rna9744, rna9744 (mRNA) Nannochloropsis gaditana

Overview
Namerna9744
Unique Namerna9744
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1254
Alignment locationKK037256.1:6499..7904 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100781g3.6050.mrna
Orig protein idgnl|cribi|Naga_100781g3.6050
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037256.1supercontigKK037256.1:6499..7904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100781g3gene9464Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9744rna9744-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20960.1cds9713Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9744 ID=rna9744|Name=rna9744|organism=Nannochloropsis gaditana|type=mRNA|length=1254bp
ATGGTGGCAGAATCCGAAAACGATATGGCAGAGATGGAAGAGATATTCAG
CCTGGAAACGGCAGACGAGGAACCAACCACAGTCGAGGTTTTGGTCTCCC
CCATAGCCCCCCACCTTGCCAACCGGGCCCTGAAAAGACTGCATTCCCTC
CTCCCCACCCCAGACGCACAGCTTGGGCACCTCAAACGCGTCCGAAAAGA
CCCTGATTCCTCCTCCCTCCTCCTCCTCCTCTCCACCCCCGCCCGCTACC
ATGCCCTCACCCCCTCACTTCGTCTCGCCCTCGAACAAGACTTGGACCTG
CATGTGGAGGTTCGGGAGGTGCCTCGACGTCCGTGCAAGACCCGACATGA
GCAGGAAATAGCCACTGGCTTGTGGCCCCTGACCTACCAAGGGATTGAGG
AGGTGGTGGAGAAGGAGAAGGCCGCCCTGGATAGAGATCGAAAGGGCAAG
GAAGTTTTTGCGGATTGTCTGGGGTTTGGCTGGAGGGTCCATGTGGTGAT
GCGTTGTGTGGACCGGGTGGCGGATTTGGTGGCTTCGGCCGAAAAAGGGG
ACGGGATGGGAAGATACAAGAAGGGGGGAAAGGGAGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGTGGGTGGGCTGCCAAGAAGGGAAGGAGGAGAAGGA
GAAGGCGGAGAGAGGGCGGGGGGTCGCGTCAGGCCGTGCTGGAGGGAGGG
AGTTAGCGGGCGGGGCCCCAGGCTTGTCAGTCCTATCAACATCCCGAGAG
ACTTCATCTTCTTTGAAAATTGATTCGGGGCTTGGGTTAGGATTAGGGTT
CAATGTGCTAATAGCAGGAGAGAGGAGAGGGAAGCCATCAGGTTCCGTCT
GCTTCCAAGGCGTTCACGGGAGGAATTTGGAAGAGGCCCAAGCGCGGGAG
GACAAGGAGGCATCGTGGAGAGGAGCGCTCCCTGAGGACCAATATCTGTG
CACCGGTTTAGATGCTTACATGACTCATGAACCTTGCGTCATGTGCGCCA
TGGCCCTGGTCCACTCACGGATACGGAGGGTGTTTTATTGTCTCCCTTGT
CCAGAGGAAGGGGCATTGGAGTCCCACTTTGGCGTGCATGCTTTGCCGTC
GTTGAATCATCGGTATCGTGTGTTTCGTTGGAGGGGTCAGGAGGAGGAAG
GGCAGCCTTTCCCCTCGCAAGGGGGGAGAGGGGAGGGCGGGAGCGAAGAG
GACTGGGCAAGATCTGATGTCCCAGTCGATGACATTGAACTGAAAGTAAA
ATAA
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protein sequence of rna9744

>rna9744-protein ID=rna9744-protein|Name=rna9744|organism=Nannochloropsis gaditana|type=polypeptide|length=115bp
MTHSFVGYYEQHRPSANPQAGSKVYNTDSSIQERRHKLESQKNCQRRYRE
SVSRHGLPAPRTWPRPHATTKPPYATTPNGNDIKNKYPRSLNASWKHSNI
PVRNINGHVDGVNIK
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mRNA from alignment at KK037256.1:6499..7904+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9744 ID=rna9744|Name=rna9744|organism=Nannochloropsis gaditana|type=mRNA|length=1406bp|location=Sequence derived from alignment at KK037256.1:6499..7904+ (Nannochloropsis gaditana)
TATCGTTTTCGGATTCTGCCACCATCCGATATTCCTACCGCGCTATCTTG
TCATGAAGCTTCCTGTTGTTCATCCTGCGTTCAGCAATGATGATAAAAGA
AAATTTAACGAGCCTTGTCGCCCTtatcctttccccttccatgATACTAA
TCGCTCCCGTGACTGTGGTCACGTTGGGGCGTGACTTCACTGAGGGGAGC
AAGGAGCAAGTACGTGCCTGCCAAAACGTCACTTAGTAGTGCCCTGCAAC
AAAATAACTGCCCAAAAAGTGTCTCTGGTGACGGGATGTATGCCAAACAA
AGTCGTGTAACGGCAGAATAAATGGACTTCTACCAGTTTTGCAGTCCGCT
TGATGTTGATGTGTGCTGTGGTTCCTTCTTACGTTAGTTACACGCTCCAC
CAAAAATAGACCCAGCATGTGACAAGTGCACCACGGTTATTTTGCCCCCC
AAAATACAAACATCCAACTGCTTGGCAACTTAAGACGAAATTGTGAAGTC
TCTGGCTTTGAAGTGTACAGAAGGAATTCCATTTCGGGCATGACCCATTC
ATTCGTCGGATACTACGAGCAGCACCGGCCATCCGCCAACCCTCAGGCCG
GTTCAAAAGTGTATAATACGGACTCCTCGATCCAAGAGCGTCGCCACAAA
CTAGAGTCCCAGAAGAATTGTCAACGACGTTATCGTGAGTCAGTATCTAG
ACATGGCCTGCCGGCGCCCaggacgtggccaaggccccATGCCACCACCA
AGCCTCCCTACGCCACTACACCAAATGGTAATGACATCAAAAATAAATAT
CCTCGATCTCTCAATGCATCTTGGAAACATTCGAATATACCGGTGCGTAA
TATTAATGGTCACGTGGATGGTGTAAACATAAAATAAGATGCGTGCTGAA
GACCTCTGTAGCCGCGGCCGCTAGTCTGGGAAAAAGTCAGGCCCCTTTTT
AACTCCGTCAAGCCAACGAAATGGTCCAGATTTTTACGACTCATCGAAGC
AATTCCAAGCATTATCTTGGCTCGAGGATCGATAATATAAGCCAGGTAGT
GGAATGTGTTAATTCGTTCTTCGACAGAAAGTCATCCTCACGCTTTCTTT
TTCGCATTTGTACATTTTTTGATGAAATGTCGTGATACATCAAACGCTTC
TTCGTCTCAGTGacaaaagaagagaaagaactGTAACCGAGATTTTCGGT
AAGCAATTGGAAGACTGGCTGGCGGCGTCAATGCGGAAGAGACGAGAAGA
GCAAGTACATCGAACCAACTTGAGAGTCCCAACTACAACGGAAGAAGTCA
CCAGGGTCAAAATAGTTTGAGAGCCCTTCTTTTGGCATTTTCGTTGTGTC
AAGtgcccacctctcccttACAACCCCGGCCACTGTACATGTCTTTGGAT
GTGTCT
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Coding sequence (CDS) from alignment at KK037256.1:6499..7904+

>rna9744 ID=rna9744|Name=rna9744|organism=Nannochloropsis gaditana|type=CDS|length=348bp|location=Sequence derived from alignment at KK037256.1:6499..7904+ (Nannochloropsis gaditana)
ATGACCCATTCATTCGTCGGATACTACGAGCAGCACCGGCCATCCGCCAA
CCCTCAGGCCGGTTCAAAAGTGTATAATACGGACTCCTCGATCCAAGAGC
GTCGCCACAAACTAGAGTCCCAGAAGAATTGTCAACGACGTTATCGTGAG
TCAGTATCTAGACATGGCCTGCCGGCGCCCaggacgtggccaaggccccA
TGCCACCACCAAGCCTCCCTACGCCACTACACCAAATGGTAATGACATCA
AAAATAAATATCCTCGATCTCTCAATGCATCTTGGAAACATTCGAATATA
CCGGTGCGTAATATTAATGGTCACGTGGATGGTGTAAACATAAAATAA
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Synonyms
Publications