rna9570, rna9570 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9570
Unique Name	rna9570
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1440
Alignment location	KK037254.1:196808..199266 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100041g10.3687.mrna
Orig protein id	gnl\|cribi\|Naga_100041g10.3687
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:196808..199266 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100041g10	gene9291	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9570	rna9570-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21117.1	cds9539	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:196808..199266+
coding sequence from alignment at KK037254.1:196808..199266+

mRNA sequence

>rna9570 ID=rna9570|Name=rna9570|organism=Nannochloropsis gaditana|type=mRNA|length=1440bp
ATGGCTTGTTCGTCGCCACCTCCCAACTCGGCAACTACTTCTGTCGGGTC
TCCTTGCACACACCAAGCCTCTAAAAAAGCACGCTTGCTTCTTCAGGACC
CTGTAGATAAACTTCGTGCCTTACCTACTATTCGAGAGCGATGTCAGCAA
ATTTATGCCGCCGGTCAACGTGGCGAGCTGAAGCATTTCGCGCTGCACGA
AGATAAGATTGGGGAGGTAGTTGACTACGTGCAGTCCGTGATAGAAGAAC
GCTTTCCTGGCGGCATGGACATGGTGCCGAATCACTCACGATACCGTCAT
TTCGAGCCAGGAAATGTGGACCGTCTTAGCCAGCTCCGCAGTGCTTGTAA
AGACGTGGACAAGCGAGAGGTTGCCCGTAGGCTGGTCGACCTCGTTGTGG
TTAGCGTCTTGCTGGACGCGGGGGCCGGAGACAAGTGGAAGTACGTGGAG
AAGGAAACGGGATTGACGATCGATCGGTCAGAGGGTTTGGGTGTGGCCAG
CTTCCGCATGTTCATGGACGGGGCGTTCTCGAGCGATGCGGAGCAGGCGA
AGGGGAAAAGACTGCAGGCAGACGCCGTGGGCCTCCAGGCCCTTACAAGC
CAGCGCGTACGTGAGGGCTTTCAAGTCAAGGAAGACAGCAACCCTTTGGT
GGGTACAGAGGGCCGGGCCGCCTTGTTGCGACGGCTGGGGAAGGCGTTGG
AGGAACACCCGGAGTTCTTCTCGTCGAGACTAGCAAGTAAGGGGGCGGAC
GAGGACGGGGGGGCGGAGATCTTCCGTCCGGGCTACCTTGTCGACTACCT
CTTTGCCCAAGCCAATCCAGGAACGGATCCCGCCTCAGTGCCGGTACACG
ACCTGTGGCGCGTGGTCATGGACGGGCTGGAGTCCATATGGCCGGCGGGT
CGAACGTCGGTGGGGGGCCGGCCAATGGGGGACGTGTGGCCTCACAGTGC
CCTGGCCCTGGGGGGTAAGGTTGCCGAGGAGGGGGACGGCGGGCTGGGCG
AGGAAAAGGAAGCCGGCGCTTGCCTGGTCCCATTCCACAAGCTGTCCCAG
TGGCTGACGTACTCCCTAATGGAGCCCCTGGCCGAGGCCGGGCTGGCACT
GACGGAGACGAGGCACATGACGGGCCTCCCGGAGTACCGGAACGGCGGGC
TATTTGTGGACCTGGGCGTGCTCGAGGCGAAGAGACCGGAGCTGCTGGAC
CCTGCCGGGCATGCGCCGGGGTCGGAGGTGATCGTAGAGTGGCGGGCCCT
GACTGTGGTGCTGCTGGACGAGGTGGCCCGGCGGCTGCGGGAAAAGTTGG
GGGCCTCGGAGAAGAGCTTGCCCCTGGTGAAGGTCCTAGAGGGGGGGACA
TGGACGGCGGGGAGGAAGATAGCCAGAGAAAAGAGGCCAGACTCATGCGG
GCCCCCCATTGTGATCGTCAGTGACGGAACCGTGTTTTAA

