rna9763, rna9763 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9763
Unique Name	rna9763
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1600
Alignment location	KK037256.1:55602..57569 -

Link to JBrowse

Properties


Property Name	Value
Product	zinc-binding dehydrogenase family protein
Orig transcript id	gnl\|cribi\|Naga_100061g29.8565.mrna
Orig protein id	gnl\|cribi\|Naga_100061g29.8565
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037256.1	supercontig	KK037256.1:55602..57569 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100061g29	gene9482	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9763	rna9763-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20932.1	cds9732	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037256.1:55602..57569-
coding sequence from alignment at KK037256.1:55602..57569-

mRNA sequence

>rna9763 ID=rna9763|Name=rna9763|organism=Nannochloropsis gaditana|type=mRNA|length=1600bp
ATGAAGGCTTGTATAGTTATAAGATCTCATCGACCTTCAACCAATCTTCT
AGTAAATGCTTATGGCCAGCTTCTTATCGGGCATATTTACCGCGGGGCTC
GCAGCGTTTCGGGGTGGCTCGGATGCAATGCAAACGAGTACTAGCACCAA
AGCAGAACAAACTGGGGAACAAGCTGCCATTCTAAACTCGAATGAAGGCG
ACATCCTACGCAAATGCTGGAGACTGGAGCAAGCCGGAAGAATTTCGGAG
CTCTGTCGAGTGGAAGAGCCATTGCCCGCCCCTGGCGCAGGCGAGGTCCG
CGTCAAGGCTATTGGACTCAACATGGCGGACATTTTCGCGATACTCGGGG
TCCTTCATCCCAGGTCTTGAATACAGCGGCGTCGTGGACGCCCTAGGCCC
TCCAGACACAACCTCCTCCCCCTTCCCTTCCTCCACCATCAAGGCGGGGG
ACCCTGTTTACGGCTTCACGCGCTTCGGCGCCTACGCCTCTCACCTGAAT
GTCCCCCTCGCCTACGTGCGGCCCCTGCCTTCGTCCTTCTCGTTCGCGCA
AGGCGCCGCCTTCATCGTCCAGGGCCTGACTGCCTGGCACGCTATGATCG
AGTTGGGAAATCTGAAGAAGGGGCAGACGGTGCTGGTGCACTCAGCCGCG
GGGGGCGTGGGCTGCTTCGCTCTTGAGATCTGCGCAAAGTTCCAGGCATT
TCCCATCGCCACCATCGGCTCCGAGACCAAACGGGCGTTTCTGCAGTCAA
GATTTGGCCTGAATGATGGTCAGATAGTGGTCAGGGAGAAGGAGGACAGG
AAGTTTGCCCGGCAATTGAAGGACGCCGTGAGAGGGAAAAGCGGCCGGAA
TAGGGTAGGAGAAAGGGCACGGGGATCGCATGAAATGCAAGAAAAGGAGG
ACGGAGGCTTCGACCTGATATTGGATGCATTGGGGGGCATGTATTTCAAA
GAGGGCTACAAGCAATTGGCGAGGGGAGGGAGGATGATCACTTTTGGCGC
CGCTGATTACTTGTCACCGACAGACGGACCAAATTGGTGGAAGATCATCC
CACGGTATTTGACACGGCCGCGCTTGGATCCGGGGGATATGTGTGCGGAG
AATCGAGGCGTACTGGGCTTCAATCTGATCTGGTAGGTTGTATTGCGAGG
CCTTTGCTATTATTGGTGTGGCCGCGGTAGGAGGGCGAGACATCATCAAT
GTGTATTCTTATGAAGCGTTTGTGTTTTGCGAAATAGGCAATATCGAGGC
CTGGCACATTGAGTTATTTCCTTCATTATAACACTCTTATGCCCGGTCCC
TTTTCATTCTGCTACTCACACAATGCTGGTGTCAGGCTTACAGACAAGGT
CAAGGAGCTGAATGCGGAGCTTGACGACATGCTCAAGATCGATTGGAATC
CTCCTCACGTAGGAGCCACATATCCATTTCATGAACTTCCCGATGCTGTC
AGGGCGCTACAATCAGGACTGACAACGGGAAAGGTTGTGGTCTTGCTAAG
CGACGAAGAATGTGAGGGTCAGACCGCCCTTAAAGCGTAGTAATATGCAA
ATCGGGACAACATATCTGCCAAAAAAATAATAAATCTGATGTCCCTTTTA

