rna9617, rna9617 (mRNA) Nannochloropsis gaditana

Overview
Namerna9617
Unique Namerna9617
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length842
Alignment locationKK037254.1:292517..293067 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102165g1.3766.mrna
Orig protein idgnl|cribi|Naga_102165g1.3766
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:292517..293067 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102165g1gene9336Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9617rna9617-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21087.1cds9586Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9617 ID=rna9617|Name=rna9617|organism=Nannochloropsis gaditana|type=mRNA|length=842bp
TCCCTCCAGGCCCGCGCCTGCAATTTCTGGGATGACAACGCCATTTTCTT
ACCCCTGGAGTCGGACCGCGTGGAGCCCGCCAAATCCATCACCGTCGTCA
TCCGCAACGTGCTCGCCCACGGTCCTCAGACGGGAGGAGCCGCCTCTCGC
GCCTGCGCCAAGGGCCCTGAATGCGGCAACCCCGCCTTCATCCGCAACAT
CATGGGGGACTACTACCCCGAGCTGCAAATCTACAACTGCGACGCTTGCG
AGGGGAGGGAGCCCATCATCACCCAGTACCCGGACTATTTCGGACATTCC
TAGGCCGAGGGCACGGAGAAAAGCGTGGGGGGAGGATTGAGGACGATAGA
GGACTTCAGGGGCATGATGGGATTGGAGGGAAGAGGGAGGGGAGGGGAGG
AGAGGGAAGGAGGACGTCGCTCGCCTTGAAAGACGGGCGCAAGACAGGGC
AGCTTCATTCTGTGAGGATGATAGCGAGATATAGGGTGGAGGAAGCGTTT
TTGGGAGGGAGCGTGGGAGGAGGCTTGTGTGCATGTATCAGTCACGGCCG
CCTCGTAAGTCTCGCGTGTGGGGATAGTCTGGAAAGGGAGGACAAGGTAA
GACAAAGAGGAAGCTGCATTGCTGCTTCGAAATATATTTCAAATTGTACA
CTAACTATTTCACCATATCGGGCCCCGCAGCCTGGAGTGGCCTTCTTTTT
TGTTGGTCTTAACGCATTAATTAGCAAAAGTCCACTGATACTTCCGACAG
AAAAGTCCTTGCAATCGAGTTTTTCCTTTGGCATGTTTGCTTTTGGATAC
CTATCGATCGAAATGCGAAACTTTCACAATACACAACAATGA
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protein sequence of rna9617

>rna9617-protein ID=rna9617-protein|Name=rna9617|organism=Nannochloropsis gaditana|type=polypeptide|length=107bp
MVLFEGSWLPSQVQNLVARQSSDTPYLFYCINPNNNYHLLTSFSLLPSLP
PSSQILELADQNPLPHAQDPLLPVRSFEGGRRGGLRHALLLPHDLGLGLA
PTNHCLR
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mRNA from alignment at KK037254.1:292517..293067-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9617 ID=rna9617|Name=rna9617|organism=Nannochloropsis gaditana|type=mRNA|length=551bp|location=Sequence derived from alignment at KK037254.1:292517..293067- (Nannochloropsis gaditana)
ATGGTCCTCTTCGAGGGCTCTTGGCTGCCCTCCCAGGTCCAAAACCTGGT
GGCGCGTCAATCCTCCGACACTCCCTACCTCTTCTACTGTATCAACCCCA
ACAACAACTACCGTGAGCAGAGGGGGAGAGAGGGAGGGAGGGAGGGAAGG
AGGTGTCCCCGTCGTCCTGTGGTGGAGTTCCGCCCTCACGACTACCCTCT
ACCGCAGATCTCCTCACTTCCTTCTCCCTCCTTCCCTCTCTCCCTCCCTC
CAGCCAAATATTGGAACTCGCTGATCAAAATCCGCTTCCGCATGCCCAAG
ATCCCCTACTCCCTGTACGCTCCTTTGAAGGTAGGAGGGAGGAAGGAAGG
GAGGAAGGAAGGACGGGGGCGTGGTGCCATCGGCAGCAGCTAAGGGCCCG
GTGCTTGCCTCTGAGGGAATAGGCCTTTCAAACCCTCCCTTCCTCCCTCC
CCCCTCCTTCAGGTGGCCGACGAGGAGGCCTACGACATGCGCTACTTCTC
CCTCATGACCTCGGACTCGGTCTTGCCCCAACCAACCATTGCCTCCGTTG
A
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Coding sequence (CDS) from alignment at KK037254.1:292517..293067-

>rna9617 ID=rna9617|Name=rna9617|organism=Nannochloropsis gaditana|type=CDS|length=972bp|location=Sequence derived from alignment at KK037254.1:292517..293067- (Nannochloropsis gaditana)
GTGGCCGACGAGGAGGCCTACGACATGCGCTACTTCTCCCTCATGACCTC
GGACTCGGTCTTGCCCCAACCAACCATTGCCTCCGTTGAATCTCCTCACT
TCCTTCTCCCTCCTTCCCTCTCTCCCTCCCTCCAGCCAAATATTGGAACT
CGCTGATCAAAATCCGCTTCCGCATGCCCAAGATCCCCTACTCCCTGTAC
GCTCCTTTGAAGATGGTCCTCTTCGAGGGCTCTTGGCTGCCCTCCCAGGT
CCAAAACCTGGTGGCGCGTCAATCCTCCGACACTCCCTACCTCTTCTACT
GTATCAACCCCAACAACAACTACCGTGGCCGACGAGGAGGCCTACGACAT
GCGCTACTTCTCCCTCATGACCTCGGACTCGGTCTTGCCCCAACCAACCA
TTGCCTCCGTTGAATCTCCTCACTTCCTTCTCCCTCCTTCCCTCTCTCCC
TCCCTCCAGCCAAATATTGGAACTCGCTGATCAAAATCCGCTTCCGCATG
CCCAAGATCCCCTACTCCCTGTACGCTCCTTTGAAGATGGTCCTCTTCGA
GGGCTCTTGGCTGCCCTCCCAGGTCCAAAACCTGGTGGCGCGTCAATCCT
CCGACACTCCCTACCTCTTCTACTGTATCAACCCCAACAACAACTACCGT
GGCCGACGAGGAGGCCTACGACATGCGCTACTTCTCCCTCATGACCTCGG
ACTCGGTCTTGCCCCAACCAACCATTGCCTCCGTTGAATCTCCTCACTTC
CTTCTCCCTCCTTCCCTCTCTCCCTCCCTCCAGCCAAATATTGGAACTCG
CTGATCAAAATCCGCTTCCGCATGCCCAAGATCCCCTACTCCCTGTACGC
TCCTTTGAAGATGGTCCTCTTCGAGGGCTCTTGGCTGCCCTCCCAGGTCC
AAAACCTGGTGGCGCGTCAATCCTCCGACACTCCCTACCTCTTCTACTGT
ATCAACCCCAACAACAACTACC
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Synonyms
Publications