protein sequence of rna9570

>rna9570-protein ID=rna9570-protein|Name=rna9570|organism=Nannochloropsis gaditana|type=polypeptide|length=458bp
MSGAAQLQYVVGGHDADGKRDGMLRAKNTPQGVATCIASINLATTELLNV
QGKVHAMQGLRACIRDEEGVSGGTAGLLGGPLDNGPLASMATTVVSCTLH
GADGNGRPSNRIRVFFYDKWAEEIGDCLENNCLLSLTGPGEMVRAVPTGD
HGCALVVAPPVLLGASHTNTPRIKLVLTHEKGPELTLDLELDQNTLDARA
EAYKLACGGRRGSAGVQGHVQNVGVGAWLRVRGLTIGPAGRGEGGDGEEK
LWAGMNASLISMPAKSFEVHRVAVRFLQRLRMHQRRLAAQALLNQTAKCM
RLFESPPPRTRKHGSQHPLAYVVEALGSSTPTIFALRVKIVGWWPQDLQR
FCVEDDGKWRFLFTLRLEDVTGALDAVVFGDVAEWFFVDRGLRPTDLAGE
GAETRASLQAIGEAMEEFKRQGYFDFVVKSYLTRGDRGREGKMRGRMVKR
FRLLKPAG

mRNA from alignment at KK037254.1:196808..199266+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9570 ID=rna9570|Name=rna9570|organism=Nannochloropsis gaditana|type=mRNA|length=2459bp|location=Sequence derived from alignment at KK037254.1:196808..199266+ (Nannochloropsis gaditana)
ATGTCTGGCGCTGCACAACTCCAGTACGTAGTCGGTGGCCATGACGCAGA
TGGCAAACGGGATGGTATGCTCCGTGCAAAAAACACTCCTCAAGGCGTCG
CAACCTGTATAGCATCAATAAATCTTGCCACCACAGAGCTTCTTAATGTT
CAGGGGAAAGTACATGCCATGCAAGGACTGCGGGCGTGTATtcgggacga
ggaaggcgtgaGCGGGGGTACCGCAGGACTTTTAGGAGGGCCGCTCGACA
ACGGACCTCTGGCCTCCATGGCAACGACAGTAGTCAGCTGCACCTTGCAC
GGGGCAGATGGAAATGGGAGGCCCAGTAATCGCATTCGTGTGTTCTTCTA
CGATAAGTGGGCGGAAGAGATCGGAGACTGCCTCGAAAACAATTGCCTGC
TCTCTCTCACAGGGCCTGGCGAGATGGTCCGGGCGGTGCCAACGGGGGAT
CACGGCTGTGCCTTAGTTGTCGCCCCGCCCGTGCTACTGGGAGCATCTCA
CACGAATACCCCTCGGATAAAGCTTGTTTTGACCCATGAAAAAGGTCCGG
AGCTCACGTTGGACCTGGAGCTCGACCAGAACACGCTTGACGCTCGTGCA
GAGGCGTACAAGTTGGCatgcggggggcggagagggagtgccGGCGTTCA
GGGACATGTGCAAAATGTtggaggtgagagagggaaggacgagcATGCCA
GACGAGGCGCAAGTTTGCAAATGCGGAGGTATGAGTACAGGCGGTGCGGG
GAGCTGGTCTTGGGGCAGGacctggggaaggaggtgaacgTGTGGGCGAT