protein sequence of rna9763

>rna9763-protein ID=rna9763-protein|Name=rna9763|organism=Nannochloropsis gaditana|type=polypeptide|length=316bp
MKATSYANAGDWSKPEEFRSSVEWKSHCPPLAQARSASRLRLLDSTWRTF
SRYSGSFIPGLEYSGVVDALGPPDTTSSPFPSSTIKAGDPVYGFTRFGAY
ASHLNVPLAYVRPLPSSFSFAQGAAFIVQGLTAWHAMIELGNLKKGQTVL
VHSAAGGVGCFALEICAKFQAFPIATIGSETKRAFLQSRFGLNDGQIVVR
EKEDRKFARQLKDAVRGKSGRNRVGERARGSHEMQEKEDGGFDLILDALG
GMYFKEGYKQLARGGRMITFGAADYLSPTDGPNWWKIIPRYLTRPRLDPG
DMCAENRGVLGFNLIW

mRNA from alignment at KK037256.1:55602..57569-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9763 ID=rna9763|Name=rna9763|organism=Nannochloropsis gaditana|type=mRNA|length=1968bp|location=Sequence derived from alignment at KK037256.1:55602..57569- (Nannochloropsis gaditana)
CTCATCGACCTTCAACCAATCTTCTAGTAAATGCTTATGGCCAGCTTCTT
ATCGGGCATATTTACCGCGGGGCTCGCAGCGTTTCGGGGTGGCTCGGATG
CAATGCAAACGAGTACTAGCACCAAAGCAGAACAAACTGGGGAACAAGCT
GCCATTCTAAACTCGAATGAAGGCGACATCCTACGCAAATGCTGGAGACT
GGAGCAAGCCGGAAGAATTTCGGAGCTCTGTCGAGTGGAAGAGCCATTGC
CCGCCCCTGGCGCAGGCGAGGTCCGCGTCAAGGTATGCTGAGAAATGAAA
CCGCGCCGTCACTCGCATAGACGGTAACATAACATTGTATTGATGAAAAA
AAGCATTCGTTGTTACTTCCGCATAAGGTTAAGGCTATTGGACTCAACAT
GGCGGACATTTTCGCGATACTCGGTAGGTTGGCGGTTAGGAGTTTTTCTT
GCATGCACCTTTGGATTTGAATATGGATTTCTTATATTGAAATGTTGTAA
GATATCTCCTATCCTATTGCTGAAGGGCTGTATGGCGCCACCCCGCAGGG
GTCCTTCATCCCAGGTCTTGAATACAGCGGCGTCGTGGACGCCCTAGGCC
CTCCAGACACAACCTCCTCCCCCTTCCCTTCCTCCACCATCAAGGCGGGG
GACCCTGTTTACGGCTTCACGCGCTTCGGCGCCTACGCCTCTCACCTGAA
TGTCCCCCTCGCCTACGTGCGGCCCCTGCCTTCGTCCTTCTCGTTCGCGC
AAGGCGCCGCCTTCATCGTCCAGGGCCTGACTGCCTGGCACGCTATGATC
GAGTTGGGAAATCTGAAGAAGGGGCAGACGGTGCTGGTGCACTCAGCCGC
GGGGGGCGTGGGCTGCTTCGCTCTTGAGATCTGCGCAAAGTTCCAGGCAT
TTCCCATCGCCACCATCGGCTCCGAGACCAAACGGGCGTTTCTGCAGTCA
AGATTTGGCCTGAATGATGGTCAGATAGTGGTCAGGGAGAAGGAGGACAG
GAAGTTTGCCCGGCAATTGAAGGACGCCGTGAGAGGGAAAAGCGGCCGGA
ATAGGGTAGGAGAAAGGGCACGGGGATCGCATGAAATGCAAGAAAAGGAG
GACGGAGGCTTCGACCTGATATTGGATGCATTGGGGGGCATGTATTTCAA
AGAGGGCTACAAGCAATTGGCGAGGGGAGGGAGGATGATCACTTTTGGCG
CCGCTGATTACTTGTCACCGACAGACGGACCAAATTGGTGGAAGATCATC
CCACGGTATTTGACACGGCCGCGCTTGGATCCGGGGGATATGTGTGCGGA
GAATCGAGGCGTACTGGGCTTCAATCTGATCTGGTAGGTTGTATTGCGAG
GCCTTTGCTATTATTGGTGTGGCCGCGGTAGGAGGGCGAGACATCATCAA
TGTGTATTCTTATGAAGCGTTTGTGTTTTGCGAAATAGGCAATATCGAGG
CCTGGCACATTGAGTTATTTCCTTCATTATAACACTCTTATGCCCGGTCC
CTTTTCATTCTGCTACTCACACAATGCTGGTGTCAGGCTTACAGACAAGG
TCAAGGAGCTGAATGCGGAGCTTGACGACATGCTCAAGGTACAGACACGA
TTACAGTGAATAAGATACGACTTTGTCTATGAGATGTATGGTGAGGGAAG
CTGTGACTCAAGTTGATGCGTGGAGATGGTTAGCTTTAGAGGATGGCGCG
CAGCGTGAATAAGGCCTCTCACACAACATTTCCGTGTTCTCTCACTCATC
GACAGATCGATTGGAATCCTCCTCACGTAGGAGCCACATATCCATTTCAT
GAACTTCCCGATGCTGTCAGGGCGCTACAATCAGGACTGACAACGGGAAA
GGTTGTGGTCTTGCTAAGCGACGAAGAATGTGAGGGTCAGACCGCCCTTA
AAGCGTAGTAATATGCAAATCGGGACAACATATCTGCCAAAAAAATAATA
AATCTGATGTCCCTTTTA

