EWM20828.1, cds9842 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20828.1 vs. NCBI_GenBank
Match: gi|585100752|gb|EWM20828.1| (ABC transporter, ATPase, putative [Nannochloropsis gaditana]) HSP 1 Score: 825.469 bits (2131), Expect = 0.000e+0 Identity = 400/400 (100.00%), Postives = 400/400 (100.00%), Query Frame = 0 Query: 1 MQSTHFSSLPCNQRISHHSHSINASFITRMQSTHSSSLPFDQYIFHHNHSINAFLITPIQSTHLSSLPFNQRIPHHSHSTNVSQPAPCVSLCPISPPPPGLPLAPPDIRPQVGAQVLLMDEDTCATNFMIRDLRMQLLVSKDKEPITPFLAKVQALYTQHGISSLLVIGGAGDYFEVADTVIMMDNYTPLDKTVAAKAIADQYSSSAGTSFFAPHFGTLSRRLPVPASLRTEGKVVARGKDKLQYGEEDVDLSGVEQLVEKRSFAVIRGVTCKCGKAKKEMDVDGRDSQMKVVSRVQDVNHLEPIARFVLPFQPLLHSSQSFYPSYGIWPRVFMGMDFIEACLTSSLACCPDICGLVSIASIVPLSSSYLGASAGSDTIKRKMSKVRRSRAIRMLQESRR 400 MQSTHFSSLPCNQRISHHSHSINASFITRMQSTHSSSLPFDQYIFHHNHSINAFLITPIQSTHLSSLPFNQRIPHHSHSTNVSQPAPCVSLCPISPPPPGLPLAPPDIRPQVGAQVLLMDEDTCATNFMIRDLRMQLLVSKDKEPITPFLAKVQALYTQHGISSLLVIGGAGDYFEVADTVIMMDNYTPLDKTVAAKAIADQYSSSAGTSFFAPHFGTLSRRLPVPASLRTEGKVVARGKDKLQYGEEDVDLSGVEQLVEKRSFAVIRGVTCKCGKAKKEMDVDGRDSQMKVVSRVQDVNHLEPIARFVLPFQPLLHSSQSFYPSYGIWPRVFMGMDFIEACLTSSLACCPDICGLVSIASIVPLSSSYLGASAGSDTIKRKMSKVRRSRAIRMLQESRR Sbjct: 1 MQSTHFSSLPCNQRISHHSHSINASFITRMQSTHSSSLPFDQYIFHHNHSINAFLITPIQSTHLSSLPFNQRIPHHSHSTNVSQPAPCVSLCPISPPPPGLPLAPPDIRPQVGAQVLLMDEDTCATNFMIRDLRMQLLVSKDKEPITPFLAKVQALYTQHGISSLLVIGGAGDYFEVADTVIMMDNYTPLDKTVAAKAIADQYSSSAGTSFFAPHFGTLSRRLPVPASLRTEGKVVARGKDKLQYGEEDVDLSGVEQLVEKRSFAVIRGVTCKCGKAKKEMDVDGRDSQMKVVSRVQDVNHLEPIARFVLPFQPLLHSSQSFYPSYGIWPRVFMGMDFIEACLTSSLACCPDICGLVSIASIVPLSSSYLGASAGSDTIKRKMSKVRRSRAIRMLQESRR 400
BLAST of EWM20828.1 vs. NCBI_GenBank
Match: gi|585100751|gb|EWM20827.1| (ABC transporter, ATPase, putative [Nannochloropsis gaditana]) HSP 1 Score: 597.045 bits (1538), Expect = 0.000e+0 Identity = 289/290 (99.66%), Postives = 290/290 (100.00%), Query Frame = 0 Query: 111 QVGAQVLLMDEDTCATNFMIRDLRMQLLVSKDKEPITPFLAKVQALYTQHGISSLLVIGGAGDYFEVADTVIMMDNYTPLDKTVAAKAIADQYSSSAGTSFFAPHFGTLSRRLPVPASLRTEGKVVARGKDKLQYGEEDVDLSGVEQLVEKRSFAVIRGVTCKCGKAKKEMDVDGRDSQMKVVSRVQDVNHLEPIARFVLPFQPLLHSSQSFYPSYGIWPRVFMGMDFIEACLTSSLACCPDICGLVSIASIVPLSSSYLGASAGSDTIKRKMSKVRRSRAIRMLQESRR 