rna9846, rna9846 (mRNA) Nannochloropsis gaditana

Overview
Namerna9846
Unique Namerna9846
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2366
Alignment locationKK037256.1:251250..252776 -

Link to JBrowse

Properties
Property NameValue
Productprotein of unknown function DUF23
Orig transcript idgnl|cribi|Naga_100164g10.9739.mrna
Orig protein idgnl|cribi|Naga_100164g10.9739
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:251250..252776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100164g10gene9559Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20859.1cds9815Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9846rna9846-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9846 ID=rna9846|Name=rna9846|organism=Nannochloropsis gaditana|type=mRNA|length=2366bp
TGAAGTATGCAACAAATGCTTCCAAAAAAGATTGACGAGGAATGTCCAAA
TTCTTCTTCATTTTTACGTATTCCTGTTCTCTTCTCCATTTATTCTTTCT
GCTCTCAAACCTACTAGGGATAGGACACATAGGGGCATCTCACACTCCCT
TGCCACAGCCTTGGAACCGTAACTACTAGCCGCAACAGATGAAGAGATGG
CATTAAAGCACTGGCTTAGAGCAATGTTGAGCTTTTCTGTCGCGTCATAT
GCCTGGGTTGTCTGGCATCATGTACCGTCCGAAGAGACAGCCTATCCAGT
CCCTCGATTTAGTGCACTTTCACAAACACCGGGCCCTGTGAACACTACTT
CCATAAGGATTATGGCTTTGAGGTCTGCGCCCACATTCATACATATTCCT
TAGACTGGAGGGACATCAATCGAAACAGAATTGGCCATCCACGGTATACA
TGTTGGAAGGTGCGCATTTTAAAGGAAGGAGGATGGAGGCCAGCGCACAT
ACAAAATTAAGCAAGGGCGTTGCAATGGGTGGCACTCATTACCACTTGAA
CACGTCAACAATAGCATCACTGTCGTGAGGGATCCAATGGATCGATTACT
TAGCGAATTTTGTCGGGAACGCGCAAGGGAGATATATCGAGCCGAGCTTT
CTTGTGAGGGACTATCGAGTTAGATTTTGGACATTTTATCGAATGAAGTG
ACGGACAACAACCACATATATGATTGTCACCTACTACCCCAGTGGGAATA
TGCAAAATGGGCTGATAGTATCGTCCCGTTTTGTGCATTAGGAACACCGC
ATGGAAATAAATTGCTAGCTGAGCACTTCGAAGTTGCGAACTTTACCCTG
CGGGAGGAGAATCACGTTCATATGCGTGATGGAGAGTGTAAAACTTTTAC
CAACTCTGTACAAAGGGCTTTTAACGTCACCAACTGTATTTCATCGACGG
CGTATGCCTTGTTCCAAGACATTTATCGGCTTGATTACAAGTATCTTGGG
AAACATTTCACGTGTGCATGAAGAACTGCACAACACAACAAAAAACGTTT
CTCTGGGTAACAGAATGACATCCATCTAACCGAAGCCTAGGCGCCTTTGT
CCCTCATTTATTGTAAGTCTTACTAACAGCTCTACTATTATTTCATGCCT
GCTGTCAGTTCGCAGGTATAAGGTACACCTTGGCATTGCGATGAGGGGCA
AGCAACATATTTAATGCACAAAATATTTCAACATCGACTGAACAAGGTAT
CAAAAATATGGTACGACATGACAAGAATAGCGTTTGCGAGGAGAGAACGC
TGAACAAGAATTTTGTTTCTGAAGATGCATAGGTTTTCAGGGCTTTTGTG
AGGACACCTTTTCATATATTGTACTTGTTTGTGTGGACACTTTTCCATAT
ATTCTACTCCTTCATCCTCCATACGATCTATTGGCGGAGACTTCGCGTTG
CTCCTGGCTTGCGAATTACACAGTGGGGACGAAAAATACTGTCGAAGGTT
TACCTCGGGAGATCCTTCATTGAGGGTTTTCGAATGGCACACATTTATCC
TTATATTGTATGGAAAGTCATGCCCCTCTACATAACCCACACACCCTCAA
GCTTGACATGCGCATTCTCAGCCTTCGTCTTTTCCGGTATTGCCTGGGGT
TATGCCTTCATCCTTCTTTGACTCCTTTCTTCCTCAAGTGTTCCTACATT
CGTCACCCACTTGTGCCACATCATCTCTACTTCTTACGGTCCTTTCCCCA
AATATACGGAAAGCCCTACCTATCCTGGGTTTGGGTGAATACCTACAATG
TCGACTGTACTGTTGAGGGCTTCAGGCTGGCGAGTGGGTTGTCATGCCTG
TACGGAGTGCTGCTAAGCAAAAAGCGCAGCGTAAAAACGTGCTAGAGGCT
CGATTGTTTGAACTGAGCATTGTGGGAGTTGCTAAGGGCAATTTCAGCCA
TAAGAGGAAAGGATGAGGGCCAAGAACGAGGCACGGAAGCCCATGTTCAC
CTGTGTCCATTGGGGAAATCCCATTCTTGCGTGTGTCATTCATGCCTTCC
GATTACGTTGCAGTGAAATAAAACTAGTCCATGTTGATGAAAATTGGTGC
CAGTCCAAGGCTTAACCGGCTCCTTTTTAGTGATCTACAGAGAAGTGTTT
GTATCCCAGATACTTGCGACATTCCTGAGTACGCAAGCAGACTCTCGTAA
TTACTTTGTGGGAGGCGAGACGCTTTAAATAATCGAAGAATGCTTCCTAT
TTTCAGATTGGATCTGTGCTGTGACACACACTTACTTTGATCATAGTTGT
CCTCGATATTCCTGTTATGAAATAGACAGAGAGGGATAAAGATATGACTT
GAAAGTACACATACGC
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protein sequence of rna9846

