rna9878, rna9878 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9878
Unique Name	rna9878
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2801
Alignment location	KK037257.1:35316..37742 -

Link to JBrowse

Properties


Property Name	Value
Product	Zn(2)-C6 fungal-type DNA-binding domain protein
Orig transcript id	gnl\|cribi\|Naga_100314g3.5185.mrna
Orig protein id	gnl\|cribi\|Naga_100314g3.5185
Gbkey	mRNA
Note	encoded by transcript variant 3; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037257.1	supercontig	KK037257.1:35316..37742 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100314g3	gene9587	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20831.1	cds9847	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9878	rna9878-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037257.1:35316..37742-
coding sequence from alignment at KK037257.1:35316..37742-

mRNA sequence

>rna9878 ID=rna9878|Name=rna9878|organism=Nannochloropsis gaditana|type=mRNA|length=2801bp
GTTCTAGCTATGAGGCTGCTATTCCCGGGCTCACATATTGGGATTGCCGA
CGGCATCGCCTTTTGCACACCGTCGTATGAAGGCATGGTGTATCCTTCTC
ATTTCTTGCTTATGGGTGATGTGTGCGAGCTTGTAAAGTTCAATGGGCCT
TGCTTACTCTTTAGGATCACTTTGCGTCAGGTGTGCAGACCTCCGAGTTG
ATGGCTTTTCACGATAAAAACAATTACCGAGGGTGAAGCCATTTGTGCAA
TCTTTCTTCTGAAAGCCATCAGCACTACGACACTGGACAACAACACTGTG
AGCGTTTCTGACCACATGCGGATTAGTTTAGAAATAAGGCGGGCAATGAA
GCACACTAGCATTGAAAGGCTGTGGTAAGCATGGACAATTTGGAATACAG
GAGAGTAGTTCGAGTGGCGCACTTGGGAGCCGACAACAAGAAACAAGAAG
AGGTTTGCGAAGTAAGCGTGGTGGTGAGACCGTTACTATCATCGAATCTA
ACTGAACAACAACTGCTCCAAATCGTCAAAACTGTCGTATCCTCGATCAA
TTCGGGTTCCGAGCGACCAGCAACGGCGGAAGGTAGCTGTGGCAGTGCAA
CCTCCCCCTCAAGCACTGGCAATGAAGTGACGTTGTCGAACCCAACTCAG
GTGCCATGGACGCGGCCTTTCTCGGCAAGGCCGGTCGAGATAAATAATGT
TGGCAGCCATGTTCACGTAGACACGTTGCTAGTTATAGAGGATGAGCAAA
GGGCAAATGCAAATCAGGGGCTTGATGCTACCGAAGACATCATCCATGCT
GATCGACCCCGCAAGGAGAATACTTTGGAGAGTAATCGCCTTGGCCGTGA
CAGAGAGGTGTGCGTCCAAGAGAAGGAATTTCAGGATGACGAGCTGCTTT
CATGTCAGAGGCTCGAAGGCTCGACATCAATGCTGAACATTGGTTCAATG
GGGAAGCTACGTTCGCATGCGGGTATTACTCTGTCAAGAAGCAGCGCGGA
CGCGGGTGGCGAGGGGCTTCGTCGTGGGCGAAAAGGTGCGTCTTTGAGCA
CGCTCAAATCTTGCGAATTTTGCTCGCTTAAAAAAATGAAATGCGACGCA
AAACTACCCTGCAAAGCTTGTCTTACGCGGAATCAAATTTGCGAGTACCG
ACAGCGGAAGAGTCGTCTCCCTCGAGGCAAGAGGTCTTTCTCCCCTCCTA
AGATTATCAAGCGGGCAGGTCCTCCCTATGTGCCGGCCGCGGTGGCTTCC
AAGCCGGTCGTTTCCTCTCCTACTATCGGCTTACTTCCTCAATCGACATA
TAGCAGAGGAGGATCGACAAGCGCGCTTGCCATAGGACTCAGGGAAAGAC
GCGAAGGTGGCTTGGCCGCGAGCGTGCAAGAATTTGCAAGCCGCGAGCAA
TTCGCAGAAACAGATCCCAGGGCGTATTTCCATAGGAGAGTACTCGACAC
TGAGGTCATGAATAGAGAGGATCATGCCGTCCTGACAAATGACAGTGCTC
CTGGGGCCTCCCTCCCTTTGCGAGATGGAACGTCGGTGCCAAGAAGTGAC
GTCATCAGGACAAGGCTTTCTGGTAAGGCAGCTATTCACCCATCGCCAAG
AACACGGCAGCAGGCGAGAGGGCAAACAGAGAATGTCAGTGGGCATCGCG
ACGTAAACGAGGAGAGTATGGAACTATCTCTTCCACGCTACCGGGGGGGG
CACCCTTCTCTCTCTCACTCCCATTACTCCCATCAATCACTTCCTGCGGA
GGCCATAGACATGGCGGATCGCGAGGTTGCTGCGTTGACAGAGATGACAC
CCACCCTGATGTGGAGCGTAAAGGATGAAAATCCCCCTATCGTATCAGGC
CACATGACCGGGGCTCCAGAGGAGGACAGCGGCGGTGGAAGGGCACGGCC
TAGCCCGCAACGCACCATCGGTGTGGAGGACGGCCCCCCTACATCCCACC
ACACATTTTCTAGCATTGCAGCTTTCGAACCGGTAGATAGATCGGCAATG
ACTCCGAGGACTCGTCAGAAGGAGCATCAGCGCTCTACCAAGCACGAGCG
GGAGGAATCAGTCGAAAGAGACGACATTTGGGAGGGTGAACAATACCAGG
ACCAGACGAGACATTTGCAACAGTCGAACGATGAATCTGAGCGTTCGGAT
CACCAGAGAGGTGTACAATGGCAGTTTTCAAATCCTAGCTCAGCCGGCTC
CACCTCCCCTTCCTCTTTCATTCTGTCATTCCCGACTACTCAAGATATGA
ATGAAAATGTGAACACATTTCGAGCACGGGAATTGATCACAGACGCAAAT
GATAACGGCCTGCGAGTGGAAATCTCTTTTCTTGATCCTTGGAGAAGACT
GGATTCCATGAACGCGTCAAATCAAGGCTGAGGTCGTGGTATCTCAAATG
GAGTGCGGACGGTCGGATTTGTTGGAATTAGCGGAAGTCGGAGCTCTTAC
GACAATGAAAAGAAAGTAAGGAGAGTAAGATGTATTGCAATTCCGGCACA
CCATCTCGTTGTTTAACTCTTTGAAACGCGGAATATATCTAGATATCAAT
TACACGTGTCAAAAGACGCTTGCAAACTGTATTGGAGGAAGATACCCTGC
TCTGTCTATTTCACCTTTTTGTGTGCCAAAAAGTCATCCCTTCGCATCGT
AAAAAGCGATTTATAAACCAAACTAAAATAAGAACGGATACAGGAAGGTG
CAAGACAAAATTAAATACGGCACTTTTGATACAATTCAGAATATCATTTT
TGCAAGTCAAAGGACGCACGCGCCTTTTTCAATTATCGATTAACTCGGCC
C

