rna9516, rna9516 (mRNA) Nannochloropsis gaditana

Overview
Namerna9516
Unique Namerna9516
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length797
Alignment locationKK037254.1:38430..39990 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100624g1.2156.mrna
Orig protein idgnl|cribi|Naga_100624g1.2156
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:38430..39990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100624g1gene9237Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9516rna9516-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21187.1cds9485Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9516 ID=rna9516|Name=rna9516|organism=Nannochloropsis gaditana|type=mRNA|length=797bp
AGGAAGGAAGTTGTGTCCGTGATATGGCGTCGGGGTCTGTCTCACACGCA
CGCCGGGGGTTCAGTCGCTTTCTTTGGCCATTAGGTTTTGCAGCTTTTTG
GGCAGCCCAACTGTACCTCTCTTGGAAGGTCTTCTCAGCTTTTACGGATA
AAGATGCACCTTCAACGTTGCTTGCAGTCCCAGAGAGCTATGGCGAGGAA
AGTGGACGGAAAATGGGAATGTGGGCGGATAGGACGAGGTTATGGAATCA
AGGGAAGCGATATGAAGCCCTCTCTCTCAGCGGTGATATGCTTCGCGGGC
AGAACCTCCCCACCAGGGCCGTTCCCCCCCTTCCCATCCCATCACCCGGG
CCGGACGAGAGCCGAGCCCAGACCGGAAAGAAAAAGTATAGGGTCGCCAT
GCTTCTTCCTTTCATCGGGCCCATTTTTCCTTCCTGGTTCCGGACGTTCG
CCGCCTCCTTGGCGGCCAGGGACGACGGGAGCGTGCCGATGGACTGGTTC
ATCTTCCACGAAGGAGCCCGCGTACCTCTCGGCTACCATCCCCCTACCAA
CGTGCACCTGATCGACCTGCGCCCTGAAGGCGGGCTGGCCCGTCGGATCG
TCCGCCGGGGCCGTGGGGTCCTGTTTCCGGAGAGCGGGCGGGAGCAAGGG
AAGGAGAAAGGGTTCGATGAGGAAGAGGCGGTGGCCATTTTACGGGAGGG
CTTGAAGCGGAAGCCTGCCTTGTTGATTCAATTCAAGGTACGGTGTCTGG
AGGGGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGGCGGGAG
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protein sequence of rna9516

>rna9516-protein ID=rna9516-protein|Name=rna9516|organism=Nannochloropsis gaditana|type=polypeptide|length=352bp
MPGREQERKEEGGGEQELDGFLPQRLLETLALWPATAPVVVVTPFPLPPA
LHHHLLRHHPSVLFLPFFEAGEDRREGGRARERFHPLPYKAMVNRGLDAV
SSRYVFGPLDPSKIQLEGGREGGREGVYRVLMAAMKDVEGRERKGGWGGG
RGGNAIVLPVLASEEGGGEGGREDGEEGKVAQGWLSLPSSRQTKRGKGPI
LPSLPPSMWHVLQGARQEALLLVEGPLFSFNWWAQPRVQAPVLLLDLNVP
PVGREMGSGGGRGGGGREGGCLCGGWRSWAGTSASTRSGPGAWPCSATVS
MPSLPPPSPYGSSLPRRTTPLRGDIWMVVGRRKRRGQMKGSVGVLTGCSH
GM
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mRNA from alignment at KK037254.1:38430..39990+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9516 ID=rna9516|Name=rna9516|organism=Nannochloropsis gaditana|type=mRNA|length=1561bp|location=Sequence derived from alignment at KK037254.1:38430..39990+ (Nannochloropsis gaditana)
atgccagggagggagcaggagcggaaggaggaaggcggaggggagcagga
gctggaCGGCTTTTTGCCGCAGCGGCTGCTCGAAACCCTGGCTTTGTGGC
CGGCCACCGCCCCTGTGGTCGTGgtcacgcccttccccttaccccccgcc
ctccaccaccacctcctccggcaCCACCcgtccgtcctcttccttccttt
cttcgaggcgggcgaggacaggagggagggaggacgggcgcgggAGAGGT
TCCACCCCTTGCCTTACAAGGCCATGGTCAACAGAGGTCTGGACGCCGTC
TCCTCGCGCTACGTTTTCGGGCCCTTGGACCCCTCCAAGATCCAattgga
gggcgggagggagggcgggagggagggggtgtaCCGGGTCCTGATGGCGG
CCATGAAAgacgtggagggaagggaacgaaaggggggatgggggggaggg
cgaggtgggaaTGCGATTGTGCTTCCGGTCCTGGCAtcggaagagggcgg
gggggagggcgggagggaagacggggaggagggcaaggttgCACAGGGct
ggctctccctcccttcctcgcgccAAACCAAGCGGGGGAAAGGTCCgatc
ttgccctccctccctccttccatgtGGCACGTTTTGCAGGGGGCAAGGCA
GGAAGCCCTCCTCTTGGTCGAAGgacccctcttctcttttaATTGGTGGG
CACAACCCCGGGTTcaggcccccgtcctcctgctcgacTTGAACGTCCCT
CCCGTTGGGCGGGAAatgggaagcgggggagggcgggggggaggggggag
ggagggaggttgttTGTGCGGTGGTTGGAGGAGTTGGGCGGGCACGAGTG
CTTCGACGCGGTCTGGGCCTGGGGCTTGGCCGTGCTCGGCTACCgtttcc
atgccctccctcccgcctccctctccctacGGATCGTCTCTCCCGAGGCG
TACCACGCCTTTGCGCGGGGACATTTGGATGGTCGTGgggcggcggaaga
ggagggggcaaaTGAAGGGGAGTGTGGGTGTGCTCACGGGTTGCAGCCAC
GGGATGTGAAAAACACGCTGTGGAAGTTCGAGCAATGGGTGGATAAAATC
CGGGTGATATGGAGCGAGTTGCGGCATGCCGAGGCCGAGAGGACCGAGTT
TGCcgcagagagagaggcggtggtggcagcagccgcagcagcagccatgc
GAGATACCACCGATAGGCAAGGGGACTTCAGGAAGAAGCTTTGAACAAAG
TAATTGTGCCTATAAGATTGGATACCATGGTGTATTTCTGGACTGACGAC
AGGAGACTGAAGCAAGTTACCAGTTTTGTTCGGTTGCTATGGTAGTTTCC
TTGTGGGAAAATGCGTGGCGCGGGACAGGTCCGTGAATTCTTTCAGTGCC
ACGACGACTGAAGAGGCCACAGCCGAGATGTTGCAAAGAAATATGTACAA
GTATGCCTGGATGATACAATCCACAAGGGTTATGACTTGGTTCTCTTGGC
CGGAACAAGGCCGAAAGACGTAAAAGCCGTTGGTCAGGCAtgtcgccctc
gtcctctttcc
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Coding sequence (CDS) from alignment at KK037254.1:38430..39990+

>rna9516 ID=rna9516|Name=rna9516|organism=Nannochloropsis gaditana|type=CDS|length=1059bp|location=Sequence derived from alignment at KK037254.1:38430..39990+ (Nannochloropsis gaditana)
atgccagggagggagcaggagcggaaggaggaaggcggaggggagcagga
gctggaCGGCTTTTTGCCGCAGCGGCTGCTCGAAACCCTGGCTTTGTGGC
CGGCCACCGCCCCTGTGGTCGTGgtcacgcccttccccttaccccccgcc
ctccaccaccacctcctccggcaCCACCcgtccgtcctcttccttccttt
cttcgaggcgggcgaggacaggagggagggaggacgggcgcgggAGAGGT
TCCACCCCTTGCCTTACAAGGCCATGGTCAACAGAGGTCTGGACGCCGTC
TCCTCGCGCTACGTTTTCGGGCCCTTGGACCCCTCCAAGATCCAattgga
gggcgggagggagggcgggagggagggggtgtaCCGGGTCCTGATGGCGG
CCATGAAAgacgtggagggaagggaacgaaaggggggatgggggggaggg
cgaggtgggaaTGCGATTGTGCTTCCGGTCCTGGCAtcggaagagggcgg
gggggagggcgggagggaagacggggaggagggcaaggttgCACAGGGct
ggctctccctcccttcctcgcgccAAACCAAGCGGGGGAAAGGTCCgatc
ttgccctccctccctccttccatgtGGCACGTTTTGCAGGGGGCAAGGCA
GGAAGCCCTCCTCTTGGTCGAAGgacccctcttctcttttaATTGGTGGG
CACAACCCCGGGTTcaggcccccgtcctcctgctcgacTTGAACGTCCCT
CCCGTTGGGCGGGAAatgggaagcgggggagggcgggggggaggggggag
ggagggaggttgttTGTGCGGTGGTTGGAGGAGTTGGGCGGGCACGAGTG
CTTCGACGCGGTCTGGGCCTGGGGCTTGGCCGTGCTCGGCTACCgtttcc
atgccctccctcccgcctccctctccctacGGATCGTCTCTCCCGAGGCG
TACCACGCCTTTGCGCGGGGACATTTGGATGGTCGTGgggcggcggaaga
ggagggggcaaaTGAAGGGGAGTGTGGGTGTGCTCACGGGTTGCAGCCAC
GGGATGTGA
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Synonyms
Publications