EWM21140.1, cds9546 (CDS) Nannochloropsis gaditana

Overview
NameEWM21140.1
Unique Namecds9546
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037254.1:215281..215334 -
Alignment locationKK037254.1:215139..215186 -
Alignment locationKK037254.1:214285..214990 -
Alignment locationKK037254.1:213775..213866 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21140.1
Producteukaryotic translation initiation factor 4e type 2
Orig transcript idgnl|cribi|Naga_100041g17.3710.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:215281..215334 -
KK037254.1supercontigKK037254.1:215139..215186 -
KK037254.1supercontigKK037254.1:214285..214990 -
KK037254.1supercontigKK037254.1:213775..213866 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0003723RNA binding
GO:0003743translation initiation factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: INTERPRO
TermDefinition
IPR001040TIF_eIF_4E
IPR023398TIF_eIF4e-like_dom
Homology
BLAST of EWM21140.1 vs. NCBI_GenBank
Match: gi|585101207|gb|EWM21140.1| (eukaryotic translation initiation factor 4e type 2 [Nannochloropsis gaditana])

HSP 1 Score: 595.119 bits (1533), Expect = 0.000e+0
Identity = 299/299 (100.00%), Postives = 299/299 (100.00%), Query Frame = 0
Query:    1 MAAGVDGIVAGPGVTPLQRGFTFYYTDKHKAAAETNGNSVERVASFRTAEGFWRVYNHMLRPHQLREGEGREYQLFVEGVKPSGEDPSNSKGGRLSVRCPPGLTSRYWEELVIAFVGEQIDGGEDEVCGVIVSPRSSGDVISIWNRHAGNRDFQVKLVRRLKALWELPPFVPMDYARHRPESGQGGGGGTEGGGERKGAWRAARVFGAGGGGGAHGGREGGYSKNLGRDRGERGMFERGERSAEGGGRREAWLSRERAGSADKGEWRSRGNSTGQHHAPSEGKTDAEGWEVVRERRPSR 299
            MAAGVDGIVAGPGVTPLQRGFTFYYTDKHKAAAETNGNSVERVASFRTAEGFWRVYNHMLRPHQLREGEGREYQLFVEGVKPSGEDPSNSKGGRLSVRCPPGLTSRYWEELVIAFVGEQIDGGEDEVCGVIVSPRSSGDVISIWNRHAGNRDFQVKLVRRLKALWELPPFVPMDYARHRPESGQGGGGGTEGGGERKGAWRAARVFGAGGGGGAHGGREGGYSKNLGRDRGERGMFERGERSAEGGGRREAWLSRERAGSADKGEWRSRGNSTGQHHAPSEGKTDAEGWEVVRERRPSR
Sbjct:    1 MAAGVDGIVAGPGVTPLQRGFTFYYTDKHKAAAETNGNSVERVASFRTAEGFWRVYNHMLRPHQLREGEGREYQLFVEGVKPSGEDPSNSKGGRLSVRCPPGLTSRYWEELVIAFVGEQIDGGEDEVCGVIVSPRSSGDVISIWNRHAGNRDFQVKLVRRLKALWELPPFVPMDYARHRPESGQGGGGGTEGGGERKGAWRAARVFGAGGGGGAHGGREGGYSKNLGRDRGERGMFERGERSAEGGGRREAWLSRERAGSADKGEWRSRGNSTGQHHAPSEGKTDAEGWEVVRERRPSR 299          
BLAST of EWM21140.1 vs. NCBI_GenBank
Match: gi|585101208|gb|EWM21141.1| (eukaryotic translation initiation factor 4e type 2 [Nannochloropsis gaditana])

