EWM20824.1, cds9850 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20824.1 vs. NCBI_GenBank
Match: gi|585100746|gb|EWM20824.1| (dihydrodipicolinate synthetase [Nannochloropsis gaditana]) HSP 1 Score: 646.736 bits (1667), Expect = 0.000e+0 Identity = 314/314 (100.00%), Postives = 314/314 (100.00%), Query Frame = 0 Query: 1 MRGIFAPVLTPFLPSGAPDITRFLRHARWLLSYDVNLAIFGTNSEASSMTTSEKLTLLHTLVEEGKADPNRLMPGTGACAVGDAVTLSKASVRLGCGGVLVLPPFYYKGVGDEGVFRYYARLIEQVADERLRVYLYHIPQVSGVGISHSLIERLMKAYPGIIAGIKDSAGDWKHTASLITHFARSGKGLATEGSGAYLRVFAGSEAFLLRTLRAGGQGCISATANVNPARIVELYHQHETSQADRLQDACQRLREAFPPHALIPSMKATIAHFTHDKGWERVRPPLVELEEEEKESLLRRLHELKFKMPDPGTC 314 MRGIFAPVLTPFLPSGAPDITRFLRHARWLLSYDVNLAIFGTNSEASSMTTSEKLTLLHTLVEEGKADPNRLMPGTGACAVGDAVTLSKASVRLGCGGVLVLPPFYYKGVGDEGVFRYYARLIEQVADERLRVYLYHIPQVSGVGISHSLIERLMKAYPGIIAGIKDSAGDWKHTASLITHFARSGKGLATEGSGAYLRVFAGSEAFLLRTLRAGGQGCISATANVNPARIVELYHQHETSQADRLQDACQRLREAFPPHALIPSMKATIAHFTHDKGWERVRPPLVELEEEEKESLLRRLHELKFKMPDPGTC Sbjct: 1 MRGIFAPVLTPFLPSGAPDITRFLRHARWLLSYDVNLAIFGTNSEASSMTTSEKLTLLHTLVEEGKADPNRLMPGTGACAVGDAVTLSKASVRLGCGGVLVLPPFYYKGVGDEGVFRYYARLIEQVADERLRVYLYHIPQVSGVGISHSLIERLMKAYPGIIAGIKDSAGDWKHTASLITHFARSGKGLATEGSGAYLRVFAGSEAFLLRTLRAGGQGCISATANVNPARIVELYHQHETSQADRLQDACQRLREAFPPHALIPSMKATIAHFTHDKGWERVRPPLVELEEEEKESLLRRLHELKFKMPDPGTC 314
BLAST of EWM20824.1 vs. NCBI_GenBank
Match: gi|1196393485|ref|WP_086076779.1| (dihydrodipicolinate synthase family protein [Bordetella genomosp. 13] >gi|1190218347|gb|ARP92941.1| dihydrodipicolinate synthase family protein [Bordetella genomosp. 13]) HSP 1 Score: 341.658 bits (875), Expect = 2.983e-114 Identity = 167/310 (53.87%), Postives = 219/310 (70.65%), Query Frame = 0 Query: 1 MRGIFAPVLTPFLPSGAPDITRFLRHARWLLSYDVNLAIFGTNSEASSMTTSEKLTLLHTLVEEGKADPNRLMPGTGACAVGDAVTLSKASVRLGCGGVLVLPPFYYKGVGDEGVFRYYARLIEQVADERLRVYLYHIPQVSGVGISHSLIERLMKAYPGIIAGIKDSAGDWKHTASLITHFARSGKGLATEGSGAYLRVFAGSEAFLLRTLRAGGQGCISATANVNPARIVELYHQHETSQADRLQDACQRLREAFPPHALIPSMKATIAHFTHDKGWERVRPPLVELEEEEKESLLRRLHELKFKMPD 310 + G+F+PVLTPF +G P RF++H RWL + DV LA+FGTNSEA+S+T +EK LL L+ G +P+ LMPGTGACA+ DA+TL++++V+ GC GVLVLPPFYYKGV DEG+FRY+A LIE VADERLR+YLYHIP V+ V IS LI+RL+ YPGI+AG+KDS+GDW +T++++ A G +VFAGSE FLLRTLR GG GCI+AT NVNP IVEL+ + + AD+ Q A R F + +IP+MKA IA + D W VR PLVEL++ + ++L L ++ F MPD Sbjct: 7 LSGVFSPVLTPFDAAGRPSAERFVKHCRWLRNQDVGLAVFGTNSEANSLTVAEKQQLLEALLAAG-VEPSALMPGTGACALPDAITLTRSAVQAGCAGVLVLPPFYYKGVSDEGLFRYFAGLIEGVADERLRIYLYHIPPVAQVPISLDLIDRLLDRYPGIVAGVKDSSGDWNNTSAMLERHAPRG-----------FQVFAGSEVFLLRTLRGGGAGCITATGNVNPGPIVELFRHWQDADADQRQAALDATRGVFQRYPMIPAMKAAIAWQSGDAEWRHVRAPLVELDKAQADALCAELEKVGFNMPD 304
BLAST of EWM20824.1 vs. NCBI_GenBank
Match: gi|524552934|dbj|GAD21257.1| (dihydrodipicolinate synthase/N-acetylneuraminate lyase [Acidovorax sp. MR-S7]) HSP 1 Score: 337.806 bits (865), Expect = 1.266e-112 Identity = 174/309 (56.31%), Postives = 207/309 (66.99%), Query Frame = 0 Query: 1 MRGIFAPVLTPFLPSGAPDITRFLRHARWLLSYDVNLAIFGTNSEASSMTTSEKLTLLHTLVEEGKADPNRLMPGTGACAVGDAVTLSKASVRLGCGGVLVLPPFYYKGVGDEGVFRYYARLIEQVADERLRVYLYHIPQVSGVGISHSLIERLMKAYPGIIAGIKDSAGDWKHTASLITHFARSGKGLATEGSGAYLRVFAGSEAFLLRTLRAGGQGCISATANVNPARIVELYHQHETSQADRLQDACQRLREAFPPHALIPSMKATIAHFTHDKGWERVRPPLVELEEEEKESLLRRLHELKFKMP 309 +RG+ +PVLTPF G P +RFLRH RWLL V LA+FGTNSEA+S+T EK LL L G RLMPGTGACA+ DAV L++ +V+LGC GVL+LPPF+YKGV DEG+FR +A++I+ VADERLR+YLYHIP V+ VGIS +LIERLM YPG IAGIKDS GDW+HTA L+ + +G L VFAG+E LL T+RAGG GCI+AT NVNPA I LY + AD Q +R AF H +IP+MKA IA T D W VRPPLVEL E LL L L F MP Sbjct: 8 LRGVLSPVLTPFEADGTPSASRFLRHCRWLLEQQVGLAVFGTNSEANSLTVGEKRALLDHLAASGIPG-ARLMPGTGACALPDAVELTRHAVQLGCAGVLMLPPFFYKGVSDEGLFRGFAQVIDAVADERLRIYLYHIPPVAQVGISPALIERLMARYPGTIAGIKDSGGDWQHTALLLREYQPAG-----------LDVFAGNETLLLDTMRAGGAGCITATGNVNPAAIAALYRHWQEPDADARQQHLNAVRAAFQAHPIIPAMKAVIARHTGDGAWAAVRPPLVELGPEPLRILLHALDALDFGMP 304
BLAST of EWM20824.1 vs. NCBI_GenBank
Match: gi|519071437|ref|WP_020227312.1| (dihydrodipicolinate synthase family protein [Acidovorax sp. MR-S7]) HSP 1 Score: 337.806 bits (865), Expect = 1.338e-112 Identity = 174/309 (56.31%), Postives = 207/309 (66.99%), Query Frame = 0 Query: 1 