Coding sequence (CDS) from alignment at KK037256.1:55602..57569-

>rna9763 ID=rna9763|Name=rna9763|organism=Nannochloropsis gaditana|type=CDS|length=2853bp|location=Sequence derived from alignment at KK037256.1:55602..57569- (Nannochloropsis gaditana)
GGGTCCTTCATCCCAGGTCTTGAATACAGCGGCGTCGTGGACGCCCTAGG
CCCTCCAGACACAACCTCCTCCCCCTTCCCTTCCTCCACCATCAAGGCGG
GGGACCCTGTTTACGGCTTCACGCGCTTCGGCGCCTACGCCTCTCACCTG
AATGTCCCCCTCGCCTACGTGCGGCCCCTGCCTTCGTCCTTCTCGTTCGC
GCAAGGCGCCGCCTTCATCGTCCAGGGCCTGACTGCCTGGCACGCTATGA
TCGAGTTGGGAAATCTGAAGAAGGGGCAGACGGTGCTGGTGCACTCAGCC
GCGGGGGGCGTGGGCTGCTTCGCTCTTGAGATCTGCGCAAAGTTCCAGGC
ATTTCCCATCGCCACCATCGGCTCCGAGACCAAACGGGCGTTTCTGCAGT
CAAGATTTGGCCTGAATGATGGTCAGATAGTGGTCAGGGAGAAGGAGGAC
AGGAAGTTTGCCCGGCAATTGAAGGACGCCGTGAGAGGGAAAAGCGGCCG
GAATAGGGTAGGAGAAAGGGCACGGGGATCGCATGAAATGCAAGAAAAGG
AGGACGGAGGCTTCGACCTGATATTGGATGCATTGGGGGGCATGTATTTC
AAAGAGGGCTACAAGCAATTGGCGAGGGGAGGGAGGATGATCACTTTTGG
CGCCGCTGATTACTTGTCACCGACAGACGGACCAAATTGGTGGAAGATCA
TCCCACGGTATTTGACACGGCCGCGCTTGGATCCGGGGGATATGTGTGCG
GAGAATCGAGGCGTACTGGGCTTCAATCTGATCTGGTAGGTTAAGGCTAT
TGGACTCAACATGGCGGACATTTTCGCGATACTCGATGAAGGCGACATCC
TACGCAAATGCTGGAGACTGGAGCAAGCCGGAAGAATTTCGGAGCTCTGT
CGAGTGGAAGAGCCATTGCCCGCCCCTGGCGCAGGCGAGGTCCGCGTCAA
GGGGTCCTTCATCCCAGGTCTTGAATACAGCGGCGTCGTGGACGCCCTAG
GCCCTCCAGACACAACCTCCTCCCCCTTCCCTTCCTCCACCATCAAGGCG
GGGGACCCTGTTTACGGCTTCACGCGCTTCGGCGCCTACGCCTCTCACCT
GAATGTCCCCCTCGCCTACGTGCGGCCCCTGCCTTCGTCCTTCTCGTTCG
CGCAAGGCGCCGCCTTCATCGTCCAGGGCCTGACTGCCTGGCACGCTATG
ATCGAGTTGGGAAATCTGAAGAAGGGGCAGACGGTGCTGGTGCACTCAGC
CGCGGGGGGCGTGGGCTGCTTCGCTCTTGAGATCTGCGCAAAGTTCCAGG
