EWM21213.1, cds9458 (CDS) Nannochloropsis gaditana

Overview
NameEWM21213.1
Unique Namecds9458
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:414642..414875 +
Alignment locationKK037253.1:414968..415128 +
Alignment locationKK037253.1:415297..415402 +
Alignment locationKK037253.1:415672..415779 +
Alignment locationKK037253.1:415891..416215 +
Alignment locationKK037253.1:416361..416443 +
Alignment locationKK037253.1:416509..416943 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21213.1
Productminor histocompatibility antigen
Orig transcript idgnl|cribi|Naga_100429g4.5115.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:414642..414875 +
KK037253.1supercontigKK037253.1:414968..415128 +
KK037253.1supercontigKK037253.1:415297..415402 +
KK037253.1supercontigKK037253.1:415672..415779 +
KK037253.1supercontigKK037253.1:415891..416215 +
KK037253.1supercontigKK037253.1:416361..416443 +
KK037253.1supercontigKK037253.1:416509..416943 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004190aspartic-type endopeptidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR007369Peptidase_A22B_SPP
Homology
BLAST of EWM21213.1 vs. NCBI_GenBank
Match: gi|585101314|gb|EWM21213.1| (minor histocompatibility antigen [Nannochloropsis gaditana] >gi|585101315|gb|EWM21214.1| minor histocompatibility antigen [Nannochloropsis gaditana])

HSP 1 Score: 952.97 bits (2462), Expect = 0.000e+0
Identity = 483/483 (100.00%), Postives = 483/483 (100.00%), Query Frame = 0
Query:    1 MLPPSASLHSAFILPPSSSTFTLPSASFSPLSPVPAASSLSFNALYLRRKHQLAPLQPHRARARPLAFWQRQTEEREVAEEAEEMSDDEKEAIRLQKILDKRLVLAAQALQEDWPVYLFLIGVQAIPVLAGGLVGGNFLFFWLTACTCVYLGAKRSSAVARAGEIFQAVTTRNAFAAPIAASISLFGTYYLLKNQFDIATVYQLMTTFFGGYCLRDVLISTLLALGLGGSIQSFYAPPPKPIPARRGPFSSPAPPPPSPPASSSSFPPLRDPDEGELDGLKLAATLLSGGVCATYLWGPAAAVAAAGASGGASGAVFLGAISALLAANFITSGIALQAQASIPIKSLKPALIFLTGLFLYDIYFVFFSPGGVMESVATSLEGPVKLLSPRAAVRREGRRPTKEGITSPSPPRFQSRFSRLTAFFSPCPYPQSAHPSLPSSTRILPSPLGPPGCHSPRPVPLLHPGTRRHRGAGPLRRSSQADR 483
            MLPPSASLHSAFILPPSSSTFTLPSASFSPLSPVPAASSLSFNALYLRRKHQLAPLQPHRARARPLAFWQRQTEEREVAEEAEEMSDDEKEAIRLQKILDKRLVLAAQALQEDWPVYLFLIGVQAIPVLAGGLVGGNFLFFWLTACTCVYLGAKRSSAVARAGEIFQAVTTRNAFAAPIAASISLFGTYYLLKNQFDIATVYQLMTTFFGGYCLRDVLISTLLALGLGGSIQSFYAPPPKPIPARRGPFSSPAPPPPSPPASSSSFPPLRDPDEGELDGLKLAATLLSGGVCATYLWGPAAAVAAAGASGGASGAVFLGAISALLAANFITSGIALQAQASIPIKSLKPALIFLTGLFLYDIYFVFFSPGGVMESVATSLEGPVKLLSPRAAVRREGRRPTKEGITSPSPPRFQSRFSRLTAFFSPCPYPQSAHPSLPSSTRILPSPLGPPGCHSPRPVPLLHPGTRRHRGAGPLRRSSQADR
Sbjct:    1 MLPPSASLHSAFILPPSSSTFTLPSASFSPLSPVPAASSLSFNALYLRRKHQLAPLQPHRARARPLAFWQRQTEEREVAEEAEEMSDDEKEAIRLQKILDKRLVLAAQALQEDWPVYLFLIGVQAIPVLAGGLVGGNFLFFWLTACTCVYLGAKRSSAVARAGEIFQAVTTRNAFAAPIAASISLFGTYYLLKNQFDIATVYQLMTTFFGGYCLRDVLISTLLALGLGGSIQSFYAPPPKPIPARRGPFSSPAPPPPSPPASSSSFPPLRDPDEGELDGLKLAATLLSGGVCATYLWGPAAAVAAAGASGGASGAVFLGAISALLAANFITSGIALQAQASIPIKSLKPALIFLTGLFLYDIYFVFFSPGGVMESVATSLEGPVKLLSPRAAVRREGRRPTKEGITSPSPPRFQSRFSRLTAFFSPCPYPQSAHPSLPSSTRILPSPLGPPGCHSPRPVPLLHPGTRRHRGAGPLRRSSQADR 483          
BLAST of EWM21213.1 vs. NCBI_GenBank
Match: gi|553178503|ref|XP_005852561.1| (signal peptide peptidase [Nannochloropsis gaditana CCMP526] >gi|422295972|gb|EKU23271.1| signal peptide peptidase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 365.925 bits (938), Expect = 1.523e-117
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
Query:  203 QLMTTFFGGYCLRDVLISTLLALGLGGSIQSFYAPPPKPIPARRGPFSSPAPPPPSPPASSSSFPPLRDPDEGELDGLKLAATLLSGGVCATYLWGPAAAVAAAGASGGASGAVFLGAISALLAANFITSGIALQAQASIPIKSLKPALIFLTGLFLYDIYFVFFSPGGVMESVATSLEGPVKLLSPRAA 392
            QLMTTFFGGYCLRDVLISTLLALGLGGSIQSFYAPPPKPIPARRGPFSSPAPPPPSPPASSSSFPPLRDPDEGELDGLKLAATLLSGGVCATYLWGPAAAVAAAGASGGASGAVFLGAISALLAANFITSGIALQAQASIPIKSLKPALIFLTGLFLYDIYFVFFSPGGVMESVATSLEGPVKLLSPRAA
Sbjct:  273 QLMTTFFGGYCLRDVLISTLLALGLGGSIQSFYAPPPKPIPARRGPFSSPAPPPPSPPASSSSFPPLRDPDEGELDGLKLAATLLSGGVCATYLWGPAAAVAAAGASGGASGAVFLGAISALLAANFITSGIALQAQASIPIKSLKPALIFLTGLFLYDIYFVFFSPGGVMESVATSLEGPVKLLSPRAA 462          