MRGIFAPVLTPFLPSGAPDITRFLRHARWLLSYDVNLAIFGTNSEASSMTTSEKLTLLHTLVEEGKADPNRLMPGTGACAVGDAVTLSKASVRLGCGGVLVLPPFYYKGVGDEGVFRYYARLIEQVADERLRVYLYHIPQVSGVGISHSLIERLMKAYPGIIAGIKDSAGDWKHTASLITHFARSGKGLATEGSGAYLRVFAGSEAFLLRTLRAGGQGCISATANVNPARIVELYHQHETSQADRLQDACQRLREAFPPHALIPSMKATIAHFTHDKGWERVRPPLVELEEEEKESLLRRLHELKFKMP 309 +RG+ +PVLTPF G P +RFLRH RWLL V LA+FGTNSEA+S+T EK LL L G RLMPGTGACA+ DAV L++ +V+LGC GVL+LPPF+YKGV DEG+FR +A++I+ VADERLR+YLYHIP V+ VGIS +LIERLM YPG IAGIKDS GDW+HTA L+ + +G L VFAG+E LL T+RAGG GCI+AT NVNPA I LY + AD Q +R AF H +IP+MKA IA T D W VRPPLVEL E LL L L F MP Sbjct: 9 LRGVLSPVLTPFEADGTPSASRFLRHCRWLLEQQVGLAVFGTNSEANSLTVGEKRALLDHLAASGIPG-ARLMPGTGACALPDAVELTRHAVQLGCAGVLMLPPFFYKGVSDEGLFRGFAQVIDAVADERLRIYLYHIPPVAQVGISPALIERLMARYPGTIAGIKDSGGDWQHTALLLREYQPAG-----------LDVFAGNETLLLDTMRAGGAGCITATGNVNPAAIAALYRHWQEPDADARQQHLNAVRAAFQAHPIIPAMKAVIARHTGDGAWAAVRPPLVELGPEPLRILLHALDALDFGMP 305
BLAST of EWM20824.1 vs. NCBI_GenBank
Match: gi|1094479041|emb|SEL94600.1| (4-hydroxy-tetrahydrodipicolinate synthase [Halomonas daqiaonensis]) HSP 1 Score: 336.65 bits (862), Expect = 3.751e-112 Identity = 170/305 (55.74%), Postives = 209/305 (68.52%), Query Frame = 0 Query: 4 IFAPVLTPFLPSGAPDITRFLRHARWLLSYDVNLAIFGTNSEASSMTTSEKLTLLHTLVEEGKADPNRLMPGTGACAVGDAVTLSKASVRLGCGGVLVLPPFYYKGVGDEGVFRYYARLIEQVADERLRVYLYHIPQVSGVGISHSLIERLMKAYPGIIAGIKDSAGDWKHTASLITHFARSGKGLATEGSGAYLRVFAGSEAFLLRTLRAGGQGCISATANVNPARIVELYHQHETSQADRLQDACQRLREAFPPHALIPSMKATIAHFTHDKGWERVRPPLVELEEEEKESLLRRLHELKFKM 308 +++PV+TPF A DI RF+ H +WL+S+ V LA+FGTNSEA+S+T EK LL LVE G DP RLMPGTG CA+GD+V L++ +V GC GVL+LPPFYYKGV DEG+FR+Y+ +IE+V D RLR+YLYHIP V+ V +S LIERL A+PG IAGIKDS GDW HT +LI FA G V+AGSE FLL TLRAGG GCISATANVNP I L + AD Q A LR+ F + LIP+MKA AHF+ W RVRPPLVEL++E +L+ L E+ F+M Sbjct: 18 VWSPVITPFGADLAADIRRFVAHCQWLVSHRVGLAVFGTNSEANSLTVGEKQQLLGALVE-GGVDPARLMPGTGQCAIGDSVALTREAVAAGCAGVLMLPPFYYKGVSDEGLFRFYSEVIERVGDSRLRLYLYHIPPVAQVPLSLELIERLRDAFPGTIAGIKDSGGDWSHTQALIDSFA-----------GDDFAVYAGSERFLLDTLRAGGAGCISATANVNPGAIAGLAASWQVEDADDRQQALNVLRDLFERYPLIPAMKAATAHFSGVADWRRVRPPLVELDDERAATLVSSLEEMGFRM 310
BLAST of EWM20824.1 vs. NCBI_GenBank