protein sequence of rna9878

>rna9878-protein ID=rna9878-protein|Name=rna9878|organism=Nannochloropsis gaditana|type=polypeptide|length=604bp
MLLAQYSPNSATSPSSTGNEVTLSNPTQVPWTRPFSARPVEINNVGSHVH
VDTLLVIEDEQRANANQGLDATEDIIHADRPRKENTLESNRLGRDREVCV
QEKEFQDDELLSCQRLEGSTSMLNIGSMGKLRSHAGITLSRSSADAGGEG
LRRGRKGASLSTLKSCEFCSLKKMKCDAKLPCKACLTRNQICEYRQRKSR
LPRGKRSFSPPKIIKRAGPPYVPAAVASKPVVSSPTIGLLPQSTYSRGGS
TSALAIGLRERREGGLAASVQEFASREQFAETDPRAYFHRRVLDTEVMNR
EDHAVLTNDSAPGASLPLRDGTSVPRSDVIRTRLSGKAAIHPSPRTRQQA
RGQTENVSGHRDVNEESMELSLPRYRGGHPSLSHSHYSHQSLPAEAIDMA
DREVAALTEMTPTLMWSVKDENPPIVSGHMTGAPEEDSGGGRARPSPQRT
IGVEDGPPTSHHTFSSIAAFEPVDRSAMTPRTRQKEHQRSTKHEREESVE
RDDIWEGEQYQDQTRHLQQSNDESERSDHQRGVQWQFSNPSSAGSTSPSS
FILSFPTTQDMNENVNTFRARELITDANDNGLRVEISFLDPWRRLDSMNA
SNQG

