rna9789, rna9789 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9789
Unique Name	rna9789
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1843
Alignment location	KK037256.1:113470..115596 +

Link to JBrowse

Properties


Property Name	Value
Product	mitochondrial carrier protein
Orig transcript id	gnl\|cribi\|Naga_100061g6.8576.mrna
Orig protein id	gnl\|cribi\|Naga_100061g6.8576
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037256.1	supercontig	KK037256.1:113470..115596 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100061g6	gene9504	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9789	rna9789-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20943.1	cds9758	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037256.1:113470..115596+
coding sequence from alignment at KK037256.1:113470..115596+

mRNA sequence

>rna9789 ID=rna9789|Name=rna9789|organism=Nannochloropsis gaditana|type=mRNA|length=1843bp
CCTTGCCAGCTTAAAAGCCTCGGAGACCCGAGTATGGTCCCGGCTTACCC
CAATGGGAACACAAGTAGTCATCAACGCCGCCTTCGCTTACCATTTCCAC
ATTCTTATGCTTTCTTTGAAACCTGACAGAAAGCGCAGTCATGCATACGT
CCTTTTCTCAGTCCACGGCGACCGCCGAGGGTTGCAGGCGCGTGCAAGCA
GCCAGCATGGGGGGCGGGTCCGGCGGAGACAGTAAGACAGCCGCCGCACG
CATTCTCGGCTCAGGCTCTGCCGGTGTTTTTGAATTGGCCTTATTCCACC
CATTCGACACCGCGGCGAAGCGTTTGATGAGCTGGGAGGTAAGGACTGTG
TCCCGAATCTCGGAGGAAAGAAAAATGTGGTGGCATCCCTTGTATGATAG
TTTACGTGGAGCGAACACCCTTTCGAGGAACGAGGAGGGTGCCAGTGGCG
CGGGTGCCGCGAGGCCTCTGCCGGCTGCCCAGCCAGCCTTCTTTGGGAAA
TGAGAGAGAAGAAGGGTTCTGCGACTCACAAGTGCTCCTCCTCCCTCCCA
ATCACCCCCGTGACAGGGTCGGATCATAGTGGCCGGGCACACCATGACCA
ACCTGAACAACGCGGTCTTCCGCAATCAAGCGGCCGCGGCCCCCATAAGC
AAGTGGCTCTCTCTCTTCCCCGGCGTCACCTTTGGCGCCGCTTACAAGGT
CCTCCAGCGCGCCTATAAATTCGGAGGTCAGCCCTTCGTGCGGGATTTCC
TGACGCAGCACTATCAGGAAAACTTCGAGAACGCGGTGGGGAAGAAGAAC
GGGAAGACTATGATCTACGCCACTGCCGGCTCCATCATGGGGGTGGGGGA
GATCGTTCTGCTGCCTTTGGACGTGCTCAAGATCAAGGCGCAGACGAATC
CGGAGGCTTTCAAGGGGCGTGGCCTTTTCAAGATCTTCGCGGAGGAGGGC
TGGGGCCTGTACCGAGGGGCGACCTGGACAGCGGCTCGGAACGCTCCGGG
TAGCTTTGCGCTTTTTGGAGGCTCGGCCGCGATGAAAGACTACGTCTTCA
AGCTCGAAAAGTACAGCGACGCCACGTTCTTTCAGGACTCTATGGCTTCG
ATAGCGGGGGCTGTTGCGTCCATTAGCGTGGCGCAGCCGCTGGACGTGAT
CAAGACGCGCATTCAGAAGCGCGATTTCAAGGACAAGACATCGGGGATGA
GCATCCTGAGCGACCTGGTGAAAAATGAGGGTTTTGGCGCCTTCTTTAAG
GGACTGACGCCCAAACTGATCGTGATCGGGCCCAAGCTGGTCTTCTCTTT
CACCATCGCGCAGCAGCTCATGTCCTTCTTCGAACGGCGCTTCTAAAGCC
AGGGCGGGAAGGAGGACGCTAGCTACGGAAAGGGGCGAGCGGTCCATTTT
GAGCGAGGACTGCCGCTGAGGAGGGAAAAGGCATGAGGCAAGCGTCGCAG
GAGGAGCATCCCATGAAATCCAGGACACACGGGGAATTCCAGGAGCGAGG
AGAGGGCGTGTTTCAAGCCTTGCGTGTCCGGTGGGCGAAGAAAGAGGGGG
ACTGGATTGTTTTTGTAGGCGCCGGAGCGGAAAGGGCAAGGGAGGGATGT
ATGTGGGGGGGACTGTCCGGATCCACCCCGCAGACATACCACACCAACAA
TTTTTGCATGTGTTAATCTTATGGCATAAACGACAAAGAACACGCTATAG
CGAGAGGATAGGCAGGCCACTGGCTGAGCTGGATGTTTTTTTTTGTGGCC
GAGGTGGACGGAGCACTTCAGAGAAGCAAGTGAAAGGAGAAAAGACCGCC
CTGAATGCCTCCTCCAGGCCTCAGAAGACATCTGCTTTAACGG