Match: gi|1099865772|emb|SFP22497.1| (4-hydroxy-tetrahydrodipicolinate synthase [Variovorax sp. 770b2]) HSP 1 Score: 335.88 bits (860), Expect = 5.621e-112 Identity = 169/309 (54.69%), Postives = 209/309 (67.64%), Query Frame = 0 Query: 1 MRGIFAPVLTPFLPSGAPDITRFLRHARWLLSYDVNLAIFGTNSEASSMTTSEKLTLLHTLVEEGKADPNRLMPGTGACAVGDAVTLSKASVRLGCGGVLVLPPFYYKGVGDEGVFRYYARLIEQVADERLRVYLYHIPQVSGVGISHSLIERLMKAYPGIIAGIKDSAGDWKHTASLITHFARSGKGLATEGSGAYLRVFAGSEAFLLRTLRAGGQGCISATANVNPARIVELYHQHETSQADRLQDACQRLREAFPPHALIPSMKATIAHFTHDKGWERVRPPLVELEEEEKESLLRRLHELKFKMP 309 +RG+ +PVLTPF +P + RF+ H RWLL V L++FGTNSEA+S+T EK LL L+E G P+RLMPGTG CA GD + L++ +V GC GVL+LPPF+YKGV DEG+FR +AR+I+ VADERLR+YLYHIP VS VG+S +LIERL+KAYP +AGIKDS+GDW HTA+L+ F G VFAG+E LL TLR GG GCI+AT NVNPA IV+LY + AD Q A R AF +I +MKATIA T D GW RVRPPLVE+E ++ L L F+MP Sbjct: 6 LRGVLSPVLTPFDADLSPSVPRFVGHCRWLLDQGVGLSVFGTNSEANSLTVQEKRGLLDALLEAG-VSPDRLMPGTGTCAPGDTIELTRHAVAAGCAGVLMLPPFFYKGVSDEGLFRSFARVIDAVADERLRIYLYHIPPVSQVGLSLALIERLLKAYPRTVAGIKDSSGDWNHTAALLREFQPQG-----------FDVFAGTETVLLPTLRGGGAGCITATGNVNPAAIVDLYAHWTEADADDRQAALDATRAAFQKLPMIAAMKATIARQTGDAGWARVRPPLVEIEAAQRAMLAADLDACGFRMP 302
BLAST of EWM20824.1 vs. NCBI_GenBank
Match: gi|494593108|ref|WP_007351700.1| (dihydrodipicolinate synthase family protein [Marinobacter sp. ELB17] >gi|126627436|gb|EAZ98070.1| Dihydrodipicolinate synthetase [Marinobacter sp. ELB17]) HSP 1 Score: 335.88 bits (860), Expect = 6.290e-112 Identity = 164/308 (53.25%), Postives = 210/308 (68.18%), Query Frame = 0 Query: 3 GIFAPVLTPFLPSGAPDITRFLRHARWLLSYDVNLAIFGTNSEASSMTTSEKLTLLHTLVEEGKADPNRLMPGTGACAVGDAVTLSKASVRLGCGGVLVLPPFYYKGVGDEGVFRYYARLIEQVADERLRVYLYHIPQVSGVGISHSLIERLMKAYPGIIAGIKDSAGDWKHTASLITHFARSGKGLATEGSGAYLRVFAGSEAFLLRTLRAGGQGCISATANVNPARIVELYHQHETSQADRLQDACQRLREAFPPHALIPSMKATIAHFTHDKGWERVRPPLVELEEEEKESLLRRLHELKFKMPD 310 +++PV+TPF +PD+ R + H RWL+S V LA+FGTNSEA+S+T EK+ LL LV G +RLMPGTG+C++GD VTLS+ +V LGC GVL+LPPFYYKGV DEG+FRYYA +IE++ D RLRVYLYHIP V+ V IS L+ERL+KAYP + GIKDS+GDW +T +LI F+ G +V+AGSE FLL TLRAGG GCISATANVNP I L + S AD Q + R+R F +IP++KA H++ +K W R+RPPLVEL ++ LL L F+MPD