HSP 1 Score: 536.954 bits (1382), Expect = 0.000e+0
Identity = 270/272 (99.26%), Postives = 271/272 (99.63%), Query Frame = 0
Query:    1 MAAGVDGIVAGPGVTPLQRGFTFYYTDKHKAAAETNGNSVERVASFRTAEGFWRVYNHMLRPHQLREGEGREYQLFVEGVKPSGEDPSNSKGGRLSVRCPPGLTSRYWEELVIAFVGEQIDGGEDEVCGVIVSPRSSGDVISIWNRHAGNRDFQVKLVRRLKALWELPPFVPMDYARHRPESGQGGGGGTEGGGERKGAWRAARVFGAGGGGGAHGGREGGYSKNLGRDRGERGMFERGERSAEGGGRREAWLSRERAGSADKGEWRSRGNS 272
            MAAGVDGIVAGPGVTPLQRGFTFYYTDKHKAAAETNGNSVERVASFRTAEGFWRVYNHMLRPHQLREGEGREYQLFVEGVKPSGEDPSNSKGGRLSVRCPPGLTSRYWEELVIAFVGEQIDGGEDEVCGVIVSPRSSGDVISIWNRHAGNRDFQVKLVRRLKALWELPPFVPMDYARHRPESGQGGGGGTEGGGERKGAWRAARVFGAGGGGGAHGGREGGYSKNLGRDRGERGMFERGERSAEGGGRREAWLSRERAGSADKGEWRSRG +
Sbjct:    1 MAAGVDGIVAGPGVTPLQRGFTFYYTDKHKAAAETNGNSVERVASFRTAEGFWRVYNHMLRPHQLREGEGREYQLFVEGVKPSGEDPSNSKGGRLSVRCPPGLTSRYWEELVIAFVGEQIDGGEDEVCGVIVSPRSSGDVISIWNRHAGNRDFQVKLVRRLKALWELPPFVPMDYARHRPESGQGGGGGTEGGGERKGAWRAARVFGAGGGGGAHGGREGGYSKNLGRDRGERGMFERGERSAEGGGRREAWLSRERAGSADKGEWRSRGEA 272          
BLAST of EWM21140.1 vs. NCBI_GenBank
Match: gi|970644937|gb|KUF85584.1| (Eukaryotic translation initiation factor 4E type 2 [Phytophthora nicotianae])

HSP 1 Score: 157.918 bits (398), Expect = 3.854e-43
Identity = 83/245 (33.88%), Postives = 134/245 (54.69%), Query Frame = 0
Query:   11 GPGVTPLQRGFTFYYTDK---HKAAAETNGNSVERVASFRTAEGFWRVYNHMLRPHQLREGEGREYQLFVEGVKPSGEDPSNSKGGRLSVRCPPGLTSRYWEELVIAFVGEQIDGGEDEVCGVIVSPRSSGDVISIWNRHAGNRDFQVKLVRRLKALWELPPFVPMDYARHRPESGQGGGGGTEGGGERKGAWRAARVFGAGGGGGAHGGREGGYSKNLGRDRGERGMFERGERSAEGGGRREAW 252
            G   TP+Q  ++F+Y  +   +KA +E+   S++ +  F+T + FWR+YNH++RP+ L      +Y LF  G+KP  EDP+N +GG+  VR   G+ SRYWE+LV+A +GEQ D G +E+CG ++S R + D+IS+WNR+A N +   ++   ++ +  LP FV ++Y RH                     WR+ +  G    G + G R    S+           + RG++S+  G +R AW
Sbjct:   11 GATETPIQNMYSFWYIKRSTGNKAVSESYEKSIKGLGDFKTVQDFWRIYNHLVRPNDL--PNTMDYHLFKTGIKPMWEDPANRRGGKWMVRLRKGIASRYWEDLVLAIIGEQFDVG-NEICGAVISIRYNEDIISLWNRNADNNEACYRIRDTMRKVLNLPQFVALEYKRHDTSLNDN------SSFRNTTLWRSDKNDGNSREGSSSGDRTSSGSR-----------YSRGDKSS--GHQRSAW 233          
BLAST of EWM21140.1 vs. NCBI_GenBank
Match: gi|675179729|ref|XP_008898749.1| (hypothetical protein PPTG_06554 [Phytophthora parasitica INRA-310] >gi|566008234|gb|ETI31145.1| hypothetical protein F443_21861 [Phytophthora parasitica P1569] >gi|567945716|gb|ETK71527.1| hypothetical protein L915_21254 [Phytophthora parasitica] >gi|567974376|gb|ETL24971.1| hypothetical protein L916_21121 [Phytophthora parasitica] >gi|568003845|gb|ETL78186.1| hypothetical protein L917_20979 [Phytophthora parasitica] >gi|568033755|gb|ETM31449.1| hypothetical protein L914_20996 [Phytophthora parasitica] >gi|568101735|gb|ETN16421.1| hypothetical protein PPTG_06554 [Phytophthora parasitica INRA-310] >gi|570311912|gb|ETO59860.1| hypothetical protein F444_21883 [Phytophthora parasitica P1976] >gi|570935707|gb|ETP00964.1| hypothetical protein F441_21743 [Phytophthora parasitica CJ01A1] >gi|570965981|gb|ETP29100.1| hypothetical protein F442_21721 [Phytophthora parasitica P10297])

