EWM20825.1, cds9848 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20825.1 vs. NCBI_GenBank
Match: gi|585100749|gb|EWM20825.1| (ring-box protein [Nannochloropsis gaditana]) HSP 1 Score: 290.426 bits (742), Expect = 1.691e-99 Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 Query: 1 MAEEAKGAVGMDEDRPVPHGGGAEEGSGLGGSTSGSTSGAAAPRFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 140 MAEEAKGAVGMDEDRPVPHGGGAEEGSGLGGSTSGSTSGAAAPRFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI Sbjct: 1 MAEEAKGAVGMDEDRPVPHGGGAEEGSGLGGSTSGSTSGAAAPRFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 140
BLAST of EWM20825.1 vs. NCBI_GenBank
Match: gi|298714696|emb|CBJ27621.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 200.675 bits (509), Expect = 4.114e-64 Identity = 91/101 (90.10%), Postives = 94/101 (93.07%), Query Frame = 0 Query: 39 GAAAPRFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALG 139 G APRFEIKKWNAV MWSWDICADTCAICRN+LNEPSIEYQANPSPNNENGLSIAFGCC HVFHLDCIQRWLK RSVCPLCNKEWEF+KIERIPGY +L Sbjct: 27 GQVAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHVFHLDCIQRWLKTRSVCPLCNKEWEFAKIERIPGYGSLA 127
BLAST of EWM20825.1 vs. NCBI_GenBank
Match: gi|1210521580|dbj|GAX19570.1| (RING-box protein 1 [Fistulifera solaris]) HSP 1 Score: 195.667 bits (496), Expect = 2.631e-62 Identity = 95/130 (73.08%), Postives = 102/130 (78.46%), Query Frame = 0 Query: 11 MDEDRPVPHGGGAEEGSGLGGSTSGSTSGAAAPRFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 140 M E VP +E+ L S +APRFEIKKWNAV MWSWDICADTCAICRN+LNEPSIEYQANPSP N+NGLSIAFG C HVFHLDCIQRWLK RSVCPLCNKEW+F+KIERIPGY LGI Sbjct: 1 MAEVADVPMEDASEQQQVL--------SKPSAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNKEWDFAKIERIPGYGQLGI 122
BLAST of EWM20825.1 vs. NCBI_GenBank
Match: gi|1210531713|dbj|GAX09680.1| (RING-box protein 1 [Fistulifera solaris]) HSP 1 Score: 195.282 bits (495), Expect = 4.556e-62 Identity = 90/110 (81.82%), Postives = 95/110 (86.36%), Query Frame = 0 Query: 31 GSTSGSTSGAAAPRFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 140 S S +APRFEIKKWNAV MWSWDICADTCAICRN+LNEPSIEYQANPSP N+NGLSIAFG C HVFHLDCIQRWLK RSVCPLCNKEW+F+KIERIPGY LGI Sbjct: 12 ASEQQVLSKPSAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNKEWDFAKIERIPGYGQLGI 121
BLAST of EWM20825.1 vs. NCBI_GenBank
Match: gi|219125612|ref|XP_002183070.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405345|gb|EEC45288.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 194.512 bits (493), Expect = 1.354e-61 Identity = 92/129 (71.32%), Postives = 101/129 (78.29%), Query Frame = 0 Query: 16 PVPHGGGAEEGSGLGGSTSGST----SGAAAPRFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 140 PV E + G+ S + +APRFEIKKWNAV MWSWDICADTCAICRN+LNEPSIEYQANPSP N+NGLSIAFG C HVFHLDCIQRWLK RSVCPLCNKEW+F+KIERIPGY LG+ Sbjct: 6 PVEDSKDVEMEETVEGADSEEVVKPKASGSAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNKEWDFAKIERIPGYGQLGL 134
BLAST of EWM20825.1 vs. NCBI_GenBank
