EWM21213.1, cds9458 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21213.1 vs. NCBI_GenBank
Match: gi|585101314|gb|EWM21213.1| (minor histocompatibility antigen [Nannochloropsis gaditana] >gi|585101315|gb|EWM21214.1| minor histocompatibility antigen [Nannochloropsis gaditana]) HSP 1 Score: 952.97 bits (2462), Expect = 0.000e+0 Identity = 483/483 (100.00%), Postives = 483/483 (100.00%), Query Frame = 0 Query: 1 MLPPSASLHSAFILPPSSSTFTLPSASFSPLSPVPAASSLSFNALYLRRKHQLAPLQPHRARARPLAFWQRQTEEREVAEEAEEMSDDEKEAIRLQKILDKRLVLAAQALQEDWPVYLFLIGVQAIPVLAGGLVGGNFLFFWLTACTCVYLGAKRSSAVARAGEIFQAVTTRNAFAAPIAASISLFGTYYLLKNQFDIATVYQLMTTFFGGYCLRDVLISTLLALGLGGSIQSFYAPPPKPIPARRGPFSSPAPPPPSPPASSSSFPPLRDPDEGELDGLKLAATLLSGGVCATYLWGPAAAVAAAGASGGASGAVFLGAISALLAANFITSGIALQAQASIPIKSLKPALIFLTGLFLYDIYFVFFSPGGVMESVATSLEGPVKLLSPRAAVRREGRRPTKEGITSPSPPRFQSRFSRLTAFFSPCPYPQSAHPSLPSSTRILPSPLGPPGCHSPRPVPLLHPGTRRHRGAGPLRRSSQADR 483 MLPPSASLHSAFILPPSSSTFTLPSASFSPLSPVPAASSLSFNALYLRRKHQLAPLQPHRARARPLAFWQRQTEEREVAEEAEEMSDDEKEAIRLQKILDKRLVLAAQALQEDWPVYLFLIGVQAIPVLAGGLVGGNFLFFWLTACTCVYLGAKRSSAVARAGEIFQAVTTRNAFAAPIAASISLFGTYYLLKNQFDIATVYQLMTTFFGGYCLRDVLISTLLALGLGGSIQSFYAPPPKPIPARRGPFSSPAPPPPSPPASSSSFPPLRDPDEGELDGLKLAATLLSGGVCATYLWGPAAAVAAAGASGGASGAVFLGAISALLAANFITSGIALQAQASIPIKSLKPALIFLTGLFLYDIYFVFFSPGGVMESVATSLEGPVKLLSPRAAVRREGRRPTKEGITSPSPPRFQSRFSRLTAFFSPCPYPQSAHPSLPSSTRILPSPLGPPGCHSPRPVPLLHPGTRRHRGAGPLRRSSQADR Sbjct: 1 MLPPSASLHSAFILPPSSSTFTLPSASFSPLSPVPAASSLSFNALYLRRKHQLAPLQPHRARARPLAFWQRQTEEREVAEEAEEMSDDEKEAIRLQKILDKRLVLAAQALQEDWPVYLFLIGVQAIPVLAGGLVGGNFLFFWLTACTCVYLGAKRSSAVARAGEIFQAVTTRNAFAAPIAASISLFGTYYLLKNQFDIATVYQLMTTFFGGYCLRDVLISTLLALGLGGSIQSFYAPPPKPIPARRGPFSSPAPPPPSPPASSSSFPPLRDPDEGELDGLKLAATLLSGGVCATYLWGPAAAVAAAGASGGASGAVFLGAISALLAANFITSGIALQAQASIPIKSLKPALIFLTGLFLYDIYFVFFSPGGVMESVATSLEGPVKLLSPRAAVRREGRRPTKEGITSPSPPRFQSRFSRLTAFFSPCPYPQSAHPSLPSSTRILPSPLGPPGCHSPRPVPLLHPGTRRHRGAGPLRRSSQADR 483
BLAST of EWM21213.1 vs. NCBI_GenBank