400 +VGAQVLLMDEDTCATNFMIRDLRMQLLVSKDKEPITPFLAKVQALYTQHGISSLLVIGGAGDYFEVADTVIMMDNYTPLDKTVAAKAIADQYSSSAGTSFFAPHFGTLSRRLPVPASLRTEGKVVARGKDKLQYGEEDVDLSGVEQLVEKRSFAVIRGVTCKCGKAKKEMDVDGRDSQMKVVSRVQDVNHLEPIARFVLPFQPLLHSSQSFYPSYGIWPRVFMGMDFIEACLTSSLACCPDICGLVSIASIVPLSSSYLGASAGSDTIKRKMSKVRRSRAIRMLQESRR Sbjct: 128 EVGAQVLLMDEDTCATNFMIRDLRMQLLVSKDKEPITPFLAKVQALYTQHGISSLLVIGGAGDYFEVADTVIMMDNYTPLDKTVAAKAIADQYSSSAGTSFFAPHFGTLSRRLPVPASLRTEGKVVARGKDKLQYGEEDVDLSGVEQLVEKRSFAVIRGVTCKCGKAKKEMDVDGRDSQMKVVSRVQDVNHLEPIARFVLPFQPLLHSSQSFYPSYGIWPRVFMGMDFIEACLTSSLACCPDICGLVSIASIVPLSSSYLGASAGSDTIKRKMSKVRRSRAIRMLQESRR 417
BLAST of EWM20828.1 vs. NCBI_GenBank
Match: gi|695405057|ref|XP_009523698.1| (hypothetical protein PHYSODRAFT_259448, partial [Phytophthora sojae] >gi|348681165|gb|EGZ20981.1| hypothetical protein PHYSODRAFT_259448, partial [Phytophthora sojae]) HSP 1 Score: 189.119 bits (479), Expect = 3.214e-51 Identity = 108/225 (48.00%), Postives = 133/225 (59.11%), Query Frame = 0 Query: 61 STHLSSLPFNQ---RIPHHSHSTNVSQPAPCVSLCPISPPPPGLPLAPPDIRPQVGAQVLLMDEDTCATNFMIRDLRMQLLVSKDKEPITPFLAKVQALYTQHGISSLLVIGGAGDYFEVADTVIMMDNYTPLDKTVAAKAIADQYSSSAGTSFFAPHFGTLSRRLPVPASLRTEGKVVARGKDKLQYGEEDVDLSGVEQLVEKRSFAVIRGVTCKCGKAKKEMD 282 S + +LPF Q R S + SQ A V +VGA LL+DEDTCATNFMIRD +MQ LV+KDKEPITPF++KV+ALYTQ G+SS+LVIGGAGDYF VAD VIMMD+Y P D TV AK IA ++ + FG R+P+ GKVV+RG K+QYGE D+DL+ VEQLVE +R + KA+ MD Sbjct: 318 SAFIDNLPFKQDTTRFSTADASGSTSQAANIVEAL------------------EVGATTLLIDEDTCATNFMIRDWKMQQLVAKDKEPITPFISKVRALYTQRGVSSVLVIGGAGDYFSVADQVIMMDSYEPRDVTVEAKKIASEHVEIRQDA----EFGGFKPRIPLSRGFEVNGKVVSRGLGKIQYGEVDLDLAAVEQLVEPSQ---VRTIADAIQKARSFMD 517
BLAST of EWM20828.1 vs. NCBI_GenBank
Match: gi|970661156|gb|KUF98647.1| (Calreticulin [Phytophthora nicotianae]) HSP 1 Score: 186.808 bits (473), Expect = 6.485e-51 Identity = 102/203 (50.25%), Postives = 123/203 (60.59%), Query Frame = 0 Query: 61 STHLSSLPFNQ---RIPHHSHSTNVSQPAPCVSLCPISPPPPGLPLAPPDIRPQVGAQVLLMDEDTCATNFMIRDLRMQLLVSKDKEPITPFLAKVQALYTQHGISSLLVIGGAGDYFEVADTVIMMDNYTPLDKTVAAKAIADQYSSSAGTSFFAPHFGTLSRRLPVPASLRTEGKVVARGKDKLQYGEEDVDLSGVEQLVE 