>rna9846-protein ID=rna9846-protein|Name=rna9846|organism=Nannochloropsis gaditana|type=polypeptide|length=508bp
MLMPAWTDNHRFYVLGGILTRDQIDERLCMDMMVAGRRMFLQVEGNFGVR
DLDEDWSWGKSHNVADPDEVVALGGKVLCHVSGEGNDVEEEAVLVPTRST
VDPHVNGLVHIIRCPVADAFPLDAGDVDVTVRVVFGGNQTQDSIKYGWEW
PRSNGTDAGRGQGKGGEERFRVVVPRATRHAGYFSYLPEASKLDPWQAQP
DKLHLCVAGLYTNFTCPLLDQTLEFVEYHTQQGVAHIYLGVDYPVGSESW
KAVLRVLRPYIDERKVSVTSTQSVRGPGWIGTEHFKLYFYASCLAYTKGL
ATWVGIWDIDEYLVPRDEGASTIVQSLDTVLREADKTAKDVCFMSFTSFG
FMEVKELRTIGNRTWAGQMFGHWRQAKSDDIWTKSILSNRNAYVAGFHYP
GACRDVGDRRWGENPRADLWRINASVLAMHHYRGKVSSVKQPKSNAAEDD
EYGMRLFPAVLDGLRSRKADEIVERECGFRPSMAVEYVEGPEEQGRVAVV
GVPRKRNE
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mRNA from alignment at KK037256.1:251250..252776-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9846 ID=rna9846|Name=rna9846|organism=Nannochloropsis gaditana|type=mRNA|length=1527bp|location=Sequence derived from alignment at KK037256.1:251250..252776- (Nannochloropsis gaditana)
ATGCTCATGCCCGCTTGGACGGACAACCATCGCTTCTATGTGTTGGGTGG TATCTTGACACGGGACCAGATCGATGAGCGTTTGTGCATGGACATGATGG TGGCGGGTCGACGCATGTTCCTGCAGGTTGAAGGTAATTTCGGTGTGCGT GACCTCGACGAGGATTGGTCATGGGGGAAGTCACACAACGTGGCAGATCC CGACGAGGTCGTGGCGTTGGGTGGGAAAGTACTGTGTCACGTCAGCGGAG AGGGGAACGACGTGGAGGAAGAGGCCGTGCTTGTCCCGACAAGGAGCACT GTCGATCCTCACGTGAACGGACTCGTCCATATCATCCGTTGTCCTGTAGC GGATGCCTTTCCGCTGGACGCTGGAGACGTGGATGTGACCGTCCGGGTCG TATTTGGCGGCAATCAAACACAGGACTCCATCAAGTATGGATGGGAGTGG CCCCGAAGCAACGGCACGGACGCTGGTCGAGGGCAGGGCAAGGGCGGCGA AGAGCGGTTCCGAGTCGTCGTGCCACGCGCGACGCGTCACGCGGGCTACT TTAGCTACCTACCAGAGGCTTCCAAACTGGATCCATGGCAAGCTCAGCCC GACAAACTGCACCTCTGTGTGGCGGGACTGTACACAAACTTTACCTGTCC GCTGCTCGATCAGACGTTGGAGTTCGTCGAGTACCACACACAGCAAGGGG TGGCGCACATCTACCTGGGAGTCGACTATCCTGTAGGATCGGAGTCGTGG AAGGCTGTGCTGCGGGTGCTGCGGCCTTACATAGACGAGCGAAAGGTGTC CGTTACGTCGACACAGAGCGTGCGAGGCCCTGGATGGATCGGGACGGAAC ACTTCAAGCTCTACTTCTACGCCTCTTGTCTCGCCTACACCAAGGGCTTG GCTACGTGGGTAGGCATCTGGGACATCGACGAGTACCTGGTGCCACGTGA CGAGGGCGCAAGCACGATTGTGCAGTCGCTTGACACCGTGCTGAGAGAGG CTGACAAGACAGCGAAGGACGTCTGTTTCATGTCTTTCACGTCATTTGGC TTCATGGAGGTCAAGGAGCTCAGGACCATCGGCAACCGGACATGGGCGGG ACAGATGTTTGGGCACTGGCGGCAAGCAAAGAGTGACGACATATGGACGA AGTCGATCCTGTCCAACCGAAACGCCTATGTTGCTGGTTTCCACTACCCG GGAGCTTGCAGGGATGTAGGGGATAGACGATGGGGCGAGAATCCACGCGC AGACCTCTGGCGTATCAATGCAAGCGTACTGGCCATGCATCACTATCGAG GGAAGGTGTCCTCGGTGAAACAGCCGAAGTCCAACGCCGCGGAAGACGAC GAGTACGGCATGCGTCTTTTCCCCGCGGTCTTGGACGGCCTACGGTCAAG GAAGGCAGACGAGATCGTGGAGAGGGAGTGCGGCTTCCGTCCGTCCATGG CTGTCGAGTATGTCGAGGGTCCTGAGGAGCAGGGACGAGTAGCCGTGGTG GGAGTGCCAAGGAAGAGAAATGAGTAG
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Coding sequence (CDS) from alignment at KK037256.1:251250..252776-