protein sequence of rna9789

>rna9789-protein ID=rna9789-protein|Name=rna9789|organism=Nannochloropsis gaditana|type=polypeptide|length=325bp
MHTSFSQSTATAEGCRRVQAASMGGGSGGDSKTAAARILGSGSAGVFELA
LFHPFDTAAKRLMSWEGRIIVAGHTMTNLNNAVFRNQAAAAPISKWLSLF
PGVTFGAAYKVLQRAYKFGGQPFVRDFLTQHYQENFENAVGKKNGKTMIY
ATAGSIMGVGEIVLLPLDVLKIKAQTNPEAFKGRGLFKIFAEEGWGLYRG
ATWTAARNAPGSFALFGGSAAMKDYVFKLEKYSDATFFQDSMASIAGAVA
SISVAQPLDVIKTRIQKRDFKDKTSGMSILSDLVKNEGFGAFFKGLTPKL
IVIGPKLVFSFTIAQQLMSFFERRF

mRNA from alignment at KK037256.1:113470..115596+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9789 ID=rna9789|Name=rna9789|organism=Nannochloropsis gaditana|type=mRNA|length=2127bp|location=Sequence derived from alignment at KK037256.1:113470..115596+ (Nannochloropsis gaditana)
CCTTGCCAGCTTAAAAGCCTCGGAGACCCGAGTATGGTCCCGGCTTACCC
CAATGGGAACACAAGTAGTCATCAACGCCGCCTTCGCTTACCATTTCCAC
ATTCTTATGCTTTCTTTGAAACCTGACAGAAAGCGCAGTCATGCATACGT
CCTTTTCTCAGTCCACGGCGACCGCCGAGGGTTGCAGGCGCGTGCAAGCA
GCCAGCATGGGGGGCGGGTCCGGCGGAGACAGTAAGACAGCCGCCGCACG
CATTCTCGGCTCAGGCTCTGCCGGTGTTTTTGAATTGGTGAGATTTTATT
TAGTCGCTAGCATGCCATGTGGCTGTGATTTGAAATCTTATTTCCGCTTT
TAAATTTTCCGCACGTAGGCCTTATTCCACCCATTCGACACCGCGGCGAA
GCGTTTGATGAGCTGGGAGGTAAGGACTGTGTCCCGAATCtcggaggaaa
gaaaaatgtggTGGCATCCCTTGTATGATAGTTTACGTGGAGCGAACACC
CTTTCGAGGAACGAGGAGGGTGCCAGTGGCGCGGGTGCCGCGAGGCCTCT
GCCGGCTGCCCAGCCAGCCTTCTTTGGGAAatgagagagaagaagggttC
TGCGACTCACAagtgctcctcctccctcccaatcaCCCCCGTGACAGGGT
CGGATCATAGTGGCCGGGCACACCATGACCAACCTGAACAACGCGGTCTT