Sbjct: 11 NVWSPVITPFGIDLSPDVERLVSHCRWLISQGVGLAVFGTNSEANSLTVVEKVALLEALVAAG-IPADRLMPGTGSCSIGDTVTLSRRAVELGCAGVLMLPPFYYKGVSDEGLFRYYAEVIERIGDARLRVYLYHIPPVAQVPISLPLVERLIKAYPSSVVGIKDSSGDWSNTQALIDKFSEQG-----------FQVYAGSERFLLATLRAGGAGCISATANVNPEAIARLGKSWQQSDADEQQASLNRVRAVFEQFQMIPALKAATGHYSGEKDWLRIRPPLVELSADKSRELLSLLDAEHFEMPD 306
BLAST of EWM20824.1 vs. NCBI_GenBank
Match: gi|1054639389|ref|WP_066406924.1| (dihydrodipicolinate synthase family protein [Bordetella ansorpii] >gi|1018191094|emb|SAH84163.1| dihydrodipicolinate synthase [Bordetella ansorpii]) HSP 1 Score: 335.109 bits (858), Expect = 1.144e-111 Identity = 165/310 (53.23%), Postives = 213/310 (68.71%), Query Frame = 0 Query: 1 MRGIFAPVLTPFLPSGAPDITRFLRHARWLLSYDVNLAIFGTNSEASSMTTSEKLTLLHTLVEEGKADPNRLMPGTGACAVGDAVTLSKASVRLGCGGVLVLPPFYYKGVGDEGVFRYYARLIEQVADERLRVYLYHIPQVSGVGISHSLIERLMKAYPGIIAGIKDSAGDWKHTASLITHFARSGKGLATEGSGAYLRVFAGSEAFLLRTLRAGGQGCISATANVNPARIVELYHQHETSQADRLQDACQRLREAFPPHALIPSMKATIAHFTHDKGWERVRPPLVELEEEEKESLLRRLHELKFKMPD 310 + G+F+PVLTPF G P RF++H RWL DV LA+FGTNSEA+S+T +EK LL L+E G +P+ LMPGTGACA+ DA+ L++ +V+ GC GVLVLPPFYYKGV DEG+FRY+A LIE VADERLR++LYHIP V+ V IS LI+RL+ YPGI+AG+KDS+GDW +T++++ A G +VFAGSE FLLRTLR GG GCI+AT NVNP IVEL+ + + AD Q R F + +IP+MKA IA + D W VR PLVELE+ + ++L L + F MP+ Sbjct: 7 LSGVFSPVLTPFDAQGRPSTERFVKHCRWLRGQDVGLAVFGTNSEANSLTVAEKQKLLAALLEAG-VEPSALMPGTGACALPDAIELTRTAVQAGCAGVLVLPPFYYKGVSDEGLFRYFAGLIEGVADERLRIFLYHIPPVAQVPISLDLIDRLLDRYPGIVAGVKDSSGDWANTSAMLERHAPRG-----------FQVFAGSEVFLLRTLRGGGAGCITATGNVNPGPIVELFKHWQDADADERQAGLDTTRAIFQRYPMIPAMKAAIAWQSGDADWRHVRAPLVELEKSQADALCAELEKSGFSMPN 304
BLAST of EWM20824.1 vs. NCBI_GenBank
Match: gi|1088929658|emb|SDW88822.1| (4-hydroxy-tetrahydrodipicolinate synthase [Aidingimonas halophila]) HSP 1 Score: 334.339 bits (856), Expect = 2.453e-111 Identity = 170/305 (55.74%), Postives = 207/305 (67.87%), Query Frame = 0 Query: 4 IFAPVLTPFLPSGAPDITRFLRHARWLLSYDVNLAIFGTNSEASSMTTSEKLTLLHTLVEEGKADPNRLMPGTGACAVGDAVTLSKASVRLGCGGVLVLPPFYYKGVGDEGVFRYYARLIEQVADERLRVYLYHIPQVSGVGISHSLIERLMKAYPGIIAGIKDSAGDWKHTASLITHFARSGKGLATEGSGAYLRVFAGSEAFLLRTLRAGGQGCISATANVNPARIVELYHQHETSQADRLQDACQRLREAFPPHALIPSMKATIAHFTHDKGWERVRPPLVELEEEEKESLLRRLHELKFKM 