HSP 1 Score: 157.918 bits (398), Expect = 3.922e-43
Identity = 83/245 (33.88%), Postives = 134/245 (54.69%), Query Frame = 0
Query:   11 GPGVTPLQRGFTFYYTDK---HKAAAETNGNSVERVASFRTAEGFWRVYNHMLRPHQLREGEGREYQLFVEGVKPSGEDPSNSKGGRLSVRCPPGLTSRYWEELVIAFVGEQIDGGEDEVCGVIVSPRSSGDVISIWNRHAGNRDFQVKLVRRLKALWELPPFVPMDYARHRPESGQGGGGGTEGGGERKGAWRAARVFGAGGGGGAHGGREGGYSKNLGRDRGERGMFERGERSAEGGGRREAW 252
            G   TP+Q  ++F+Y  +   +KA +E+   S++ +  F+T + FWR+YNH++RP+ L      +Y LF  G+KP  EDP+N +GG+  VR   G+ SRYWE+LV+A +GEQ D G +E+CG ++S R + D+IS+WNR+A N +   ++   ++ +  LP FV ++Y RH                     WR+ +  G    G + G R    S+           + RG++S+  G +R AW
Sbjct:   16 GATETPIQNMYSFWYIKRSTGNKAVSESYEKSIKGLGDFKTVQDFWRIYNHLVRPNDL--PNTMDYHLFKTGIKPMWEDPANRRGGKWMVRLRKGIASRYWEDLVLAIIGEQFDVG-NEICGAVISIRYNEDIISLWNRNADNNEACYRIRDTMRKVLNLPQFVALEYKRHDTSLNDN------SSFRNTTLWRSDKNDGNSREGSSSGDRTSSGSR-----------YSRGDKSS--GHQRSAW 238          
BLAST of EWM21140.1 vs. NCBI_GenBank
Match: gi|698809154|ref|XP_009837606.1| (hypothetical protein H257_12178 [Aphanomyces astaci] >gi|574107307|gb|ETV72820.1| hypothetical protein H257_12178 [Aphanomyces astaci])

HSP 1 Score: 157.918 bits (398), Expect = 1.101e-42
Identity = 73/174 (41.95%), Postives = 110/174 (63.22%), Query Frame = 0
Query:    9 VAGPGVTPLQRGFTFYYTDKHKAAA----ETNGNSVERVASFRTAEGFWRVYNHMLRPHQLREGEGREYQLFVEGVKPSGEDPSNSKGGRLSVRCPPGLTSRYWEELVIAFVGEQIDGGEDEVCGVIVSPRSSGDVISIWNRHAGNRDFQVKLVRRLKALWELPPFVPMDYARH 178
            V   G  P+Q  +TF+Y  K+   A    E+   S++ ++ FRT +GFWRVYNH++RP+ L      +Y LF  G+KP  ED +N +GG+  +R   G+ SRYWE+LV+A VGEQ D G +E+CG ++S R + D+IS+WNR+A N +   ++   ++ L  LP FV ++Y RH
Sbjct:   12 VDTAGEVPIQNTYTFWYMKKNSGKALEDQESYEKSIKEISEFRTVQGFWRVYNHLIRPNDL--PNTTDYHLFKAGIKPMWEDTANRRGGKWMIRIRKGIASRYWEDLVLAIVGEQFDVG-NEICGAVMSIRYNEDIISLWNRNADNSEACYRIRDTMRKLLNLPQFVSLEYKRH 182          
BLAST of EWM21140.1 vs. NCBI_GenBank
Match: gi|301118230|ref|XP_002906843.1| (eukaryotic initiation factor 4E, putative [Phytophthora infestans T30-4] >gi|262108192|gb|EEY66244.1| eukaryotic initiation factor 4E, putative [Phytophthora infestans T30-4])