Match: gi|553178503|ref|XP_005852561.1| (signal peptide peptidase [Nannochloropsis gaditana CCMP526] >gi|422295972|gb|EKU23271.1| signal peptide peptidase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 365.925 bits (938), Expect = 1.523e-117 Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0 Query: 203 QLMTTFFGGYCLRDVLISTLLALGLGGSIQSFYAPPPKPIPARRGPFSSPAPPPPSPPASSSSFPPLRDPDEGELDGLKLAATLLSGGVCATYLWGPAAAVAAAGASGGASGAVFLGAISALLAANFITSGIALQAQASIPIKSLKPALIFLTGLFLYDIYFVFFSPGGVMESVATSLEGPVKLLSPRAA 392 QLMTTFFGGYCLRDVLISTLLALGLGGSIQSFYAPPPKPIPARRGPFSSPAPPPPSPPASSSSFPPLRDPDEGELDGLKLAATLLSGGVCATYLWGPAAAVAAAGASGGASGAVFLGAISALLAANFITSGIALQAQASIPIKSLKPALIFLTGLFLYDIYFVFFSPGGVMESVATSLEGPVKLLSPRAA Sbjct: 273 QLMTTFFGGYCLRDVLISTLLALGLGGSIQSFYAPPPKPIPARRGPFSSPAPPPPSPPASSSSFPPLRDPDEGELDGLKLAATLLSGGVCATYLWGPAAAVAAAGASGGASGAVFLGAISALLAANFITSGIALQAQASIPIKSLKPALIFLTGLFLYDIYFVFFSPGGVMESVATSLEGPVKLLSPRAA 462 HSP 2 Score: 337.035 bits (863), Expect = 2.745e-106 Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0 Query: 1 MLPPSASLHSAFILPPSSSTFTLPSASFSPLSPVPAASSLSFNALYLRRKHQLAPLQPHRARARPLAFWQRQTEEREVAEEAEEMSDDEKEAIRLQKILDKRLVLAAQALQEDWPVYLFLIGVQAIPVLAGGLVGGNFLFFWLTACTCVYLGAKRSSAVARAGEIFQ 167 MLPPSASLHSAFILPPSSSTFTLPSASFSPLSPVPAASSLSFNALYLRRKHQLAPLQPHRARARPLAFWQRQTEEREVAEEAEEMSDDEKEAIRLQKILDKRLVLAAQALQEDWPVYLFLIGVQAIPVLAGGLVGGNFLFFWLTACTCVYLGAKRSSAVARAGEIFQ Sbjct: 1 MLPPSASLHSAFILPPSSSTFTLPSASFSPLSPVPAASSLSFNALYLRRKHQLAPLQPHRARARPLAFWQRQTEEREVAEEAEEMSDDEKEAIRLQKILDKRLVLAAQALQEDWPVYLFLIGVQAIPVLAGGLVGGNFLFFWLTACTCVYLGAKRSSAVARAGEIFQ 167
BLAST of EWM21213.1 vs. NCBI_GenBank
Match: gi|298708825|emb|CBJ30784.1| (minor histocompatibility antigen H13, putative [Ectocarpus siliculosus]) HSP 1 Score: 95.5153 bits (236), Expect = 1.535e-17 Identity = 90/284 (31.69%), Postives = 122/284 (42.96%), Query Frame = 0 Query: 107 AQALQEDWPVYLFLIGVQAIPVLAGGLVGGNFLFFWLTACTCVYLGAKRSSAVARAGEIFQAVTTRNAFAAPIAASISLFGTYYLLK-NQFDIATVYQLMTTFFGGYCLRDVLISTLLALGLGGSIQSFYAPPPKPIPARRGPFSSPAPPPPSPPASSSSFPPLRDPDEGELDGLKLAATLLSGGVCATYLWGPAAAVAAAGASGGASGAVFLGAISALLAANFITSGIALQAQASIPIKSLKPALIFLTGLFLYDIYFVFFSPGGVMESVATSLEGPVKLLSP 389 A ++ED VYL L +Q +P L G +F++F L A + VYLG+KR E +T AF AP AAS+SLFG + LLK + YQ +TTF G VL L ++ P P S+P + +FP + D+ L A L+S A PA ++A L N I +Q+ I I + A I LTGLF YDI++VF + VM +VAT +E PVK L P Sbjct: 23 AALVEEDKNVYLGLFALQLLPSLLIGYKLASFVYFGLLAVSTVYLGSKRMDI---PDETRNPITAAQAFGAPFAASVSLFGVFALLKYTDISVGIAYQYLTTFLGVATSVSVLPPILRSV--------------LPENVVNAPVSAPL-----DTVLAKAFPETWENDDQPLLDFAELAVLVSATTAAFVYVNPAVGLSA-----------------KFLIPNVFAWCIGMQSIGLISISTFPAAAILLTGLFCYDIFWVFGTE--VMMTVATKIEAPVKFLFP 265