GGTGGGCTCCATGGGCGCCCCGAGGCCCACGAACGGCACGGACTTCTCGC
AAAGCTTCCTCTTGGTGGACGAGACCATGACAGAGGCGGACATGGGGGTG
GTCTGCAACGTCTTCCGGCCTGCGCCCGAGCTTTTCCCCCCGGTCCAGGG
CGCGGGCGACTTGTTGCGGTGCCACCGGGTCCGCGTCAGGGAGTACCAAG
GCCACCCCCAGCTGGTGGGCCCCGGACAAATCCACCGGTCCCAGTACCTG
GTGGTGAGACGGCGGCCCGCGGCGGGGCccgtgggcgtgggggagaagtg
ggaggcggccaagtgggaggtggaggcgaccTCGGAGAGCTTCACGTTCG
AGgcggcggacaaggaggcaATTCTGCGGCTCTGGCGCTGGCGGGAAGAG
AAATGCCTTCCCTCGTGGGCATGGATCAATCAGGAGTATAACATGGGCCC
CCGAACTGTGCACCAGGTCTGGAGGCGCCTGCGGGGTCAGGAGTGGCTGT
CGCTGTCTAGGGCCCACCCCCCgcccgcggaggagggggaggagatgccg
CCCGCCTCTCTCTTCGACGAGCCGGGGGACTTTGTGGCCTTGGTGGCCGC
CAAAGGCTCCCAGGGAGGCACTTTGCTCCTGTGGGACGCGACGGGCCCGG
GAGGACAGGCGGGTCTCGtgcgggcctgggggggggcgggggcgtgcAGC
AGGCCCTTGAAGAGGCGATTGCCAGCCCCCGATGGGGGGAGTTGAGGGAG
ATGGCAGCGCGGGACGTGATGCTGGACGGAGGCAGAGCCGACAAGATGGA
TGGAGATGGGGCGGAGAGACTGCCGCCTGCGATGTACAGCGAGGAGCTGC
CAGGACTTGGCGCGCTCGAGGAGGCCCTGCAGAAGCACGGGTGCTGCGTG
CCCttgacggtggcgggggagcatCAGTGGCGGCTGAAGCTCTTGAACAT
CCCAGTAGGCGCCTGGCTGCGTGTCCGAGGCTTGACCATCGGCCCTgcgg
ggcgaggggagggtggggatggggaagagaagcTGTGGGCGGGTATGAAC
GCCTCCCTGATATCCATGCCCGCGAAGTCCTTTGAAGTGCACAGGGTCGC
GGTCCGTTTCCTTCAACGTCTGCGTATGCACCAGCGTAGGCTTGCAGCAC
AGGCCCTGCTGAACCAGACCGCCAAGTGTATGCGGCTGTTCGAGTCCCCG
CCACCCCGCACGAGGAAGCACGGGTCCCAGCACCCGCTTGCCTACGTCGT
GGAGGCTCTAGGATCCAGCACTCCCACCATCTTCGCCTTGCGCGTGAAGA
TCGTCGGATGGTGGCCTCAGGACCTCCAGCGGTTTTGTGTGGAGGACGAT
GGGAAATGGCGCTTCTTGTTCACGCTCCGATTGGAGGATGTGACGGGGGC
GCTGGACGCCGTGGTCTTCGGGGACGTGGCGGAATGGTtctttgtggacc
ggggcCTGAGGCCCACGGActtggcgggggagggagccgagACAAGGGCC
TCTTTACAAGCGATCGGAGAGGCGATGGAAGAGTTCAAAAGACAAGGTTA
TTTTGATTTCGTGGTTAAGTCCTACCTGACCCGtggagacagagggaggg
agggaaagatgcGAGGGAGAATGGTCAAGCGATTTCGCCTTCTGAAGCCT
GCAGGCTGA