mRNA from alignment at KK037257.1:35316..37742-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9878 ID=rna9878|Name=rna9878|organism=Nannochloropsis gaditana|type=mRNA|length=2427bp|location=Sequence derived from alignment at KK037257.1:35316..37742- (Nannochloropsis gaditana)
GCATTGAGAGCGAACCATGCACGTATATTGCATGTCAGCTTCCACGTGAC
CTGTCTCACCTTATAAACGCTCAGAAAGGCTACAATGGTTTTAGGGGAAG
GGATGAGGATAGAAGTAGACTATGTTTTTGGCATTACAAATCGCAAGATT
CAAGATTTTCCCGCACTATGACGCAGCAAATTAGGCTAGTTCATGCTTCT
TGCTCAATATTCACCAAACAGTGCAACCTCCCCCTCAAGCACTGGCAATG
AAGTGACGTTGTCGAACCCAACTCAGGTGCCATGGACGCGGCCTTTCTCG
GCAAGGCCGGTCGAGATAAATAATGTTGGCAGCCATGTTCACGTAGACAC
GTTGCTAGTTATAGAGGATGAGCAAAGGGCAAATGCAAATCAGGGGCTTG
ATGCTACCGAAGACATCATCCATGCTGATCGACCCCGCAAGGAGAATACT
TTGGAGAGTAATCGCCTTGGCCGTGACAGAGAGGTGTGCGTCCAAGAGAA
GGAATTTCAGGATGACGAGCTGCTTTCATGTCAGAGGCTCGAAGGCTCGA
CATCAATGCTGAACATTGGTTCAATGGGGAAGCTACGTTCGCATGCGGGT
ATTACTCTGTCAAGAAGCAGCGCGGACGCGGGTGGCGAGGGGCTTCGTCG
TGGGCGAAAAGGTGCGTCTTTGAGCACGCTCAAATCTTGCGAATTTTGCT
CGCTTAAAAAAATGAAATGCGACGCAAAACTACCCTGCAAAGCTTGTCTT
ACGCGGAATCAAATTTGCGAGTACCGACAGCGGAAGAGTCGTCTCCCTCG
AGGCAAGAGGTCTTTCTCCCCTCCTAAGATTATCAAGCGGGCAGGTCCTC
CCTATGTGCCGGCCGCGGTGGCTTCCAAGCCGGTCGTTTCCTCTCCTACT
ATCGGCTTACTTCCTCAATCGACATATAGCAGAGGAGGATCGACAAGCGC
GCTTGCCATAGGACTCAGGGAAAGACGCGAAGGTGGCTTGGCCGCGAGCG
TGCAAGAATTTGCAAGCCGCGAGCAATTCGCAGAAACAGATCCCAGGGCG
TATTTCCATAGGAGAGTACTCGACACTGAGGTCATGAATAGAGAGGATCA
TGCCGTCCTGACAAATGACAGTGCTCCTGGGGCCTCCCTCCCTTTGCGAG
ATGGAACGTCGGTGCCAAGAAGTGACGTCATCAGGACAAGGCTTTCTGGT
AAGGCAGCTATTCACCCATCGCCAAGAACACGGCAGCAGGCGAGAGGGCA
AACAGAGAATGTCAGTGGGCATCGCGACGTAAACGAGGAGAGTATGGAAC
TATCTCTTCCACGCTACCGGGGGGGGCACCCTTCTCTCTCTCACTCCCAT
TACTCCCATCAATCACTTCCTGCGGAGGCCATAGACATGGCGGATCGCGA
GGTTGCTGCGTTGACAGAGATGACACCCACCCTGATGTGGAGCGTAAAGG
ATGAAAATCCCCCTATCGTATCAGGCCACATGACCGGGGCTCCAGAGGAG
GACAGCGGCGGTGGAAGGGCACGGCCTAGCCCGCAACGCACCATCGGTGT
GGAGGACGGCCCCCCTACATCCCACCACACATTTTCTAGCATTGCAGCTT
TCGAACCGGTAGATAGATCGGCAATGACTCCGAGGACTCGTCAGAAGGAG
CATCAGCGCTCTACCAAGCACGAGCGGGAGGAATCAGTCGAAAGAGACGA
CATTTGGGAGGGTGAACAATACCAGGACCAGACGAGACATTTGCAACAGT
CGAACGATGAATCTGAGCGTTCGGATCACCAGAGAGGTGTACAATGGCAG
TTTTCAAATCCTAGCTCAGCCGGCTCCACCTCCCCTTCCTCTTTCATTCT
GTCATTCCCGACTACTCAAGATATGAATGAAAATGTGAACACATTTCGAG
CACGGGAATTGATCACAGACGCAAATGATAACGGCCTGCGAGTGGAAATC
TCTTTTCTTGATCCTTGGAGAAGACTGGATTCCATGAACGCGTCAAATCA
AGGCTGAGGTCGTGGTATCTCAAATGGAGTGCGGACGGTCGGATTTGTTG
GAATTAGCGGAAGTCGGAGCTCTTACGACAATGAAAAGAAAGTAAGGAGA
GTAAGATGTATTGCAATTCCGGCACACCATCTCGTTGTTTAACTCTTTGA
AACGCGGAATATATCTAGATATCAATTACACGTGTCAAAAGACGCTTGCA
AACTGTATTGGAGGAAGATACCCTGCTCTGTCTATTTCACCTTTTTGTGT
GCCAAAAAGTCATCCCTTCGCATCGTAAAAAGCGATTTATAAACCAAACT
AAAATAAGAACGGATACAGGAAGGTGCAAGACAAAATTAAATACGGCACT
TTTGATACAATTCAGAATATCATTTTTGCAAGTCAAAGGACGCACGCGCC
TTTTTCAATTATCGATTAACTCGGCCC

