EWM20974.1, cds9696 (CDS) Nannochloropsis gaditana

Overview
NameEWM20974.1
Unique Namecds9696
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037255.1:272833..274001 -
Alignment locationKK037255.1:272702..272717 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20974.1
ProductProtein of unknown function DUF2064
Orig transcript idgnl|cribi|Naga_100442g1.7159.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037255.1supercontigKK037255.1:272833..274001 -
KK037255.1supercontigKK037255.1:272702..272717 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR029044Nucleotide-diphossugar_trans
IPR018641Trfase_1_rSAM/selenodom_assoc
Homology
BLAST of EWM20974.1 vs. NCBI_GenBank
Match: gi|585100960|gb|EWM20974.1| (Protein of unknown function DUF2064 [Nannochloropsis gaditana])

HSP 1 Score: 791.956 bits (2044), Expect = 0.000e+0
Identity = 394/394 (100.00%), Postives = 394/394 (100.00%), Query Frame = 0
Query:    1 MRTRPPAPTPVLLVLTISHAVCAKRNSGWLEPWPRKIVQQDCRGYFPKTTDLVLPASVATSHYSSLWTATALPSLSMVINSISAARPPLLDRGNVPPIPPARDVGWGGDGRPERNDAYHDKIYGQHTPASLAGSATPSLAPRVYLFTKYPVPGQVKTRMIPALGREGAMRLHRRLVHRTLASLDAFRRQGCPGRRKRGQDARGEGAVVDCRVRYDDGLTGQGGMALMQAWLGMDWIYEAQGPGDLGARLAAATAMADGGEEGVGSVVVVGSDCPFLRPRHLRAAIRALSDTQEGGGEEEEEEGGHDLVLGPATDGGYWLVGLRRPCPALFRDVDWGTSRVLNQTLARAESLGLKVKLLEALSDMDRPQDLALWRPPPLTSVVIPVVNEAEEGGR 394
            MRTRPPAPTPVLLVLTISHAVCAKRNSGWLEPWPRKIVQQDCRGYFPKTTDLVLPASVATSHYSSLWTATALPSLSMVINSISAARPPLLDRGNVPPIPPARDVGWGGDGRPERNDAYHDKIYGQHTPASLAGSATPSLAPRVYLFTKYPVPGQVKTRMIPALGREGAMRLHRRLVHRTLASLDAFRRQGCPGRRKRGQDARGEGAVVDCRVRYDDGLTGQGGMALMQAWLGMDWIYEAQGPGDLGARLAAATAMADGGEEGVGSVVVVGSDCPFLRPRHLRAAIRALSDTQEGGGEEEEEEGGHDLVLGPATDGGYWLVGLRRPCPALFRDVDWGTSRVLNQTLARAESLGLKVKLLEALSDMDRPQDLALWRPPPLTSVVIPVVNEAEEGGR
Sbjct:    1 MRTRPPAPTPVLLVLTISHAVCAKRNSGWLEPWPRKIVQQDCRGYFPKTTDLVLPASVATSHYSSLWTATALPSLSMVINSISAARPPLLDRGNVPPIPPARDVGWGGDGRPERNDAYHDKIYGQHTPASLAGSATPSLAPRVYLFTKYPVPGQVKTRMIPALGREGAMRLHRRLVHRTLASLDAFRRQGCPGRRKRGQDARGEGAVVDCRVRYDDGLTGQGGMALMQAWLGMDWIYEAQGPGDLGARLAAATAMADGGEEGVGSVVVVGSDCPFLRPRHLRAAIRALSDTQEGGGEEEEEEGGHDLVLGPATDGGYWLVGLRRPCPALFRDVDWGTSRVLNQTLARAESLGLKVKLLEALSDMDRPQDLALWRPPPLTSVVIPVVNEAEEGGR 394          
BLAST of EWM20974.1 vs. NCBI_GenBank
Match: gi|751567058|ref|WP_041035956.1| (hypothetical protein [Tolypothrix campylonemoides] >gi|750915855|gb|KIJ75749.1| hypothetical protein SD81_14515 [Tolypothrix campylonemoides VB511288])