Match: gi|1072234727|gb|OEU19456.1| (ring-box protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 193.741 bits (491), Expect = 1.729e-61 Identity = 88/101 (87.13%), Postives = 93/101 (92.08%), Query Frame = 0 Query: 39 GAAAPRFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALG 139 G+AAPRFEIKKWNAV MWSWDICADTCAICRN+LNEPSIEYQANPSP N+NGLSIAFG C HVFHLDCIQRWLK RSVCPLCNKEW+F+KIERIPGY L Sbjct: 26 GSAAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLKTRSVCPLCNKEWDFAKIERIPGYGQLA 126
BLAST of EWM20825.1 vs. NCBI_GenBank
Match: gi|224002296|ref|XP_002290820.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974242|gb|EED92572.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 186.808 bits (473), Expect = 8.775e-59 Identity = 84/96 (87.50%), Postives = 89/96 (92.71%), Query Frame = 0 Query: 40 AAAPRFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGY 135 APRFEIKKWNAV MWSWDICADTCAICRN+LNEPSIEYQANPSP N+NGLSIAFG C HVFHLDCIQRWL+ RSVCPLCNKEW+F+KIERIPGY Sbjct: 23 TTAPRFEIKKWNAVAMWSWDICADTCAICRNSLNEPSIEYQANPSPTNDNGLSIAFGNCGHVFHLDCIQRWLRTRSVCPLCNKEWDFAKIERIPGY 118
BLAST of EWM20825.1 vs. NCBI_GenBank
Match: gi|553182429|ref|XP_005853728.1| (RING-box protein 1 [Nannochloropsis gaditana CCMP526] >gi|422295331|gb|EKU22630.1| RING-box protein 1 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 184.111 bits (466), Expect = 3.448e-58 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 Query: 55 MWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 140 MWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI Sbjct: 1 MWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALGI 86
BLAST of EWM20825.1 vs. NCBI_GenBank
Match: gi|676383527|ref|XP_009035042.1| (hypothetical protein AURANDRAFT_22764, partial [Aureococcus anophagefferens] >gi|323454355|gb|EGB10225.1| hypothetical protein AURANDRAFT_22764, partial [Aureococcus anophagefferens]) HSP 1 Score: 178.718 bits (452), Expect = 9.443e-56 Identity = 84/102 (82.35%), Postives = 89/102 (87.25%), Query Frame = 0 Query: 44 RFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSH------VFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGYNALG 139 R ++WNAV MWSWDICADTCAICRN+LNEPSIEYQANPSPNNENGLSIAFGCC H VFHLDCIQRWLK RSVCPLCNKEWEF+KIERIPGY +LG Sbjct: 2 RTATRRWNAVCMWSWDICADTCAICRNSLNEPSIEYQANPSPNNENGLSIAFGCCGHARPPAQVFHLDCIQRWLKTRSVCPLCNKEWEFAKIERIPGYGSLG 103
BLAST of EWM20825.1 vs. NCBI_GenBank
Match: gi|397638657|gb|EJK73162.1| (hypothetical protein THAOC_05231, partial [Thalassiosira oceanica]) HSP 1 Score: 177.563 bits (449), Expect = 1.923e-54 Identity = 78/92 (84.78%), Postives = 85/92 (92.39%), Query Frame = 0 Query: 44 RFEIKKWNAVTMWSWDICADTCAICRNNLNEPSIEYQANPSPNNENGLSIAFGCCSHVFHLDCIQRWLKARSVCPLCNKEWEFSKIERIPGY 135 RFEIKKWNAV MWSWDICA+ CAICRN+LNEPSIEYQANPS N+NGLSIAFG C HVFHLDCIQRWL+ RSVCPLCNKEW+F+KIERIPG+ Sbjct: 70 RFEIKKWNAVAMWSWDICAEHCAICRNSLNEPSIEYQANPSQTNDNGLSIAFGTCGHVFHLDCIQRWLRTRSVCPLCNKEWDFAKIERIPGF 161 The following BLAST results are available for this feature:
BLAST of EWM20825.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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