CCGCAATCAAGCGGCCGCGGCCCCCATAAGCAAGtggctctctctcttcc
ccggCGTCACCTTTGGCGCCGCTTACAAGGTCCTCCAGCGCGCCTATAAA
TTCGGAGGTCAGCCCTTCGTGCGGGATTTCCTGACGCAGCACTATCAGGA
AAACTTCGAGAAcgcggtggggaagaagaacggGAAGACTATGATCTACG
CCACTGCCGGCTCCATcatgggggtgggggagatcGTTCTGCTGCCTTTG
GACGTGCTCAAGATCAAGGCGCAGACGAATCCGGAGGCTTTCAAGGGGCG
TGGCCTTTTCAAGATcttcgcggaggagggctggggcCTGTACCGAGGGG
CGACCTGGACAGCGGCTCGGAAcgctccgggtagctttgcGCTTTTTGGA
GGCTCGGCCGCGATGAAAGACTACGTCTTCAAGCTCGAAAAGTACAGCGA
CGCCACGTTCTTTCAGGACTCTATGGCTTCGATAGCGGGGGCTGTTGCGT
CCATTAGCGTGGCGCAGCCGCTggtaagaaaggagggggagagaaagcag
ggaggaaggcgggggagaaaggggagaaggagtgtCCTTtgcgtggggga
gaaggagtgtCCTTCGGGTGGGTGGTACGGAAGCGAGCGGTTTCAGGATT
TGGTGGCGCCTGTGTGGGCGTTCTCAGCTCCTCGCAACGTATGCTGACCC
gtgctttcccttcttttctcgcaCAGGACGTGATCAAGACGCGCATTCAG
AAGCGCGATTTCAAGGACAAGACATCGGGGATGAGCATCCTGAGCGACCT
GGTGAAAAATGAGGGTTTTGGCGCCTTCTTTAAGGGACTGACGCCCAAAC
TGATCGTGATCGGGCCCAAGCTGGTCTTCTCTTTCACCATCGCGCAGCAG
CTCATGTCCTTCTTCGAACGGCGCTTCTAAagccagggcgggaaggagga
cgctaGCTACGGAAAGGGGCGAGCGGTCCATTTTGAGCGAGGACTGCcgc
tgaggagggaaaaggcatgAGGCAAGCGTCGCAGGAGGAGCATCCCATGA
AATCCAGGACACACGGGGAATTCcaggagcgaggagagggcgtgTTTCAA
GCCTTGCGTGTCCGGtgggcgaagaaagagggggactGGATTGTTTTTGT
AGGCGCCGGAGCggaaagggcaagggagggatgtatGTGGGGGGGACTGT
CCGGATCCACCCCGCAGACATACCACACCAACAATTTTTGCATGTGTTAA
TCTTATGGCATAAACGACAAAGAACACGCTATAGCGAGAGGATAGGCAGG
CCACTGGCTGAGCTGGATGTTTTTTTTTGTGGCCGAGGTGGACGGAGCAC
TTCAGAGAAGCAAgtgaaaggagaaaagaccGCCCTGaatgcctcctcca
ggcctcAGAAGACATCTGCTTTAACGG