Coding sequence (CDS) from alignment at KK037257.1:35316..37742-

>rna9878 ID=rna9878|Name=rna9878|organism=Nannochloropsis gaditana|type=CDS|length=1815bp|location=Sequence derived from alignment at KK037257.1:35316..37742- (Nannochloropsis gaditana)
ATGCTTCTTGCTCAATATTCACCAAACAGTGCAACCTCCCCCTCAAGCAC
TGGCAATGAAGTGACGTTGTCGAACCCAACTCAGGTGCCATGGACGCGGC
CTTTCTCGGCAAGGCCGGTCGAGATAAATAATGTTGGCAGCCATGTTCAC
GTAGACACGTTGCTAGTTATAGAGGATGAGCAAAGGGCAAATGCAAATCA
GGGGCTTGATGCTACCGAAGACATCATCCATGCTGATCGACCCCGCAAGG
AGAATACTTTGGAGAGTAATCGCCTTGGCCGTGACAGAGAGGTGTGCGTC
CAAGAGAAGGAATTTCAGGATGACGAGCTGCTTTCATGTCAGAGGCTCGA
AGGCTCGACATCAATGCTGAACATTGGTTCAATGGGGAAGCTACGTTCGC
ATGCGGGTATTACTCTGTCAAGAAGCAGCGCGGACGCGGGTGGCGAGGGG
CTTCGTCGTGGGCGAAAAGGTGCGTCTTTGAGCACGCTCAAATCTTGCGA
ATTTTGCTCGCTTAAAAAAATGAAATGCGACGCAAAACTACCCTGCAAAG
CTTGTCTTACGCGGAATCAAATTTGCGAGTACCGACAGCGGAAGAGTCGT
CTCCCTCGAGGCAAGAGGTCTTTCTCCCCTCCTAAGATTATCAAGCGGGC
AGGTCCTCCCTATGTGCCGGCCGCGGTGGCTTCCAAGCCGGTCGTTTCCT
CTCCTACTATCGGCTTACTTCCTCAATCGACATATAGCAGAGGAGGATCG
ACAAGCGCGCTTGCCATAGGACTCAGGGAAAGACGCGAAGGTGGCTTGGC
CGCGAGCGTGCAAGAATTTGCAAGCCGCGAGCAATTCGCAGAAACAGATC
CCAGGGCGTATTTCCATAGGAGAGTACTCGACACTGAGGTCATGAATAGA
GAGGATCATGCCGTCCTGACAAATGACAGTGCTCCTGGGGCCTCCCTCCC
TTTGCGAGATGGAACGTCGGTGCCAAGAAGTGACGTCATCAGGACAAGGC
TTTCTGGTAAGGCAGCTATTCACCCATCGCCAAGAACACGGCAGCAGGCG
AGAGGGCAAACAGAGAATGTCAGTGGGCATCGCGACGTAAACGAGGAGAG
TATGGAACTATCTCTTCCACGCTACCGGGGGGGGCACCCTTCTCTCTCTC
ACTCCCATTACTCCCATCAATCACTTCCTGCGGAGGCCATAGACATGGCG
GATCGCGAGGTTGCTGCGTTGACAGAGATGACACCCACCCTGATGTGGAG
CGTAAAGGATGAAAATCCCCCTATCGTATCAGGCCACATGACCGGGGCTC
CAGAGGAGGACAGCGGCGGTGGAAGGGCACGGCCTAGCCCGCAACGCACC
ATCGGTGTGGAGGACGGCCCCCCTACATCCCACCACACATTTTCTAGCAT
TGCAGCTTTCGAACCGGTAGATAGATCGGCAATGACTCCGAGGACTCGTC
AGAAGGAGCATCAGCGCTCTACCAAGCACGAGCGGGAGGAATCAGTCGAA
AGAGACGACATTTGGGAGGGTGAACAATACCAGGACCAGACGAGACATTT
GCAACAGTCGAACGATGAATCTGAGCGTTCGGATCACCAGAGAGGTGTAC
AATGGCAGTTTTCAAATCCTAGCTCAGCCGGCTCCACCTCCCCTTCCTCT
TTCATTCTGTCATTCCCGACTACTCAAGATATGAATGAAAATGTGAACAC
ATTTCGAGCACGGGAATTGATCACAGACGCAAATGATAACGGCCTGCGAG
TGGAAATCTCTTTTCTTGATCCTTGGAGAAGACTGGATTCCATGAACGCG
TCAAATCAAGGCTGA

Synonyms

Publications