGAACCTTTGCCTTGCCTGCCTCTCT
TTCCTCGGACCATTTCCCTGACTTCCGATGCATGCCTGGCAGGGTGGCCA
TGCTCTTGCTCTTCCCGAGGATCCCCTCCCTCCC

Coding sequence (CDS) from alignment at KK037257.1:59026..59809-

>rna9888 ID=rna9888|Name=rna9888|organism=Nannochloropsis gaditana|type=CDS|length=348bp|location=Sequence derived from alignment at KK037257.1:59026..59809- (Nannochloropsis gaditana)
ATGGTGTCTTCGCCTACGACTTTATGCTGCAAGCCCCCTCCCGGTCCGCG
CGTGCCAAGAGTCCGAAAAGCCAAGGTGAGAGCTCAGTGTCTTTCCTCTT
CCTTTCCTGGTGCCTCTGGGGGCGATATGAGCCGGGCTAGAATGAAAAGC
TTTTCAAGGTTCTCCCTGGCCCCTTCCACCTTCACTCGTCTTCTCCTGCT
CCTTATGCCCCTTGTTGTACCTTCACTCGTCGTCTCTCCCTCCTTATGCC
CCTCGTTGTACCTTCACTCGTCTTCTCCCGCTCCTTATGCCCGCACCCTC
GGGAACCTTTGCCTTGCCTGCCTCTCTTTCCTCGGACCATTTCCCTGA

Synonyms

Publications