Coding sequence (CDS) from alignment at KK037256.1:113470..115596+

>rna9789 ID=rna9789|Name=rna9789|organism=Nannochloropsis gaditana|type=CDS|length=3912bp|location=Sequence derived from alignment at KK037256.1:113470..115596+ (Nannochloropsis gaditana)
ATGCATACGTCCTTTTCTCAGTCCACGGCGACCGCCGAGGGTTGCAGGCG
CGTGCAAGCAGCCAGCATGGGGGGCGGGTCCGGCGGAGACAGTAAGACAG
CCGCCGCACGCATTCTCGGCTCAGGCTCTGCCGGTGTTTTTGAATTGGCC
TTATTCCACCCATTCGACACCGCGGCGAAGCGTTTGATGAGCTGGGAGGG
TCGGATCATAGTGGCCGGGCACACCATGACCAACCTGAACAACGCGGTCT
TCCGCAATCAAGCGGCCGCGGCCCCCATAAGCAAGtggctctctctcttc
cccggCGTCACCTTTGGCGCCGCTTACAAGGTCCTCCAGCGCGCCTATAA
ATTCGGAGGTCAGCCCTTCGTGCGGGATTTCCTGACGCAGCACTATCAGG
AAAACTTCGAGAAcgcggtggggaagaagaacggGAAGACTATGATCTAC
GCCACTGCCGGCTCCATcatgggggtgggggagatcGTTCTGCTGCCTTT
GGACGTGCTCAAGATCAAGGCGCAGACGAATCCGGAGGCTTTCAAGGGGC
GTGGCCTTTTCAAGATcttcgcggaggagggctggggcCTGTACCGAGGG
GCGACCTGGACAGCGGCTCGGAAcgctccgggtagctttgcGCTTTTTGG
AGGCTCGGCCGCGATGAAAGACTACGTCTTCAAGCTCGAAAAGTACAGCG
ACGCCACGTTCTTTCAGGACTCTATGGCTTCGATAGCGGGGGCTGTTGCG
TCCATTAGCGTGGCGCAGCCGCTgGACGTGATCAAGACGCGCATTCAGAA
GCGCGATTTCAAGGACAAGACATCGGGGATGAGCATCCTGAGCGACCTGG
TGAAAAATGAGGGTTTTGGCGCCTTCTTTAAGGGACTGACGCCCAAACTG
ATCGTGATCGGGCCCAAGCTGGTCTTCTCTTTCACCATCGCGCAGCAGCT
CATGTCCTTCTTCGAACGGCGCTTCTAAATGCATACGTCCTTTTCTCAGT
CCACGGCGACCGCCGAGGGTTGCAGGCGCGTGCAAGCAGCCAGCATGGGG
GGCGGGTCCGGCGGAGACAGTAAGACAGCCGCCGCACGCATTCTCGGCTC
AGGCTCTGCCGGTGTTTTTGAATTGGCCTTATTCCACCCATTCGACACCG
CGGCGAAGCGTTTGATGAGCTGGGAGGGTCGGATCATAGTGGCCGGGCAC
ACCATGACCAACCTGAACAACGCGGTCTTCCGCAATCAAGCGGCCGCGGC
CCCCATAAGCAAGtggctctctctcttccccggCGTCACCTTTGGCGCCG
CTTACAAGGTCCTCCAGCGCGCCTATAAATTCGGAGGTCAGCCCTTCGTG
CGGGATTTCCTGACGCAGCACTATCAGGAAAACTTCGAGAAcgcggtggg
gaagaagaacggGAAGACTATGATCTACGCCACTGCCGGCTCCATcatgg
gggtgggggagatcGTTCTGCTGCCTTTGGACGTGCTCAAGATCAAGGCG
CAGACGAATCCGGAGGCTTTCAAGGGGCGTGGCCTTTTCAAGATcttcgc
ggaggagggctggggcCTGTACCGAGGGGCGACCTGGACAGCGGCTCGGA
AcgctccgggtagctttgcGCTTTTTGGAGGCTCGGCCGCGATGAAAGAC
TACGTCTTCAAGCTCGAAAAGTACAGCGACGCCACGTTCTTTCAGGACTC
TATGGCTTCGATAGCGGGGGCTGTTGCGTCCATTAGCGTGGCGCAGCCGC
TgGACGTGATCAAGACGCGCATTCAGAAGCGCGATTTCAAGGACAAGACA
TCGGGGATGAGCATCCTGAGCGACCTGGTGAAAAATGAGGGTTTTGGCGC