308 +++PV+ PF APD F+ H RWL S+ V LA+FGTNSEA+SMT +EK LL LVE G DP RLMPGTG CA+GD+VTL++ ++ +GC GVL+LPPFYYKGV DEG+FRYY+ +IE+V D RL+VYLYHIP V+ V +S LIERL A+PG IAGIKDS GDW HT +LI F G V+AGSE FLL TLRAGG GCISATANVNP I L + AD Q + +R+ F LIP+MKA AHF+ GW RVRPPLVEL+EE L+ L E+ F+M Sbjct: 8 VWSPVIMPFGADLAPDARGFVSHCRWLASHGVGLAVFGTNSEANSMTVAEKQGLLAALVE-GGIDPARLMPGTGHCAIGDSVTLTREALAVGCDGVLMLPPFYYKGVSDEGLFRYYSEVIERVGDSRLQVYLYHIPPVAQVPLSLELIERLRNAFPGTIAGIKDSGGDWSHTQALIERFG-----------GGDFAVYAGSERFLLDTLRAGGAGCISATANVNPGAIAGLGANWQAEDADTRQRSLNTVRDLFERFPLIPAMKAATAHFSGAPGWRRVRPPLVELDEERTGELVSALEEIGFRM 300
BLAST of EWM20824.1 vs. NCBI_GenBank
Match: gi|750505529|ref|WP_040787399.1| (dihydrodipicolinate synthase family protein [Massilia niastensis]) HSP 1 Score: 332.798 bits (852), Expect = 7.802e-111 Identity = 172/309 (55.66%), Postives = 210/309 (67.96%), Query Frame = 0 Query: 1 MRGIFAPVLTPFLPSGAPDITRFLRHARWLLSYDVNLAIFGTNSEASSMTTSEKLTLLHTLVEEGKADPNRLMPGTGACAVGDAVTLSKASVRLGCGGVLVLPPFYYKGVGDEGVFRYYARLIEQVADERLRVYLYHIPQVSGVGISHSLIERLMKAYPGIIAGIKDSAGDWKHTASLITHFARSGKGLATEGSGAYLRVFAGSEAFLLRTLRAGGQGCISATANVNPARIVELYHQHETSQADRLQDACQRLREAFPPHALIPSMKATIAHFTHDKGWERVRPPLVELEEEEKESLLRRLHELKFKMP 309 +RG+F+PVLTPF P + RF RH WLL DV L+IFGTNSEA+S+T +EK LL L++ R+MPGTGACA+GDAV L++ +V GCGGVL+LPPFYYKGV DEG+FR +A LI+ VADERLR+YLYHIP V+ V IS LIERL+KAYPG IAG+KDSAGDW HT +++ +F G VFAGSE FLL +RAGG GCI+AT NVNPA +V LY AD Q A + R F +IP+MKA IA T D GW VRPPLVEL ++++ L LH+L F MP Sbjct: 7 LRGVFSPVLTPFNADLTPSVERFTRHCAWLLKQDVGLSIFGTNSEATSLTLAEKHRLLDALLDA-GLPAGRMMPGTGACALGDAVELTRHAVEAGCGGVLMLPPFYYKGVSDEGLFRSFAALIDAVADERLRIYLYHIPPVTQVPISLGLIERLLKAYPGTIAGVKDSAGDWSHTEAMLRNFQPEG-----------FDVFAGSETFLLANMRAGGAGCITATGNVNPAPMVALYESWRQEGADEQQRALDQTRAVFQQFPMIPAMKAAIAWKTGDDGWRAVRPPLVELAPDQRDRLESGLHQLGFSMP 303 The following BLAST results are available for this feature:
BLAST of EWM20824.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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