rna9555, rna9555 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9555
Unique Name	rna9555
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	702
Alignment location	KK037254.1:161141..162139 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100319g7.4373.mrna
Orig protein id	gnl\|cribi\|Naga_100319g7.4373
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037254.1	supercontig	KK037254.1:161141..162139 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100319g7	gene9277	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9555	rna9555-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21151.1	cds9524	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037254.1:161141..162139+
coding sequence from alignment at KK037254.1:161141..162139+

mRNA sequence

>rna9555 ID=rna9555|Name=rna9555|organism=Nannochloropsis gaditana|type=mRNA|length=702bp
ACTCCCTCGTCCATCGTGTGATGCGCGTCATTTCCAGGGTCTTCTCGGGA
GCCATGATGTCGCGCTTTGTCCGCCCCATGCTCTCCTGGAATCGAGACGC
CGTACGGCTTACGGCCTACACCTTTGCGGTCAGTGCCCGTGCCGCTATCA
CGACGGCCTTCTCTGGACCATGTGCAGCAGCGGGCGATCGGGAGCACCAT
TCTCTCCTAGTGCACTGGCAGCAGCAGCGACGGCATCGGTGGGCGGGCGT
GGCGGAGTTTGACGGTAGCAAACAGGCAGCCATGCAGTTCTTGGACGAGG
GGGCGCAATTCGAGGGATTGGTAAAGCGGTGGGACGCCCGCAAGTACTAC
ATAAAGCCTTTCGTACAGCGCAAGCAACGGTACAACCGTTGGGTCCGCCG
GCGCTCTATGGAAAAAATCAACCGTATCCTGGAACGAGTCCGCTATGAGA
AAGCCAATGCCAGATCCACAAATCCTCGGCTTGCCGCCATTCTAGGTAGC
AAAGAAAAGAAACATACACCCGTGGAAGGCTGAAAAGATGACGGCCCAGC
CATCAGGAGGAATCACGATGCTTGTGAGTTGTCATGGAGACCAACGCTTT
GGGTGTTGACGAAAATAATGTACATGGACGCACGCGGAGGGATCAAACCG
ACAACGCCGGGAAAGGAGAAAAGAAAAAGAAAAAAACGAGTGCCTTATAA
CC

protein sequence of rna9555

>rna9555-protein ID=rna9555-protein|Name=rna9555|organism=Nannochloropsis gaditana|type=polypeptide|length=130bp
MHANFLRNNASASAGSGHFEPAPQHAGGDAANAVARVNAKLDELDRVLQD
VRQKDIKRVEEEEKARLIEKVGTKAMELNKAREELAQTQLRKAQAEERLR
AHELLVQIHKTIENAFVSSGRKSVYQNQNR

mRNA from alignment at KK037254.1:161141..162139+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9555 ID=rna9555|Name=rna9555|organism=Nannochloropsis gaditana|type=mRNA|length=999bp|location=Sequence derived from alignment at KK037254.1:161141..162139+ (Nannochloropsis gaditana)
TTCCGAGCTATAGTCACTTTAAATCTCAGCAGTGTACTGCTTGTAGGACT
TCTCTCAAATTGCAACCTTCCTCCATGCTACAGCAGTGCACTACGCTGGG
GCGAAGACAAAGGACCCGTGGTGCTTGGAGCTCCCGTTGGAAAGCGTAAT
AAGTTCCGTAATTGCCTTATTTTTCTTGCGGGTAAAAGAGGCAGCAAGGG
CAAGGATCCTGTATTAAACAGATATCCCTCCACAAGGCGTTCGACATCCC
GGTGACATGCATGCTAATTTTTTACGCAACAATGCTTCAGCATCAGCGGG
CTCTGGGCACTTCGAGCCAGCGCCTCAGCACGCTGGCGGAGATGCCGCAA
ATGCAGTAGCACGCGTGAATGCGAAACTAGACGAATTGGACCGTGTGCTC
CAAGATGGTACGTTTGCTGAAATATTTTACGCAAGCTTTGTCaacttttt
tcctttgaACAAAGCAAGTGAATGTTATTTCCATCATTTTGTTCTTAAAC
AGTAGCCTCACGCACTTCTTTCTTCAATGTCTAACAGTTCGTCAAAAAGA
CATCAaacgcgtggaggaagaagagaaagctAGGCTCATTGAGAAAGTTG
GAACCAAAGCGATGGAACTGAACAAGGCTCGCGAAGAACTCGCTCAGACT
CAACTCCGCAAGGCGCAGGCTGAAGAGAGGCTTCGAGCACATGAGCTCCT
GGTGCAGATCCACAAGACGATCGAGAATGCCTTTGTGTCTTCAGGGCGAA
AATCCGTCTACCAGAATCAAAACCGGTAGCATACAGAGGTGGACAGAGAT
TGTGTGGAGCGGTACTTCGGGAGGAAGCGTGTTGGCCAAGCAATGATCAC
GGAAATATGTCTTCCTATGTGGTGAGATGGCATTAGGAATACTCATGCAT
CAAGGTAGTATAATCTAACATGCCGACTGCCTAGCCTCCATTCGTCCCTG
TAATGTCTCTTACTGTAAAAAGGAAATGGATTATAACGGCTCGTTCTTC

Coding sequence (CDS) from alignment at KK037254.1:161141..162139+

>rna9555 ID=rna9555|Name=rna9555|organism=Nannochloropsis gaditana|type=CDS|length=786bp|location=Sequence derived from alignment at KK037254.1:161141..162139+ (Nannochloropsis gaditana)
ATGCATGCTAATTTTTTACGCAACAATGCTTCAGCATCAGCGGGCTCTGG
GCACTTCGAGCCAGCGCCTCAGCACGCTGGCGGAGATGCCGCAAATGCAG
TAGCACGCGTGAATGCGAAACTAGACGAATTGGACCGTGTGCTCCAAGAT
GTTCGTCAAAAAGACATCAaacgcgtggaggaagaagagaaagctAGGCT
CATTGAGAAAGTTGGAACCAAAGCGATGGAACTGAACAAGGCTCGCGAAG
AACTCGCTCAGACTCAACTCCGCAAGGCGCAGGCTGAAGAGAGGCTTCGA
GCACATGAGCTCCTGGTGCAGATCCACAAGACGATCGAGAATGCCTTTGT
GTCTTCAGGGCGAAAATCCGTCTACCAGAATCAAAACCGGTAGATGCATG
CTAATTTTTTACGCAACAATGCTTCAGCATCAGCGGGCTCTGGGCACTTC
GAGCCAGCGCCTCAGCACGCTGGCGGAGATGCCGCAAATGCAGTAGCACG
CGTGAATGCGAAACTAGACGAATTGGACCGTGTGCTCCAAGATGTTCGTC
AAAAAGACATCAaacgcgtggaggaagaagagaaagctAGGCTCATTGAG
AAAGTTGGAACCAAAGCGATGGAACTGAACAAGGCTCGCGAAGAACTCGC
TCAGACTCAACTCCGCAAGGCGCAGGCTGAAGAGAGGCTTCGAGCACATG
AGCTCCTGGTGCAGATCCACAAGACGATCGAGAATGCCTTTGTGTCTTCA
GGGCGAAAATCCGTCTACCAGAATCAAAACCGGTAG

Synonyms

Publications