CTTCTTTAAGGGACTGACGCCCAAACTGATCGTGATCGGGCCCAAGCTGG
TCTTCTCTTTCACCATCGCGCAGCAGCTCATGTCCTTCTTCGAACGGCGC
TTCTAAATGCATACGTCCTTTTCTCAGTCCACGGCGACCGCCGAGGGTTG
CAGGCGCGTGCAAGCAGCCAGCATGGGGGGCGGGTCCGGCGGAGACAGTA
AGACAGCCGCCGCACGCATTCTCGGCTCAGGCTCTGCCGGTGTTTTTGAA
TTGGCCTTATTCCACCCATTCGACACCGCGGCGAAGCGTTTGATGAGCTG
GGAGGGTCGGATCATAGTGGCCGGGCACACCATGACCAACCTGAACAACG
CGGTCTTCCGCAATCAAGCGGCCGCGGCCCCCATAAGCAAGtggctctct
ctcttccccggCGTCACCTTTGGCGCCGCTTACAAGGTCCTCCAGCGCGC
CTATAAATTCGGAGGTCAGCCCTTCGTGCGGGATTTCCTGACGCAGCACT
ATCAGGAAAACTTCGAGAAcgcggtggggaagaagaacggGAAGACTATG
ATCTACGCCACTGCCGGCTCCATcatgggggtgggggagatcGTTCTGCT
GCCTTTGGACGTGCTCAAGATCAAGGCGCAGACGAATCCGGAGGCTTTCA
AGGGGCGTGGCCTTTTCAAGATcttcgcggaggagggctggggcCTGTAC
CGAGGGGCGACCTGGACAGCGGCTCGGAAcgctccgggtagctttgcGCT
TTTTGGAGGCTCGGCCGCGATGAAAGACTACGTCTTCAAGCTCGAAAAGT
ACAGCGACGCCACGTTCTTTCAGGACTCTATGGCTTCGATAGCGGGGGCT
GTTGCGTCCATTAGCGTGGCGCAGCCGCTgGACGTGATCAAGACGCGCAT
TCAGAAGCGCGATTTCAAGGACAAGACATCGGGGATGAGCATCCTGAGCG
ACCTGGTGAAAAATGAGGGTTTTGGCGCCTTCTTTAAGGGACTGACGCCC
AAACTGATCGTGATCGGGCCCAAGCTGGTCTTCTCTTTCACCATCGCGCA
GCAGCTCATGTCCTTCTTCGAACGGCGCTTCTAAATGCATACGTCCTTTT
CTCAGTCCACGGCGACCGCCGAGGGTTGCAGGCGCGTGCAAGCAGCCAGC
ATGGGGGGCGGGTCCGGCGGAGACAGTAAGACAGCCGCCGCACGCATTCT
CGGCTCAGGCTCTGCCGGTGTTTTTGAATTGGCCTTATTCCACCCATTCG
ACACCGCGGCGAAGCGTTTGATGAGCTGGGAGGGTCGGATCATAGTGGCC
GGGCACACCATGACCAACCTGAACAACGCGGTCTTCCGCAATCAAGCGGC
CGCGGCCCCCATAAGCAAGtggctctctctcttccccggCGTCACCTTTG
GCGCCGCTTACAAGGTCCTCCAGCGCGCCTATAAATTCGGAGGTCAGCCC
TTCGTGCGGGATTTCCTGACGCAGCACTATCAGGAAAACTTCGAGAAcgc
ggtggggaagaagaacggGAAGACTATGATCTACGCCACTGCCGGCTCCA
TcatgggggtgggggagatcGTTCTGCTGCCTTTGGACGTGCTCAAGATC
AAGGCGCAGACGAATCCGGAGGCTTTCAAGGGGCGTGGCCTTTTCAAGAT
cttcgcggaggagggctggggcCTGTACCGAGGGGCGACCTGGACAGCGG
CTCGGAAcgctccgggtagctttgcGCTTTTTGGAGGCTCGGCCGCGATG
AAAGACTACGTCTTCAAGCTCGAAAAGTACAGCGACGCCACGTTCTTTCA
GGACTCTATGGCTTCGATAGCGGGGGCTGTTGCGTCCATTAGCGTGGCGC
AGCCGCTgGACGTGATCAAGACGCGCATTCAGAAGCGCGATTTCAAGGAC
AAGACATCGGGGATGAGCATCCTGAGCGACCTGGTGAAAAATGAGGGTTT
TGGCGCCTTCTTTAAGGGACTGACGCCCAAACTGATCGTGATCGGGCCCA
AGCTGGTCTTCTCTTTCACCATCGCGCAGCAGCTCATGTCCTTCTTCGAA
CGGCGCTTCTAA

Synonyms

Publications