HSP 1 Score: 176.792 bits (447), Expect = 6.574e-50
Identity = 91/233 (39.06%), Postives = 132/233 (56.65%), Query Frame = 0
Query:  142 RVYLFTKYPVPGQVKTRMIPALGREGAMRLHRRLVHRTLASLDAFRRQGCPGRRKRGQDARGEGAVVDCRVRYDDGLTGQGGMALMQAWLGMDWIYEAQGPGDLGARLAAATAMADGGEEGVGSVVVVGSDCPFLRPRHLRAAIRALSDTQEGGGEEEEEEGGHDLVLGPATDGGYWLVGLRRPCPALFRDVDWGTSRVLNQTLARAESLGLKVKLLEALSDMDRPQDLALWR 374
             + +FT+YP PG+ KTR+IPALG EGA  L R++   TL+ +   ++                 + + C VR+       G + LMQ WLG D  Y+ QG GDLG+R+A +    +  + G  +V+ +G+DCP +  + L  A + L                 DLVLGPA DGGY+L+GL+RP P LF ++DWGTS+VL QT+  A++L L V  L  L+D+DRP+DL +W 
Sbjct:   11 HLIIFTRYPEPGKTKTRLIPALGTEGAANLQRQMTEHTLSQVKQLQK----------------TSAISCEVRF-----AGGNLQLMQDWLGYDIAYQPQGEGDLGSRMAQS--FYNAFQSGAETVITIGTDCPDVNDQILAEAFKQLQQ--------------RDLVLGPAVDGGYYLIGLQRPVPELFINIDWGTSQVLQQTIDTAQTLNLLVNYLPLLADIDRPEDLPIWE 206          
BLAST of EWM20974.1 vs. NCBI_GenBank
Match: gi|889970808|ref|WP_048868958.1| (hypothetical protein [Scytonema tolypothrichoides] >gi|750923064|gb|KIJ82882.1| hypothetical protein SD80_14490 [Scytonema tolypothrichoides VB-61278])

HSP 1 Score: 174.096 bits (440), Expect = 6.833e-49
Identity = 92/233 (39.48%), Postives = 131/233 (56.22%), Query Frame = 0
Query:  142 RVYLFTKYPVPGQVKTRMIPALGREGAMRLHRRLVHRTLASLDAFRRQGCPGRRKRGQDARGEGAVVDCRVRYDDGLTGQGGMALMQAWLGMDWIYEAQGPGDLGARLAAATAMADGGEEGVGSVVVVGSDCPFLRPRHLRAAIRALSDTQEGGGEEEEEEGGHDLVLGPATDGGYWLVGLRRPCPALFRDVDWGTSRVLNQTLARAESLGLKVKLLEALSDMDRPQDLALWR 374
             + +FT+YP PG+ KTR+IPALG EGA  L R++   TL+ +   ++                 +V+   VR+       G + LMQ WLG D +Y+ QG GDLG R+  +    +  E G   VV +G+DCP +  + L  A   L +               DLVLGPA DGGY+L+GL+RP P LF ++DWGTS+VL+QT++ A+ L L V  L  L+D+DRP+DL +W 
Sbjct:   11 HLIIFTRYPEPGKTKTRLIPALGTEGAANLQRQMTEHTLSQVKQLQK----------------TSVISFEVRF-----AGGNLQLMQEWLGYDLVYQPQGEGDLGLRMTQS--FLNAFESGAEKVVTIGTDCPGVNNQILAEAFAQLQEC--------------DLVLGPAVDGGYYLIGLQRPMPELFINIDWGTSQVLHQTISIAQMLNLSVTNLPHLADIDRPEDLPIWE 206          
BLAST of EWM20974.1 vs. NCBI_GenBank
Match: gi|505015446|ref|WP_015202548.1| (hypothetical protein [Crinalium epipsammum] >gi|428246647|gb|AFZ12427.1| Protein of unknown function DUF2064 [Crinalium epipsammum PCC 9333])

HSP 1 Score: 172.555 bits (436), Expect = 2.162e-48
Identity = 103/245 (42.04%), Postives = 137/245 (55.92%), Query Frame = 0
Query:  134 SATPSLAPRVYLFTKYPVPGQVKTRMIPALGREGAMRLHRRLVHRTLASLDAFRRQGCPGRRKRGQDARGEGAVVDCRVRYDDGLTGQGGMALMQAWLGMDWIYEAQGPGDLGARLAAATAMADGGEEGVGSVVVVGSDCPFLRPRHLRAAIRALSDTQEGGGEEEEEEGGHDLVLGPATDGGYWLVGLRRPCPALFRDVDWGTSRVLNQTLARAESLGLKVKLLEALSDMDRPQDLALWRPPPL 378
            +AT SL     +FT+YP PG+ KTR+IPALG EGA  L R++   TL  +            K  Q  R    ++   V +  G T      LMQ WLG D  Y+ QG GDLG+R+  A A A+  EEG  SVV++G+DCP L+P+ +  A + LS               HDLVLGPA DGGY+L+GLRR  P LF  ++WGTS VL QT+   + L L +  L  L+D+DRP+DL++     L
Sbjct:    8 AATESLI----IFTRYPEPGKTKTRLIPALGAEGAANLGRKMTEHTLNQV------------KELQSLR----LIAVAVYFAGGNT-----QLMQQWLGSDLRYQCQGEGDLGSRM--ALAFANAFEEGSKSVVIIGTDCPSLKPKLMEDAFKTLSQ--------------HDLVLGPAQDGGYYLIGLRRFIPELFTGINWGTSSVLQQTVTIGKQLDLALAYLPTLADVDRPEDLSVLHQTNL 211          
BLAST of EWM20974.1 vs. NCBI_GenBank
Match: gi|1121311299|ref|WP_073622443.1| (hypothetical protein [Calothrix sp. HK-06] >gi|1115279884|gb|OKH43126.1| hypothetical protein NIES2101_31420 [Calothrix sp. HK-06])

HSP 1 Score: 170.244 bits (430), Expect = 2.047e-47
Identity = 94/233 (40.34%), Postives = 127/233 (54.51%), Query Frame = 0
Query:  142 RVYLFTKYPVPGQVKTRMIPALGREGAMRLHRRLVHRTLASLDAFRRQGCPGRRKRGQDARGEGAVVDCRVRYDDGLTGQGGMALMQAWLGMDWIYEAQGPGDLGARLAAATAMADGGEEGVGSVVVVGSDCPFLRPRHLRAAIRALSDTQEGGGEEEEEEGGHDLVLGPATDGGYWLVGLRRPCPALFRDVDWGTSRVLNQTLARAESLGLKVKLLEALSDMDRPQDLALWR 374
             + LFT+YP P + KTR+IP LG +GA  LHR +   TL+ +                        V   VR+       G + LMQAWLG   +Y+ QG GDLG R+  A A  D  +EG    +++GSDCP +  + L  A   L+D               DLVLGPA DGGY+L+GLRRP P LF++++WGTS VL QT+  A +LGL  + L  L+D+DRP+DL +W 
Sbjct:    3 HLILFTRYPEPNRTKTRLIPKLGADGAANLHREMTEHTLSQVLPLN--------------------VSMEVRF-----AGGSLGLMQAWLGSGLVYQPQGEGDLGERM--ARAFHDSFKEGACKTIIIGSDCPGIDAQILTTAFAHLNDV--------------DLVLGPALDGGYYLIGLRRPIPDLFKNINWGTSEVLQQTINVAHTLGLSFQCLAPLADVDRPEDLEVWH 194          
BLAST of EWM20974.1 vs. NCBI_GenBank
Match: gi|515888549|ref|WP_017319132.1| (hypothetical protein [Mastigocladopsis repens])

HSP 1 Score: 170.244 bits (430), Expect = 2.197e-47
Identity = 88/233 (37.77%), Postives = 130/233 (55.79%), Query Frame = 0
Query:  142 RVYLFTKYPVPGQVKTRMIPALGREGAMRLHRRLVHRTLASLDAFRRQGCPGRRKRGQDARGEGAVVDCRVRYDDGLTGQGGMALMQAWLGMDWIYEAQGPGDLGARLAAATAMADGGEEGVGSVVVVGSDCPFLRPRHLRAAIRALSDTQEGGGEEEEEEGGHDLVLGPATDGGYWLVGLRRPCPALFRDVDWGTSRVLNQTLARAESLGLKVKLLEALSDMDRPQDLALWR 374
             + +FT+YP PG+ KTR+IPALG EGA  L R++   TL  +   +                  + +   VR+       G + LMQ WLG + +Y  QG GDLG+R+A +    +  + G   V+++G+DCP +    L  A   L  +              +LVLGPA DGGY+L+GL+RP P LF ++DWGTS+VL QT+  A++L L V  L +L+D+DRP+DL +W+
Sbjct:   11 HLIIFTRYPKPGETKTRLIPALGTEGAANLQRQMTEHTLFQVKQLQ----------------SSSAISFEVRF-----AGGNLQLMQDWLGYELVYRPQGEGDLGSRMAQS--FFNAFQAGAEKVIIIGTDCPGVNVEILGKAFEQLQHS--------------NLVLGPAVDGGYYLIGLQRPVPELFINIDWGTSQVLQQTIDIAQTLNLSVAYLASLADIDRPEDLPIWK 206          
BLAST of EWM20974.1 vs. NCBI_GenBank
Match: gi|1210206711|dbj|BAZ25752.1| (hypothetical protein NIES4073_66580 [Scytonema sp. NIES-4073])

HSP 1 Score: 169.474 bits (428), Expect = 3.569e-47
Identity = 90/233 (38.63%), Postives = 130/233 (55.79%), Query Frame = 0
Query:  142 RVYLFTKYPVPGQVKTRMIPALGREGAMRLHRRLVHRTLASLDAFRRQGCPGRRKRGQDARGEGAVVDCRVRYDDGLTGQGGMALMQAWLGMDWIYEAQGPGDLGARLAAATAMADGGEEGVGSVVVVGSDCPFLRPRHLRAAIRALSDTQEGGGEEEEEEGGHDLVLGPATDGGYWLVGLRRPCPALFRDVDWGTSRVLNQTLARAESLGLKVKLLEALSDMDRPQDLALWR 374
             + +FT+YP PG+ KTR+IPALG EGA  L R++   TL+ +   ++                 + +   VR+       G + LMQ WLG D  Y+ QG GDLG+R+A +    +  + G   V+ +G+DCP +  + L  A + L                 DLVLGPA DGGY+L+GL+RP P LF ++DWGTS+VL QT+  A++L L V  L  L+D+DRP+DL +W 
Sbjct:   14 HLIIFTRYPEPGKTKTRLIPALGTEGAANLQRQMTEHTLSQVKQLQK----------------TSAISFEVRF-----AGGHLQLMQDWLGYDIAYQPQGEGDLGSRMAQS--FYNAFQSGAEKVLTIGTDCPDVNDQILAEAFKQLQQC--------------DLVLGPAVDGGYYLIGLQRPVPELFINIDWGTSQVLQQTIDTAQTLNLLVDYLPLLADIDRPEDLPIWE 209          
BLAST of EWM20974.1 vs. NCBI_GenBank
Match: gi|1062966542|ref|WP_069350009.1| (hypothetical protein [Scytonema millei] >gi|1061901845|gb|ODN57678.1| hypothetical protein QH73_010355 [Scytonema millei VB511283])

HSP 1 Score: 167.933 bits (424), Expect = 1.722e-46
Identity = 90/233 (38.63%), Postives = 125/233 (53.65%), Query Frame = 0
Query:  142 RVYLFTKYPVPGQVKTRMIPALGREGAMRLHRRLVHRTLASLDAFRRQGCPGRRKRGQDARGEGAVVDCRVRYDDGLTGQGGMALMQAWLGMDWIYEAQGPGDLGARLAAATAMADGGEEGVGSVVVVGSDCPFLRPRHLRAAIRALSDTQEGGGEEEEEEGGHDLVLGPATDGGYWLVGLRRPCPALFRDVDWGTSRVLNQTLARAESLGLKVKLLEALSDMDRPQDLALWR 374
             + +FT+YP PG+ KTR+IPALG EGA  L R++   TL+ +   ++                 + +   VRY       G + LMQ WLG D +Y  QG GDLG+R+  +    +  E G   V+ +G+DCP    + L  A   L                 DLVLGPA DGGY+L+GL+RP P LF  +DWGTS+V  QT+  A++L L V  L  L+D+DRP+DL +W 
Sbjct:   11 HLIIFTRYPEPGKTKTRLIPALGTEGAANLQRQMTEYTLSQVKQLQK----------------TSAISFEVRY-----AGGDLQLMQDWLGYDLVYRPQGEGDLGSRMTQS--FLNAFESGAEKVITIGTDCPDANAQILTQAFEKLQQC--------------DLVLGPAVDGGYYLIGLQRPVPELFISIDWGTSQVFQQTINIAQTLNLLVADLPFLADIDRPEDLPIWE 206          
BLAST of EWM20974.1 vs. NCBI_GenBank
Match: gi|504930581|ref|WP_015117683.1| (hypothetical protein [Rivularia sp. PCC 7116] >gi|427370151|gb|AFY54107.1| hypothetical protein Riv7116_1547 [Rivularia sp. PCC 7116])

HSP 1 Score: 167.933 bits (424), Expect = 1.884e-46
Identity = 87/240 (36.25%), Postives = 133/240 (55.42%), Query Frame = 0
Query:  136 TPSLAPR-VYLFTKYPVPGQVKTRMIPALGREGAMRLHRRLVHRTLASLDAFRRQGCPGRRKRGQDARGEGAVVDCRVRYDDGLTGQGGMALMQAWLGMDWIYEAQGPGDLGARLAAATAMADGGEEGVGSVVVVGSDCPFLRPRHLRAAIRALSDTQEGGGEEEEEEGGHDLVLGPATDGGYWLVGLRRPCPALFRDVDWGTSRVLNQTLARAESLGLKVKLLEALSDMDRPQDLALWR 374
            +P +A + + +FT+YP PG+ KTR+IPALG EGA  L R++   TL+ +  F+                E A +   +R+ DG      + LMQ WLG +  Y+ QG GDLG R+    +  +   +G   V ++G DCP +  + L  A + + ++              DL+LGPA DGGY+L+ L+R    LF ++DWGT++VL QT+  A+ L L V  L  L+D+DRP+DL +W+
Sbjct:    4 SPKIAKQHLIIFTRYPQPGKTKTRLIPALGAEGAANLQRQMTEYTLSKVKKFQ----------------ESAAISFEIRFADG-----NLQLMQNWLGTELNYQLQGEGDLGKRME--NSFMNAFNQGAQEVAIIGIDCPGVNNQVLTEAFQKIQNS--------------DLLLGPAVDGGYYLIALKRAIGQLFTNIDWGTAKVLQQTVDIAQQLNLSVAYLPTLADVDRPEDLPIWQ 206          
BLAST of EWM20974.1 vs. NCBI_GenBank
Match: gi|1121323409|ref|WP_073633520.1| (hypothetical protein [Scytonema sp. HK-05] >gi|1115293915|gb|OKH56937.1| hypothetical protein NIES2130_22445 [Scytonema sp. HK-05] >gi|1210126560|dbj|BAY45674.1| hypothetical protein SAMD00079811_32810 [Scytonema sp. HK-05])

HSP 1 Score: 166.777 bits (421), Expect = 4.216e-46
Identity = 89/233 (38.20%), Postives = 128/233 (54.94%), Query Frame = 0
Query:  142 RVYLFTKYPVPGQVKTRMIPALGREGAMRLHRRLVHRTLASLDAFRRQGCPGRRKRGQDARGEGAVVDCRVRYDDGLTGQGGMALMQAWLGMDWIYEAQGPGDLGARLAAATAMADGGEEGVGSVVVVGSDCPFLRPRHLRAAIRALSDTQEGGGEEEEEEGGHDLVLGPATDGGYWLVGLRRPCPALFRDVDWGTSRVLNQTLARAESLGLKVKLLEALSDMDRPQDLALWR 374
             + +FT+YP PG+ KTR+IPALG EGA  L R++   TL+ +   ++                 + +   VR+       G + LMQ WLG D  Y+ QG GDLG+R+A +    +  + G   V+ +G+DCP +  + L  A   L                 DLVLGPA DGGY+L+GL+R  P LF ++DWGTS+VL QT+  A++L L V  L  L+D+DRP+DL +W 
Sbjct:   11 HLIIFTRYPEPGKTKTRLIPALGTEGAANLQRQMTEHTLSQVKQLQK----------------TSAISFEVRF-----AGGHLQLMQDWLGYDIAYQPQGEGDLGSRMAQS--FYNAFQSGAEKVLTIGTDCPDVNDQILAEAFEQLQQC--------------DLVLGPAVDGGYYLIGLQRSVPELFINIDWGTSQVLQQTIDTAQTLNLLVNYLPLLADIDRPEDLPIWE 206          
The following BLAST results are available for this feature:
BLAST of EWM20974.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100960|gb|EWM20974.1|0.000e+0100.00Protein of unknown function DUF2064 [Nannochlorops... [more]
gi|751567058|ref|WP_041035956.1|6.574e-5039.06hypothetical protein [Tolypothrix campylonemoides]... [more]
gi|889970808|ref|WP_048868958.1|6.833e-4939.48hypothetical protein [Scytonema tolypothrichoides]... [more]
gi|505015446|ref|WP_015202548.1|2.162e-4842.04hypothetical protein [Crinalium epipsammum] >gi|42... [more]
gi|1121311299|ref|WP_073622443.1|2.047e-4740.34hypothetical protein [Calothrix sp. HK-06] >gi|111... [more]
gi|515888549|ref|WP_017319132.1|2.197e-4737.77hypothetical protein [Mastigocladopsis repens][more]
gi|1210206711|dbj|BAZ25752.1|3.569e-4738.63hypothetical protein NIES4073_66580 [Scytonema sp.... [more]
gi|1062966542|ref|WP_069350009.1|1.722e-4638.63hypothetical protein [Scytonema millei] >gi|106190... [more]
gi|504930581|ref|WP_015117683.1|1.884e-4636.25hypothetical protein [Rivularia sp. PCC 7116] >gi|... [more]
gi|1121323409|ref|WP_073633520.1|4.216e-4638.20hypothetical protein [Scytonema sp. HK-05] >gi|111... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9727rna9727Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications