rna9498, rna9498 (mRNA) Nannochloropsis gaditana

Overview
Namerna9498
Unique Namerna9498
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length324
Alignment locationKK037254.1:6634..7279 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101565g3.4695.mrna
Orig protein idgnl|cribi|Naga_101565g3.4695
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037254.1supercontigKK037254.1:6634..7279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101565g3gene9219Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21206.1cds9467Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9498rna9498-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9498 ID=rna9498|Name=rna9498|organism=Nannochloropsis gaditana|type=mRNA|length=324bp
TCACGGCCCGCAATGCCGCCAAAATGACGATCATGCGGCCGGAGATGGAC
GTGATTACCGAGCAGATCAGGGCTGTCCCTCCTGGAGATCGGCAAGCCCA
GATGAGGTCCAAAAAAGAGCTCTACGGCCTCTTCGCCAAGTACCAGTGCT
CCCCGTTCCGATCCTTTGTTGGTCCCCTGGCCAACATCGGCGTCTTCGTC
CCCATGTTCTTTGGCCTGCAGAAGATGGGCGACTACCACGTGCCAGGTGC
CCGCCCTCCCTCCCGCCCTCCCTCCCGCCTATAGGATGTCTGCAGACCCA
GCCTTCCCTCCTCAGGCCCGCTCC
back to top

protein sequence of rna9498

>rna9498-protein ID=rna9498-protein|Name=rna9498|organism=Nannochloropsis gaditana|type=polypeptide|length=209bp
MTCRILGGSLIWRRGSVTSAGSRSLAALTSSTAAAVAPAGITCSSRRLNT
KHSSTLRDFRNTYAYSITASFPKRGKFPLTLHFSHAPVRGLAFWSRSPPP
PPSQSAPPTSPPSSSDTPALTTIYEESTFASPSETIAPIAPTPPDSPSGI
SPFSDMVSKVTPDLSTATGEGTAVMGMESLTNWPPDLVIRLLESLHEGTG
LPYWATIVG
back to top

mRNA from alignment at KK037254.1:6634..7279-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9498 ID=rna9498|Name=rna9498|organism=Nannochloropsis gaditana|type=mRNA|length=646bp|location=Sequence derived from alignment at KK037254.1:6634..7279- (Nannochloropsis gaditana)
AAATAACAGGTGGAGACCATGACGTGCCGCATTCTGGGAGGAAGCCTTAT
TTGGAGGAGAGGTAGTGTAACCAGTGCTGGCAGTCGAAGTCTCGCTGCGT
TAACCTCCTCCACTGCTGCTGCTGTTGCCCCCGCCGGTATTACTTGCAGC
AGCCGCAGACTAAACACCAAGCACAGCAGCACCCTTAGGGATTTTCGCAA
TACGTATGCGTATTCGATAACGGCCTCGTTTCCAAAGAGGGGAAAGTTTC
CCCTTACTTTGCACTTCAGCCACGCCCCTGTCCGAGGCCTCGCATTCTGG
TCGCGATCTCCGCCCCCCCCTCCTTCCCAATCTGCACCTCCCACATCCCC
TCCATCCTCATCAGACACCCCTGCCTTGACCACCATCTACGAAGAATCGA
CATTTGCATCCCCTTCAGAGACCATCGCGCCCATAGCTCCCACGCCCCCA
GACTCCCCCTCCGGGATCTCCCCGTTCAGTGACATGGTAAGTAAAGTTAC
GCCGGACCTATCCACCGCCACGGGGGAAGGAACTGCAGTCATGGGGATGG
AATCACTCACGAATTGGCCCCCGGATTTGGTTATTCGGCTCCTGGAGTCT
CTGCACGAAGGGACGGGCTTGCCGTACTGGGCCACCATCGTTGGGG
back to top

Coding sequence (CDS) from alignment at KK037254.1:6634..7279-

>rna9498 ID=rna9498|Name=rna9498|organism=Nannochloropsis gaditana|type=CDS|length=628bp|location=Sequence derived from alignment at KK037254.1:6634..7279- (Nannochloropsis gaditana)
ATGACGTGCCGCATTCTGGGAGGAAGCCTTATTTGGAGGAGAGGTAGTGT
AACCAGTGCTGGCAGTCGAAGTCTCGCTGCGTTAACCTCCTCCACTGCTG
CTGCTGTTGCCCCCGCCGGTATTACTTGCAGCAGCCGCAGACTAAACACC
AAGCACAGCAGCACCCTTAGGGATTTTCGCAATACGTATGCGTATTCGAT
AACGGCCTCGTTTCCAAAGAGGGGAAAGTTTCCCCTTACTTTGCACTTCA
GCCACGCCCCTGTCCGAGGCCTCGCATTCTGGTCGCGATCTCCGCCCCCC
CCTCCTTCCCAATCTGCACCTCCCACATCCCCTCCATCCTCATCAGACAC
CCCTGCCTTGACCACCATCTACGAAGAATCGACATTTGCATCCCCTTCAG
AGACCATCGCGCCCATAGCTCCCACGCCCCCAGACTCCCCCTCCGGGATC
TCCCCGTTCAGTGACATGGTAAGTAAAGTTACGCCGGACCTATCCACCGC
CACGGGGGAAGGAACTGCAGTCATGGGGATGGAATCACTCACGAATTGGC
CCCCGGATTTGGTTATTCGGCTCCTGGAGTCTCTGCACGAAGGGACGGGC
TTGCCGTACTGGGCCACCATCGTTGGGG
back to top
Synonyms
Publications