>rna9846 ID=rna9846|Name=rna9846|organism=Nannochloropsis gaditana|type=CDS|length=1527bp|location=Sequence derived from alignment at KK037256.1:251250..252776- (Nannochloropsis gaditana)
ATGCTCATGCCCGCTTGGACGGACAACCATCGCTTCTATGTGTTGGGTGG
TATCTTGACACGGGACCAGATCGATGAGCGTTTGTGCATGGACATGATGG
TGGCGGGTCGACGCATGTTCCTGCAGGTTGAAGGTAATTTCGGTGTGCGT
GACCTCGACGAGGATTGGTCATGGGGGAAGTCACACAACGTGGCAGATCC
CGACGAGGTCGTGGCGTTGGGTGGGAAAGTACTGTGTCACGTCAGCGGAG
AGGGGAACGACGTGGAGGAAGAGGCCGTGCTTGTCCCGACAAGGAGCACT
GTCGATCCTCACGTGAACGGACTCGTCCATATCATCCGTTGTCCTGTAGC
GGATGCCTTTCCGCTGGACGCTGGAGACGTGGATGTGACCGTCCGGGTCG
TATTTGGCGGCAATCAAACACAGGACTCCATCAAGTATGGATGGGAGTGG
CCCCGAAGCAACGGCACGGACGCTGGTCGAGGGCAGGGCAAGGGCGGCGA
AGAGCGGTTCCGAGTCGTCGTGCCACGCGCGACGCGTCACGCGGGCTACT
TTAGCTACCTACCAGAGGCTTCCAAACTGGATCCATGGCAAGCTCAGCCC
GACAAACTGCACCTCTGTGTGGCGGGACTGTACACAAACTTTACCTGTCC
GCTGCTCGATCAGACGTTGGAGTTCGTCGAGTACCACACACAGCAAGGGG
TGGCGCACATCTACCTGGGAGTCGACTATCCTGTAGGATCGGAGTCGTGG
AAGGCTGTGCTGCGGGTGCTGCGGCCTTACATAGACGAGCGAAAGGTGTC
CGTTACGTCGACACAGAGCGTGCGAGGCCCTGGATGGATCGGGACGGAAC
ACTTCAAGCTCTACTTCTACGCCTCTTGTCTCGCCTACACCAAGGGCTTG
GCTACGTGGGTAGGCATCTGGGACATCGACGAGTACCTGGTGCCACGTGA
CGAGGGCGCAAGCACGATTGTGCAGTCGCTTGACACCGTGCTGAGAGAGG
CTGACAAGACAGCGAAGGACGTCTGTTTCATGTCTTTCACGTCATTTGGC
TTCATGGAGGTCAAGGAGCTCAGGACCATCGGCAACCGGACATGGGCGGG
ACAGATGTTTGGGCACTGGCGGCAAGCAAAGAGTGACGACATATGGACGA
AGTCGATCCTGTCCAACCGAAACGCCTATGTTGCTGGTTTCCACTACCCG
GGAGCTTGCAGGGATGTAGGGGATAGACGATGGGGCGAGAATCCACGCGC
AGACCTCTGGCGTATCAATGCAAGCGTACTGGCCATGCATCACTATCGAG
GGAAGGTGTCCTCGGTGAAACAGCCGAAGTCCAACGCCGCGGAAGACGAC
GAGTACGGCATGCGTCTTTTCCCCGCGGTCTTGGACGGCCTACGGTCAAG
GAAGGCAGACGAGATCGTGGAGAGGGAGTGCGGCTTCCGTCCGTCCATGG
CTGTCGAGTATGTCGAGGGTCCTGAGGAGCAGGGACGAGTAGCCGTGGTG
GGAGTGCCAAGGAAGAGAAATGAGTAG
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Synonyms
Publications