260 S + +LPF Q R S + SQ A + +VGA LL+DEDTCATNFMIRD +MQ LV+KDKEPITPF++KVQALY Q G+SS+LVIGGAGDYF VAD VIMMD+Y P D T AK IA ++ G FG R+P+ GKVV+RG K+QYGE D+DLS VEQ+VE Sbjct: 209 SAFIDNLPFKQDTTRFSTADASGSTSQAANIIEAL------------------EVGATTLLIDEDTCATNFMIRDWKMQQLVAKDKEPITPFISKVQALYKQRGVSSVLVIGGAGDYFSVADHVIMMDSYEPRDVTTEAKKIASEH----GEIRQDAEFGEFKSRIPLGRGFEVNGKVVSRGLGKIQYGEVDLDLSAVEQIVE 389
BLAST of EWM20828.1 vs. NCBI_GenBank
Match: gi|1214694001|gb|OWZ08166.1| (hypothetical protein PHMEG_00019335 [Phytophthora megakarya]) HSP 1 Score: 189.119 bits (479), Expect = 1.802e-50 Identity = 108/225 (48.00%), Postives = 133/225 (59.11%), Query Frame = 0 Query: 61 STHLSSLPFNQ---RIPHHSHSTNVSQPAPCVSLCPISPPPPGLPLAPPDIRPQVGAQVLLMDEDTCATNFMIRDLRMQLLVSKDKEPITPFLAKVQALYTQHGISSLLVIGGAGDYFEVADTVIMMDNYTPLDKTVAAKAIADQYSSSAGTSFFAPHFGTLSRRLPVPASLRTEGKVVARGKDKLQYGEEDVDLSGVEQLVEKRSFAVIRGVTCKCGKAKKEMD 282 S + +LPF Q R S + SQ A V +VGA LL+DEDTCATNFMIRD +MQ LV+KDKEPITPF++KV+ALYTQ G+SS+LVIGGAGDYF VAD VIMMD+Y P D T AK IA ++ S FG R+P+ GKVV+RG K+QYGE D+DLS VEQ+VE + +R + KA+ MD Sbjct: 366 SAFIDNLPFKQDTTRFSTADASGSTSQAANIVEAL------------------EVGATTLLIDEDTCATNFMIRDWKMQQLVAKDKEPITPFISKVRALYTQRGVSSVLVIGGAGDYFSVADHVIMMDSYEPRDVTTEAKKIASEHGEIRQDS----EFGGFKARIPLSRGFEVNGKVVSRGLVKIQYGEVDLDLSAVEQIVEP---SQVRTIADAIQKARSFMD 565
BLAST of EWM20828.1 vs. NCBI_GenBank
Match: gi|953491712|emb|CEG45721.1| (P-loop containing nucleoside triphosphate hydrolase [Plasmopara halstedii]) HSP 1 Score: 188.348 bits (477), Expect = 1.912e-50 Identity = 98/187 (52.41%), Postives = 129/187 (68.98%), Query Frame = 0 Query: 111 QVGAQVLLMDEDTCATNFMIRDLRMQLLVSKDKEPITPFLAKVQALYTQHGISSLLVIGGAGDYFEVADTVIMMDNYTPLDKTVAAKAIADQYSSSAGTSFFAPHFGTLSRRLPVPASLRTEGKVVARGKDKLQYGEEDVDLSGVEQLVEKRSFAVIRGVTCKCGKAKKEMDVDGRDSQMKVVSRVQ 297 +VGA LL+DEDTCATNFMIRD +MQ LV+K+KEPITPF++KVQAL+ G+SS+LVIGGAGDYF VAD VIMMD Y P + T AK IA +Y + FG R+P+ +GKVVARG DK+QYGE D+DLS VEQ+VE + +R + KA+ M DG+ + M+V+++++ Sbjct: 376 EVGATTLLIDEDTCATNFMIRDWKMQQLVAKEKEPITPFISKVQALFKGLGVSSILVIGGAGDYFSVADHVIMMDAYEPRNVTNEAKTIASKYGEISQDVV----FGDFKSRIPLSQGFEAKGKVVARGLDKIQYGEVDLDLSAVEQIVEP---SQVRTIADALQKAQSYM--DGKRTLMEVLTKLE 553