CATTTCCCATCGCCACCATCGGCTCCGAGACCAAACGGGCGTTTCTGCAG
TCAAGATTTGGCCTGAATGATGGTCAGATAGTGGTCAGGGAGAAGGAGGA
CAGGAAGTTTGCCCGGCAATTGAAGGACGCCGTGAGAGGGAAAAGCGGCC
GGAATAGGGTAGGAGAAAGGGCACGGGGATCGCATGAAATGCAAGAAAAG
GAGGACGGAGGCTTCGACCTGATATTGGATGCATTGGGGGGCATGTATTT
CAAAGAGGGCTACAAGCAATTGGCGAGGGGAGGGAGGATGATCACTTTTG
GCGCCGCTGATTACTTGTCACCGACAGACGGACCAAATTGGTGGAAGATC
ATCCCACGGTATTTGACACGGCCGCGCTTGGATCCGGGGGATATGTGTGC
GGAGAATCGAGGCGTACTGGGCTTCAATCTGATCTGGTAGGTTAAGGCTA
TTGGACTCAACATGGCGGACATTTTCGCGATACTCGATGAAGGCGACATC
CTACGCAAATGCTGGAGACTGGAGCAAGCCGGAAGAATTTCGGAGCTCTG
TCGAGTGGAAGAGCCATTGCCCGCCCCTGGCGCAGGCGAGGTCCGCGTCA
AGGGGTCCTTCATCCCAGGTCTTGAATACAGCGGCGTCGTGGACGCCCTA
GGCCCTCCAGACACAACCTCCTCCCCCTTCCCTTCCTCCACCATCAAGGC
GGGGGACCCTGTTTACGGCTTCACGCGCTTCGGCGCCTACGCCTCTCACC
TGAATGTCCCCCTCGCCTACGTGCGGCCCCTGCCTTCGTCCTTCTCGTTC
GCGCAAGGCGCCGCCTTCATCGTCCAGGGCCTGACTGCCTGGCACGCTAT
GATCGAGTTGGGAAATCTGAAGAAGGGGCAGACGGTGCTGGTGCACTCAG
CCGCGGGGGGCGTGGGCTGCTTCGCTCTTGAGATCTGCGCAAAGTTCCAG
GCATTTCCCATCGCCACCATCGGCTCCGAGACCAAACGGGCGTTTCTGCA
GTCAAGATTTGGCCTGAATGATGGTCAGATAGTGGTCAGGGAGAAGGAGG
ACAGGAAGTTTGCCCGGCAATTGAAGGACGCCGTGAGAGGGAAAAGCGGC
CGGAATAGGGTAGGAGAAAGGGCACGGGGATCGCATGAAATGCAAGAAAA
GGAGGACGGAGGCTTCGACCTGATATTGGATGCATTGGGGGGCATGTATT
TCAAAGAGGGCTACAAGCAATTGGCGAGGGGAGGGAGGATGATCACTTTT
GGCGCCGCTGATTACTTGTCACCGACAGACGGACCAAATTGGTGGAAGAT
CATCCCACGGTATTTGACACGGCCGCGCTTGGATCCGGGGGATATGTGTG
CGGAGAATCGAGGCGTACTGGGCTTCAATCTGATCTGGTAGGTTAAGGCT
ATTGGACTCAACATGGCGGACATTTTCGCGATACTCGATGAAGGCGACAT
CCTACGCAAATGCTGGAGACTGGAGCAAGCCGGAAGAATTTCGGAGCTCT
GTCGAGTGGAAGAGCCATTGCCCGCCCCTGGCGCAGGCGAGGTCCGCGTC
AAG

Synonyms

Publications