Coding sequence (CDS) from alignment at KK037254.1:196808..199266+

>rna9570 ID=rna9570|Name=rna9570|organism=Nannochloropsis gaditana|type=CDS|length=2754bp|location=Sequence derived from alignment at KK037254.1:196808..199266+ (Nannochloropsis gaditana)
ATGTCTGGCGCTGCACAACTCCAGTACGTAGTCGGTGGCCATGACGCAGA
TGGCAAACGGGATGGTATGCTCCGTGCAAAAAACACTCCTCAAGGCGTCG
CAACCTGTATAGCATCAATAAATCTTGCCACCACAGAGCTTCTTAATGTT
CAGGGGAAAGTACATGCCATGCAAGGACTGCGGGCGTGTATtcgggacga
ggaaggcgtgaGCGGGGGTACCGCAGGACTTTTAGGAGGGCCGCTCGACA
ACGGACCTCTGGCCTCCATGGCAACGACAGTAGTCAGCTGCACCTTGCAC
GGGGCAGATGGAAATGGGAGGCCCAGTAATCGCATTCGTGTGTTCTTCTA
CGATAAGTGGGCGGAAGAGATCGGAGACTGCCTCGAAAACAATTGCCTGC
TCTCTCTCACAGGGCCTGGCGAGATGGTCCGGGCGGTGCCAACGGGGGAT
CACGGCTGTGCCTTAGTTGTCGCCCCGCCCGTGCTACTGGGAGCATCTCA
CACGAATACCCCTCGGATAAAGCTTGTTTTGACCCATGAAAAAGGTCCGG
AGCTCACGTTGGACCTGGAGCTCGACCAGAACACGCTTGACGCTCGTGCA
GAGGCGTACAAGTTGGCatgcggggggcggagagggagtgccGGCGTTCA
GGGACATGTGCAAAATGTtggagTAGGCGCCTGGCTGCGTGTCCGAGGCT
TGACCATCGGCCCTgcggggcgaggggagggtggggatggggaagagaag
cTGTGGGCGGGTATGAACGCCTCCCTGATATCCATGCCCGCGAAGTCCTT
TGAAGTGCACAGGGTCGCGGTCCGTTTCCTTCAACGTCTGCGTATGCACC
AGCGTAGGCTTGCAGCACAGGCCCTGCTGAACCAGACCGCCAAGTGTATG
CGGCTGTTCGAGTCCCCGCCACCCCGCACGAGGAAGCACGGGTCCCAGCA
CCCGCTTGCCTACGTCGTGGAGGCTCTAGGATCCAGCACTCCCACCATCT
TCGCCTTGCGCGTGAAGATCGTCGGATGGTGGCCTCAGGACCTCCAGCGG
TTTTGTGTGGAGGACGATGGGAAATGGCGCTTCTTGTTCACGCTCCGATT
GGAGGATGTGACGGGGGCGCTGGACGCCGTGGTCTTCGGGGACGTGGCGG
AATGGTtctttgtggaccggggcCTGAGGCCCACGGActtggcgggggag
ggagccgagACAAGGGCCTCTTTACAAGCGATCGGAGAGGCGATGGAAGA
GTTCAAAAGACAAGGTTATTTTGATTTCGTGGTTAAGTCCTACCTGACCC
GtggagacagagggagggagggaaagatgcGAGGGAGAATGGTCAAGCGA
TTTCGCCTTCTGAAGCCTGCAGGCTGAATGTCTGGCGCTGCACAACTCCA
GTACGTAGTCGGTGGCCATGACGCAGATGGCAAACGGGATGGTATGCTCC
GTGCAAAAAACACTCCTCAAGGCGTCGCAACCTGTATAGCATCAATAAAT
CTTGCCACCACAGAGCTTCTTAATGTTCAGGGGAAAGTACATGCCATGCA
AGGACTGCGGGCGTGTATtcgggacgaggaaggcgtgaGCGGGGGTACCG
CAGGACTTTTAGGAGGGCCGCTCGACAACGGACCTCTGGCCTCCATGGCA
ACGACAGTAGTCAGCTGCACCTTGCACGGGGCAGATGGAAATGGGAGGCC
CAGTAATCGCATTCGTGTGTTCTTCTACGATAAGTGGGCGGAAGAGATCG
GAGACTGCCTCGAAAACAATTGCCTGCTCTCTCTCACAGGGCCTGGCGAG
ATGGTCCGGGCGGTGCCAACGGGGGATCACGGCTGTGCCTTAGTTGTCGC
CCCGCCCGTGCTACTGGGAGCATCTCACACGAATACCCCTCGGATAAAGC
TTGTTTTGACCCATGAAAAAGGTCCGGAGCTCACGTTGGACCTGGAGCTC
GACCAGAACACGCTTGACGCTCGTGCAGAGGCGTACAAGTTGGCatgcgg
ggggcggagagggagtgccGGCGTTCAGGGACATGTGCAAAATGTtggag
TAGGCGCCTGGCTGCGTGTCCGAGGCTTGACCATCGGCCCTgcggggcga
ggggagggtggggatggggaagagaagcTGTGGGCGGGTATGAACGCCTC
CCTGATATCCATGCCCGCGAAGTCCTTTGAAGTGCACAGGGTCGCGGTCC
GTTTCCTTCAACGTCTGCGTATGCACCAGCGTAGGCTTGCAGCACAGGCC
CTGCTGAACCAGACCGCCAAGTGTATGCGGCTGTTCGAGTCCCCGCCACC
CCGCACGAGGAAGCACGGGTCCCAGCACCCGCTTGCCTACGTCGTGGAGG
CTCTAGGATCCAGCACTCCCACCATCTTCGCCTTGCGCGTGAAGATCGTC
GGATGGTGGCCTCAGGACCTCCAGCGGTTTTGTGTGGAGGACGATGGGAA
ATGGCGCTTCTTGTTCACGCTCCGATTGGAGGATGTGACGGGGGCGCTGG
ACGCCGTGGTCTTCGGGGACGTGGCGGAATGGTtctttgtggaccggggc
CTGAGGCCCACGGActtggcgggggagggagccgagACAAGGGCCTCTTT
ACAAGCGATCGGAGAGGCGATGGAAGAGTTCAAAAGACAAGGTTATTTTG
ATTTCGTGGTTAAGTCCTACCTGACCCGtggagacagagggagggaggga
aagatgcGAGGGAGAATGGTCAAGCGATTTCGCCTTCTGAAGCCTGCAGG
CTGA

Synonyms

Publications