BLAST of EWM20828.1 vs. NCBI_GenBank
Match: gi|301121294|ref|XP_002908374.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262103405|gb|EEY61457.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 188.348 bits (477), Expect = 2.268e-50 Identity = 109/240 (45.42%), Postives = 144/240 (60.00%), Query Frame = 0 Query: 61 STHLSSLPFNQ---RIPHHSHSTNVSQPAPCVSLCPISPPPPGLPLAPPDIRPQVGAQVLLMDEDTCATNFMIRDLRMQLLVSKDKEPITPFLAKVQALYTQHGISSLLVIGGAGDYFEVADTVIMMDNYTPLDKTVAAKAIADQYSSSAGTSFFAPHFGTLSRRLPVPASLRTEGKVVARGKDKLQYGEEDVDLSGVEQLVEKRSFAVIRGVTCKCGKAKKEMDVDGRDSQMKVVSRVQ 297 S + +LPF Q R S + SQ A V +VGA LL+DEDTCATNFMIRD +MQ LV+KDKEPITPF++KVQALY Q G+SS+LVIGGAGDYF VAD V+MMD+Y P D T AK IA+++ G FG + R+P+ GKVV+RG K+QYGE D+DLS VEQ+VE + +R + KA+ M DG+ + +V+++++ Sbjct: 350 SAFIDNLPFKQDTTRFSTADASGSTSQAANIVEAL------------------EVGATTLLVDEDTCATNFMIRDWKMQQLVAKDKEPITPFISKVQALYKQRGVSSVLVIGGAGDYFSVADHVVMMDSYEPRDVTAEAKKIANEH----GEIRQDAEFGGYTPRIPLSRGFEVNGKVVSRGLGKIQYGEVDLDLSAVEQIVEP---SQVRTIADAIQKARSFM--DGKRTLEEVLAKLE 562
BLAST of EWM20828.1 vs. NCBI_GenBank
Match: gi|675163719|ref|XP_008890744.1| (hypothetical protein PPTG_00921 [Phytophthora parasitica INRA-310] >gi|568110094|gb|ETN24701.1| hypothetical protein PPTG_00921 [Phytophthora parasitica INRA-310]) HSP 1 Score: 187.193 bits (474), Expect = 1.007e-49 Identity = 102/203 (50.25%), Postives = 123/203 (60.59%), Query Frame = 0 Query: 61 STHLSSLPFNQ---RIPHHSHSTNVSQPAPCVSLCPISPPPPGLPLAPPDIRPQVGAQVLLMDEDTCATNFMIRDLRMQLLVSKDKEPITPFLAKVQALYTQHGISSLLVIGGAGDYFEVADTVIMMDNYTPLDKTVAAKAIADQYSSSAGTSFFAPHFGTLSRRLPVPASLRTEGKVVARGKDKLQYGEEDVDLSGVEQLVE 260 S + +LPF Q R S + SQ A + +VGA LL+DEDTCATNFMIRD +MQ LV+KDKEPITPF++KVQALY Q G+SS+LVIGGAGDYF VAD VIMMD+Y P D T AK IA ++ G FG R+P+ GKVV+RG K+QYGE D+DLS VEQ+VE Sbjct: 371 SAFIDNLPFKQDTTRFSTADASGSTSQAANIIEAL------------------EVGATTLLIDEDTCATNFMIRDWKMQQLVAKDKEPITPFISKVQALYKQRGVSSVLVIGGAGDYFSVADHVIMMDSYEPRDVTTEAKKIASEH----GEIRQDAEFGEFKSRIPLGRGFEVNGKVVSRGLGKIQYGEVDLDLSAVEQIVE 551
BLAST of EWM20828.1 vs. NCBI_GenBank
Match: gi|970634709|gb|KUF79839.1| (hypothetical protein AM587_10014667 [Phytophthora nicotianae] >gi|970644553|gb|KUF85351.1| hypothetical protein AM587_10015174 [Phytophthora nicotianae]) HSP 1 Score: 186.808 bits (473), Expect = 1.018e-49 Identity = 102/203 (50.25%), Postives = 123/203 (60.59%), Query Frame = 0 Query: 61 STHLSSLPFNQ---RIPHHSHSTNVSQPAPCVSLCPISPPPPGLPLAPPDIRPQVGAQVLLMDEDTCATNFMIRDLRMQLLVSKDKEPITPFLAKVQALYTQHGISSLLVIGGAGDYFEVADTVIMMDNYTPLDKTVAAKAIADQYSSSAGTSFFAPHFGTLSRRLPVPASLRTEGKVVARGKDKLQYGEEDVDLSGVEQLVE 260 S + +LPF Q R S + SQ A + +VGA LL+DEDTCATNFMIRD +MQ LV+KDKEPITPF++KVQALY Q G+SS+LVIGGAGDYF VAD VIMMD+Y P D T AK IA ++ G FG R+P+ GKVV+RG K+QYGE D+DLS VEQ+VE Sbjct: 371 SAFIDNLPFKQDTTRFSTADASGSTSQAANIIEAL------------------EVGATTLLIDEDTCATNFMIRDWKMQQLVAKDKEPITPFISKVQALYKQRGVSSVLVIGGAGDYFSVADHVIMMDSYEPRDVTTEAKKIASEH----GEIRQDAEFGEFKSRIPLGRGFEVNGKVVSRGLGKIQYGEVDLDLSAVEQIVE 551
BLAST of EWM20828.1 vs. NCBI_GenBank
Match: gi|675163721|ref|XP_008890745.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|568110095|gb|ETN24702.1| hypothetical protein, variant [Phytophthora parasitica INRA-310]) HSP 1 Score: 186.808 bits (473), Expect = 1.158e-49 Identity = 102/203 (50.25%), Postives = 123/203 (60.59%), Query Frame = 0 Query: 61 STHLSSLPFNQ---RIPHHSHSTNVSQPAPCVSLCPISPPPPGLPLAPPDIRPQVGAQVLLMDEDTCATNFMIRDLRMQLLVSKDKEPITPFLAKVQALYTQHGISSLLVIGGAGDYFEVADTVIMMDNYTPLDKTVAAKAIADQYSSSAGTSFFAPHFGTLSRRLPVPASLRTEGKVVARGKDKLQYGEEDVDLSGVEQLVE 260 S + +LPF Q R S + SQ A + +VGA LL+DEDTCATNFMIRD +MQ LV+KDKEPITPF++KVQALY Q G+SS+LVIGGAGDYF VAD VIMMD+Y P D T AK IA ++ G FG R+P+ GKVV+RG K+QYGE D+DLS VEQ+VE Sbjct: 371 SAFIDNLPFKQDTTRFSTADASGSTSQAANIIEAL------------------EVGATTLLIDEDTCATNFMIRDWKMQQLVAKDKEPITPFISKVQALYKQRGVSSVLVIGGAGDYFSVADHVIMMDSYEPRDVTTEAKKIASEH----GEIRQDAEFGEFKSRIPLGRGFEVNGKVVSRGLGKIQYGEVDLDLSAVEQIVE 551 The following BLAST results are available for this feature:
BLAST of EWM20828.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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