HSP 1 Score: 156.762 bits (395), Expect = 1.356e-42
Identity = 95/285 (33.33%), Postives = 150/285 (52.63%), Query Frame = 0
Query:    6 DGIVAGPGVT--PLQRGFTFYYTDK---HKAAAETNGNSVERVASFRTAEGFWRVYNHMLRPHQLREGEGREYQLFVEGVKPSGEDPSNSKGGRLSVRCPPGLTSRYWEELVIAFVGEQIDGGEDEVCGVIVSPRSSGDVISIWNRHAGNRDFQVKLVRRLKALWELPPFVPMDYARHRPESGQGGGGGTEGGGERKGAWRAARVFGAGGGGGAHGGREGGYSKNLGRDRGERGMFERGERSAEGGGRREAWLSRERAGSADKGEWRSRGNSTGQHHAPSEGKTD 285
            +G VA  G T  P+Q  +TF+Y  +   +KA +E+   S++ +  F+T + FW++YNH++RP+ L      +Y LF  G+KP  ED +N +GG+  VR   G+ SRYWE+LV+A +GEQ D G +E+CG ++S R + D+IS+WNR+A N +   ++   ++ +  LP FV ++Y RH                     WR+ +  G    G + G R    S+           + RG++S+  G +R +W SR+   S  K +  S  NS   HH  S    D
Sbjct:   11 EGKVAEKGTTETPIQNMYTFWYIKRSTGNKAVSESYEKSIKGLGDFKTVQDFWKIYNHLVRPNDL--PNTMDYHLFKTGIKPMWEDSANRRGGKWMVRLRKGIASRYWEDLVLAIIGEQFDVG-NEICGAVISIRYNEDIISLWNRNADNNEACYRIRDTMRKVLNLPQFVALEYKRHDTSLNDN------SSFRNTTLWRSEKNDGTSREGSSGGDRTSSGSR-----------YSRGDKSS--GHQRSSW-SRDNKRSFHKSD--SNDNS---HHRNSRTNDD 267          
BLAST of EWM21140.1 vs. NCBI_GenBank
Match: gi|673038358|ref|XP_008873140.1| (hypothetical protein H310_08979 [Aphanomyces invadans] >gi|574471257|gb|ETV98265.1| hypothetical protein H310_08979 [Aphanomyces invadans])

HSP 1 Score: 157.147 bits (396), Expect = 1.702e-42
Identity = 70/172 (40.70%), Postives = 109/172 (63.37%), Query Frame = 0
Query:   11 GPGVTPLQRGFTFYYTDKHKAAA----ETNGNSVERVASFRTAEGFWRVYNHMLRPHQLREGEGREYQLFVEGVKPSGEDPSNSKGGRLSVRCPPGLTSRYWEELVIAFVGEQIDGGEDEVCGVIVSPRSSGDVISIWNRHAGNRDFQVKLVRRLKALWELPPFVPMDYARH 178
              G +P+Q  +TF+Y  K+   A    E+   S++ +A FRT +GFWRVYNH++RP+ L      +Y LF  G+KP  ED +N +GG+  +R   G+ SRYWE+LV+A +GEQ D G +E+CG ++S R + D+IS+WNR+A N +   ++   ++ +  LP F  ++Y RH
Sbjct:   13 ATGESPIQNTYTFWYMKKNSGKALEDQESYEKSIKEIAEFRTVQGFWRVYNHLIRPNDL--PNTTDYHLFKAGIKPMWEDSANRRGGKWMIRIRKGIASRYWEDLVLAIIGEQFDVG-NEICGAVMSIRYNEDIISLWNRNADNNEACYRIRDTMRKVLNLPQFASLEYKRH 181          
BLAST of EWM21140.1 vs. NCBI_GenBank
Match: gi|695377309|ref|XP_009515981.1| (hypothetical protein PHYSODRAFT_309469 [Phytophthora sojae] >gi|348688892|gb|EGZ28706.1| hypothetical protein PHYSODRAFT_309469 [Phytophthora sojae])

HSP 1 Score: 155.606 bits (392), Expect = 3.383e-42
Identity = 68/171 (39.77%), Postives = 111/171 (64.91%), Query Frame = 0
Query:   11 GPGVTPLQRGFTFYYTDK---HKAAAETNGNSVERVASFRTAEGFWRVYNHMLRPHQLREGEGREYQLFVEGVKPSGEDPSNSKGGRLSVRCPPGLTSRYWEELVIAFVGEQIDGGEDEVCGVIVSPRSSGDVISIWNRHAGNRDFQVKLVRRLKALWELPPFVPMDYARH 178
            G   TP+Q  ++F+Y  +   +KA +E+   S++ +  F+T + FW++YNH++RP+ L      +Y LF  G+KP  EDP+N +GG+  VR   G+ SRYWE+LV+A +GEQ D G +E+CG ++S R + D+IS+WNR+A N +   ++   ++ +  LP FV ++Y RH
Sbjct:   12 GSAETPIQNMYSFWYIKRSTGNKAVSESYEKSIKGLGDFKTVQDFWKIYNHLVRPNDL--PNTMDYHLFKTGIKPMWEDPANRRGGKWMVRLRKGIASRYWEDLVLAIIGEQFDVG-NEICGAVISIRYNEDIISLWNRNADNNEACYRIRDTMRKVLNLPQFVALEYKRH 179          
BLAST of EWM21140.1 vs. NCBI_GenBank
Match: gi|325180224|emb|CCA14627.1| (eukaryotic initiation factor 4E putative [Albugo laibachii Nc14])

HSP 1 Score: 155.606 bits (392), Expect = 4.533e-42
Identity = 70/174 (40.23%), Postives = 110/174 (63.22%), Query Frame = 0
Query:    6 DGIVAGPGVTPLQRGFTFYYTDKHKA-AAETNGNSVERVASFRTAEGFWRVYNHMLRPHQLREGEGREYQLFVEGVKPSGEDPSNSKGGRLSVRCPPGLTSRYWEELVIAFVGEQIDGGEDEVCGVIVSPRSSGDVISIWNRHAGNRDFQVKLVRRLKALWELPPFVPMDYARH 178
            D    G    P+Q  +TF+Y  ++ A  AE+   S++ +  F+T +GFW +YNH++RP+ L      +Y LF  G+KP  EDPSN +GG+  VR   G+ SRYWE+L++A +GEQ D G +E+CG ++S R + D+IS+WNR+A N +   ++   ++ +  LP FV ++Y RH
Sbjct:   15 DDDTTGKSDAPIQNMYTFWYMKRNTANKAESYEKSIKELGDFKTVQGFWCIYNHLVRPNDL--PNTMDYHLFKTGIKPMWEDPSNRRGGKWMVRMRKGIASRYWEDLILAIIGEQFDVG-NEICGAVISIRYNEDIISLWNRNADNNEACYRIRDTMRRVLNLPQFVALEYKRH 185          
BLAST of EWM21140.1 vs. NCBI_GenBank
Match: gi|470453563|ref|XP_004340748.1| (Eukaryotic initiation factor 4E [Acanthamoeba castellanii str. Neff] >gi|440797622|gb|ELR18705.1| Eukaryotic initiation factor 4E [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 152.91 bits (385), Expect = 1.476e-41
Identity = 71/172 (41.28%), Postives = 110/172 (63.95%), Query Frame = 0
Query:   13 GVTP-----LQRGFTFYYTDKHKAAAETN-GNSVERVASFRTAEGFWRVYNHMLRPHQLREGEGREYQLFVEGVKPSGEDPSNSKGGRLSVRCPPGLTSRYWEELVIAFVGEQIDGGEDEVCGVIVSPRSSGDVISIWNRHAGNRDFQVKLVRRLKALWELPPFVPMDYARH 178
            GV P     L  G+TF++  +  A ++ N  N+++R+  FR+ EGFW+ YNH++RPH L      +Y LF EG+KP  ED +N +GG+  +R   GL ++YWE+L++A VGEQ   G DE+CG++ S R + D++S+WN+ A N+  ++K+   LK +  LPP  PM+Y  H
Sbjct:   57 GVDPEGGHFLSSGYTFWFVRRSGARSQENYANAIKRIGGFRSIEGFWKYYNHLVRPHDL--PNTSDYHLFKEGIKPMWEDDANKRGGKWIIRLKKGLATKYWEDLLLAIVGEQFQVG-DEICGIVCSIRFNEDILSVWNKSADNKQARLKIHETLKTVLNLPPNTPMEYKCH 225          
The following BLAST results are available for this feature:
BLAST of EWM21140.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101207|gb|EWM21140.1|0.000e+0100.00eukaryotic translation initiation factor 4e type 2... [more]
gi|585101208|gb|EWM21141.1|0.000e+099.26eukaryotic translation initiation factor 4e type 2... [more]
gi|970644937|gb|KUF85584.1|3.854e-4333.88Eukaryotic translation initiation factor 4E type 2... [more]
gi|675179729|ref|XP_008898749.1|3.922e-4333.88hypothetical protein PPTG_06554 [Phytophthora para... [more]
gi|698809154|ref|XP_009837606.1|1.101e-4241.95hypothetical protein H257_12178 [Aphanomyces astac... [more]
gi|301118230|ref|XP_002906843.1|1.356e-4233.33eukaryotic initiation factor 4E, putative [Phytoph... [more]
gi|673038358|ref|XP_008873140.1|1.702e-4240.70hypothetical protein H310_08979 [Aphanomyces invad... [more]
gi|695377309|ref|XP_009515981.1|3.383e-4239.77hypothetical protein PHYSODRAFT_309469 [Phytophtho... [more]
gi|325180224|emb|CCA14627.1|4.533e-4240.23eukaryotic initiation factor 4E putative [Albugo l... [more]
gi|470453563|ref|XP_004340748.1|1.476e-4141.28Eukaryotic initiation factor 4E [Acanthamoeba cast... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9577rna9577Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications