rna9637, rna9637 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9637
Unique Name	rna9637
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1159
Alignment location	KK037255.1:32240..32707 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_102839g1.1027.mrna
Orig protein id	gnl\|cribi\|Naga_102839g1.1027
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037255.1	supercontig	KK037255.1:32240..32707 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_102839g1	gene9357	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21067.1	cds9606	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9637	rna9637-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037255.1:32240..32707-
coding sequence from alignment at KK037255.1:32240..32707-

mRNA sequence

>rna9637 ID=rna9637|Name=rna9637|organism=Nannochloropsis gaditana|type=mRNA|length=1159bp
CCACAGAGGAAGTGCGCTGGAATTCCATGCGGTCCACTGCGGACGGGATA
AGAAAAAGGCGATGGCCGGGAGAGCACCGCCTTTTCTTTCTGACCCTAGT
CAACATCCTGACCATGTCACGGGCCTTTTATTTCGCCCGGCCGCAGTCTT
GGTGCCCATCGAGTACCGGGCCCGCATCCAATATCCAAAGAGCACCTTTC
TTTCTCGAGCTTCGACCCAGCTCGGCGTGGTGTGATCCCTTTCTTCCATT
CGCCCGCGGAGGACCTTCTCGAGCTGGCACAGTGGAGGCCCCTCCCTCTC
CCCCTCCCCAGCCCTCCCGCCGCCCGCCTCGGCGTACCTTCGAAGCATGG
ACATGGAGAGGTCACCGAATAAACTACCGAGTGGAGGGCGATGCGGAGGC
TCCCCCAATCCTTTTGATTCACGGTTTTGGCGCGTCCGTCGGCCATTTTC
GGAACCAATTCAGAGACCTGCCGCCGTTGGGGTACCGGGTGTTTGCCGTG
GACCTCCTAGGCTTCGGCGGGAGCGATAAAGTCAAGGCAGGGGTCGACTA
CGAACTGGAGCTGTGGCGAGACCTCTTGGTGGACTTCATGCAGGAAATGG
AAGCGCGCGGCACAGCCTCCACCACGCACGGATGGACCGTGGGCGGGAAC
AGCATTGGCGGGCTCTTGACCCTGATGGTGGCGGTGGCCCGAGGAGCGGA
GACAGTGAAGGGCTGTGTGCTTTTTAACTGTGCAGGGGGGCTGACGAGTT
TCCGGGAGGAGGAATTGCCCTGGATCCTGCGCCCGCTGTGGATTTTTGTC
CGCGTCGTTTTGTTTGGGGACATTTTTGGCCCGGGACTCTTCCAGCGGTT
TCGGACGGAGGAGAACGTCCGCTCGGTCTTGGCTCAGGTGTACGGGAACG
AAACTGCGGTCGACGACGAACTGGTGGATGTGCTGCTCACGCCCGGGCTG
GACGATGGGGCGGAGGAAGTTTTCCTCAAGGTCCTTCGGGCGCCCGCAGG
ACCTTCCCCAGAAGAATTGCTTCCACAGATCCAGGTGCCCGTCATTGGGA
TTTGGGGGGAAAAGGACCCCTGGACGCCGCTGGCCACTGGTAAGTGATTG
AACACATTAATTTTCCCTGCCCCACCCCGCCCTGAGAGGGCGCAGTCAGT
CACCTCCCC

protein sequence of rna9637

>rna9637-protein ID=rna9637-protein|Name=rna9637|organism=Nannochloropsis gaditana|type=polypeptide|length=82bp
MVMALGMSPVEGLHMYFTTGKHLGDVMCGFDVDLIILPARGREGREEPVR
RLRGRGKNQGQRGDKRREMLPLKSKQTVSRLT

mRNA from alignment at KK037255.1:32240..32707-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9637 ID=rna9637|Name=rna9637|organism=Nannochloropsis gaditana|type=mRNA|length=468bp|location=Sequence derived from alignment at KK037255.1:32240..32707- (Nannochloropsis gaditana)
CCTCCCTCTTTCCCTCCCTCCGCTCTCCCATGGTGATGGCACTCGGCATG
TCTCCAGTGGAAGGTCTTCATATGTATTTTACCACGGGGAAGCATCTAGG
GGATGTGATGTGCGGCTTTGATGTGGATTTGATCATTCTGCCTGCGCGTG
GGAGAGAAGGACGCGAGGAGCCAGTCAGGAGGCTCCGAGGGAGGGGAAAA
AATCAAGGTCAAAGGGGGGACAAAAGGCGGGAAATGCTTCCTTTGAAAAG
CAAGCAAACTGTGTCAAGACTCACTTAGCATATGGATTATCGCTTCTTCT
TTCCCGTGTCTCTGTCGCCGAATCGATCACTTTCCCCCGGCCGATCGCTG
AACTTCCCTCCCTCTTTCCCTCGTAGAAGATCGCTCTGAAGGATGATCCG
CCTCCCTTCCCTCCTTAACACGGCCTCTCCAGCCCCCCCCCCCACCCCTC
CCTCCCTCCCTCCCTCCC

Coding sequence (CDS) from alignment at KK037255.1:32240..32707-

>rna9637 ID=rna9637|Name=rna9637|organism=Nannochloropsis gaditana|type=CDS|length=249bp|location=Sequence derived from alignment at KK037255.1:32240..32707- (Nannochloropsis gaditana)
ATGGTGATGGCACTCGGCATGTCTCCAGTGGAAGGTCTTCATATGTATTT
TACCACGGGGAAGCATCTAGGGGATGTGATGTGCGGCTTTGATGTGGATT
TGATCATTCTGCCTGCGCGTGGGAGAGAAGGACGCGAGGAGCCAGTCAGG
AGGCTCCGAGGGAGGGGAAAAAATCAAGGTCAAAGGGGGGACAAAAGGCG
GGAAATGCTTCCTTTGAAAAGCAAGCAAACTGTGTCAAGACTCACTTAG

Synonyms

Publications