BLAST of EWM21213.1 vs. NCBI_GenBank
Match: gi|397619739|gb|EJK65379.1| (hypothetical protein THAOC_13764 [Thalassiosira oceanica]) HSP 1 Score: 85.8853 bits (211), Expect = 1.621e-14 Identity = 76/288 (26.39%), Postives = 117/288 (40.62%), Query Frame = 0 Query: 107 AQALQEDWPVYLFLIGVQAIPVLAGGLVGGNFLFFWLTACTCVYLGAKRSSAVARAGEIFQAVTTRNAFAAPIAASISLFGTYYLLKNQFDIATVYQLMTTFFGGYCLRDVLISTLLALGLGGSIQSFYAPPPKPIPARRGPFSSPAPPPPSPPASSSSFPPLRDPDEGELDGLKLAATLLSGGVCATYLWGPAAAVAAAGASGGASGAVFLGAISALLAANFITSGIALQAQASIPIKSLKPALIFLTGLFLYDIYFVFFSPGGVMESVATSLEGPVKLLSPRAAVR 394 A + ED Y + +Q +P+L G + + ++F+ A T VYLG ++ + E + V+ NA AP+ AS S+ G Y LLKN DI +Y ++ T FG + D+ + L L G + P PK I + + A P +C W P L +A+N + + + + +I + S + I L GLF YD ++VF S VM +VAT +E PVK + P VR Sbjct: 57 ANRVSEDKFAYALIFALQFMPLLGNGRLE-SLVYFYGVAVTTVYLGGRQETI-----EQAERVSKDNALFAPVFASASIGGLYLLLKNGIDITALYAVVVTLFGAISISDIGVPVLRNLIPGVDFANEEVPLPKAIVQKFKLDEADALPLDGLITLGLG------------------------LLCTAVYWSP------------------LVMEQKFIASNILAWSLGMASLGAISLGSFQTGAILLGGLFFYDAFWVFGSD--VMMTVATKVEAPVKFIFPADTVR 294
BLAST of EWM21213.1 vs. NCBI_GenBank
Match: gi|546297977|ref|XP_005710376.1| (unnamed protein product [Chondrus crispus] >gi|507106452|emb|CDF40082.1| unnamed protein product [Chondrus crispus]) HSP 1 Score: 76.6406 bits (187), Expect = 2.261e-11 Identity = 85/289 (29.41%), Postives = 122/289 (42.21%), Query Frame = 0 Query: 108 QALQEDWPVYLFLIGVQAIP-VLAGGLVGGNFLFFWLTACTCVYLGAKRSSAVARAGEIFQA--VTTRNAFAAPIAASISLFGTYYLLK-NQFDIATVYQLMTTFFGGYCLRDVLISTLL-ALGLGGSIQSFYAPPPKPIPARRGPFSSPAPPPPSPPASSSSFPPLRDPDEGELDGLKLAATLLSGGVCATYLWGPAAAVAAAGASGGASGAVFLGAIS-ALLAANFITSGIALQAQASIPIKSLKPALIFLTGLFLYDIYFVFFSPGGVMESVATSLEGPVKLLSPR 390 + + P Y+ L+ QA+P + V G+ +F TA + +G +R+ E FQ+ ++ A AAP AAS LFG+Y LLK +I ++ +TTF G CL++ L AL L G P+P G PA +L+ GPA A AA A+ A +L + + +N I GI + + + S A L GLF YDI++VF S VM SVAT ++ P KLL PR Sbjct: 85 RGINGTLPFYVALVAAQALPFIFPHSGVAGDLTYFTTTAVAALIIGCRRAPL-----EPFQSQPISKTQAIAAPFAASTFLFGSYLLLKYTTVNIGAIFNGLTTFAGTLCLKEALDPVFHSALSLAGLQDLVLWQQNSPLPTAEGDNIEPA---------------------------RLS-------------LGPALASVAAIATTVA----YLSHVEPTFVFSNMIALGICARVVSLVRPDSFVVAAGLLCGLFFYDIFWVFGSE--VMVSVATQIDSPGKLLFPR 322
BLAST of EWM21213.1 vs. NCBI_GenBank
Match: gi|168053011|ref|XP_001778932.1| (predicted protein [Physcomitrella patens] >gi|162669686|gb|EDQ56268.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 72.0182 bits (175), Expect = 7.960e-10 Identity = 105/366 (28.69%), Postives = 152/366 (41.53%), Query Frame = 0 Query: 42 FNALYLRRKHQLAPLQPHRARARPL--AFWQRQTEEREVAEEAEEM-----SDDEKEAI--RLQKILDKRLVLAAQALQEDWPVYLFLIGVQAIPVL-AGGLVGGNFLFFWLTACTCVYLGAKRSSAVARAGEIFQAVTTRNAFAAPIAASISLFGTYYLLKNQFDIATVYQLMTTFFGGYCLRDVLISTLLALGLGGSIQSFYAPPPKPIPARRGPFSSPAPPPPSPPASSSSFPPLRDPDEGELDGLKLA-ATLLSGGVCATYLWGPAAAVAAAGASGGASGAVFLGAISALLAANFITSGIALQAQASIPIKSLKPALIFLTGLFLYDIYFVFFSP----GGVMESVATS--LEGPVKLLSPR 390 FN + L KH + H+ R L AF ++ ER A+ + SDDE +A+ ++K +D + +E L L+ V +L L+F A +Y+G+ RS Q+VT + AAP+ ASISLFG Y LL+ FF +R IS L + ++ S APP + I P + FP D+GE L L A +L+ V G AAA+A+ SGA F NFI I + + + S A L+GL LYD+++VF S VM +VATS +GP+KL+ P+ Sbjct: 123 FNRIELECKH----ISVHKRRVSLLVPAFSNYRSTERRGAKIQCQAGLKPSSDDENDALVELVKKDVDIDGWQWTKTNKELIAYSLLLVAVPVGTILPQTHFQWSGALYFLFLAVWTIYVGSHRSLGKNPP----QSVTFKQGLAAPLFASISLFGFYTLLR--------------FFPNLDIR-TFISAYLGVAGVVAVASNLAPPLRSI-----------LPNAENVSWRIDFPKWLVEDDGEAVHLTLTPADILATAV------GIAAAIASK-----QSGAPF-------TLNNFIAVCIVTELLQLLSLGSFATAATMLSGLLLYDVFWVFGSSHVFGDNVMVTVATSPVFDGPMKLIFPQ 436
BLAST of EWM21213.1 vs. NCBI_GenBank
Match: gi|1004135605|gb|KXZ43659.1| (hypothetical protein GPECTOR_83g271 [Gonium pectorale]) HSP 1 Score: 62.7734 bits (151), Expect = 3.425e-7 Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 0 Query: 325 LAANFITSGIALQAQASIPIKSLKPALIFLTGLFLYDIYFVFFSPGGVMESVATSLEGPVKLLSPRAAVRREGRRP 400 A N + L+ + + S+ +I L GLF YDI++VF +P VM SVA + +GP+KLL PRA +G+RP Sbjct: 108 FANNVLGLAFCLEGIEHLSLGSVHVGVILLVGLFFYDIFWVFCTP--VMVSVAKNFDGPIKLLFPRAGTLEDGKRP 181 The following BLAST results are available for this feature:
BLAST of EWM21213.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 7
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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