HSP 2 Score: 337.035 bits (863), Expect = 2.745e-106
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0
Query:    1 MLPPSASLHSAFILPPSSSTFTLPSASFSPLSPVPAASSLSFNALYLRRKHQLAPLQPHRARARPLAFWQRQTEEREVAEEAEEMSDDEKEAIRLQKILDKRLVLAAQALQEDWPVYLFLIGVQAIPVLAGGLVGGNFLFFWLTACTCVYLGAKRSSAVARAGEIFQ 167
            MLPPSASLHSAFILPPSSSTFTLPSASFSPLSPVPAASSLSFNALYLRRKHQLAPLQPHRARARPLAFWQRQTEEREVAEEAEEMSDDEKEAIRLQKILDKRLVLAAQALQEDWPVYLFLIGVQAIPVLAGGLVGGNFLFFWLTACTCVYLGAKRSSAVARAGEIFQ
Sbjct:    1 MLPPSASLHSAFILPPSSSTFTLPSASFSPLSPVPAASSLSFNALYLRRKHQLAPLQPHRARARPLAFWQRQTEEREVAEEAEEMSDDEKEAIRLQKILDKRLVLAAQALQEDWPVYLFLIGVQAIPVLAGGLVGGNFLFFWLTACTCVYLGAKRSSAVARAGEIFQ 167          
BLAST of EWM21213.1 vs. NCBI_GenBank
Match: gi|298708825|emb|CBJ30784.1| (minor histocompatibility antigen H13, putative [Ectocarpus siliculosus])

HSP 1 Score: 95.5153 bits (236), Expect = 1.535e-17
Identity = 90/284 (31.69%), Postives = 122/284 (42.96%), Query Frame = 0
Query:  107 AQALQEDWPVYLFLIGVQAIPVLAGGLVGGNFLFFWLTACTCVYLGAKRSSAVARAGEIFQAVTTRNAFAAPIAASISLFGTYYLLK-NQFDIATVYQLMTTFFGGYCLRDVLISTLLALGLGGSIQSFYAPPPKPIPARRGPFSSPAPPPPSPPASSSSFPPLRDPDEGELDGLKLAATLLSGGVCATYLWGPAAAVAAAGASGGASGAVFLGAISALLAANFITSGIALQAQASIPIKSLKPALIFLTGLFLYDIYFVFFSPGGVMESVATSLEGPVKLLSP 389
            A  ++ED  VYL L  +Q +P L  G    +F++F L A + VYLG+KR        E    +T   AF AP AAS+SLFG + LLK     +   YQ +TTF G      VL   L ++               P      P S+P          + +FP   + D+  L      A L+S    A     PA  ++A                   L  N     I +Q+   I I +   A I LTGLF YDI++VF +   VM +VAT +E PVK L P
Sbjct:   23 AALVEEDKNVYLGLFALQLLPSLLIGYKLASFVYFGLLAVSTVYLGSKRMDI---PDETRNPITAAQAFGAPFAASVSLFGVFALLKYTDISVGIAYQYLTTFLGVATSVSVLPPILRSV--------------LPENVVNAPVSAPL-----DTVLAKAFPETWENDDQPLLDFAELAVLVSATTAAFVYVNPAVGLSA-----------------KFLIPNVFAWCIGMQSIGLISISTFPAAAILLTGLFCYDIFWVFGTE--VMMTVATKIEAPVKFLFP 265          
BLAST of EWM21213.1 vs. NCBI_GenBank
Match: gi|397619739|gb|EJK65379.1| (hypothetical protein THAOC_13764 [Thalassiosira oceanica])

HSP 1 Score: 85.8853 bits (211), Expect = 1.621e-14
Identity = 76/288 (26.39%), Postives = 117/288 (40.62%), Query Frame = 0
Query:  107 AQALQEDWPVYLFLIGVQAIPVLAGGLVGGNFLFFWLTACTCVYLGAKRSSAVARAGEIFQAVTTRNAFAAPIAASISLFGTYYLLKNQFDIATVYQLMTTFFGGYCLRDVLISTLLALGLGGSIQSFYAPPPKPIPARRGPFSSPAPPPPSPPASSSSFPPLRDPDEGELDGLKLAATLLSGGVCATYLWGPAAAVAAAGASGGASGAVFLGAISALLAANFITSGIALQAQASIPIKSLKPALIFLTGLFLYDIYFVFFSPGGVMESVATSLEGPVKLLSPRAAVR 394
            A  + ED   Y  +  +Q +P+L  G +  + ++F+  A T VYLG ++ +      E  + V+  NA  AP+ AS S+ G Y LLKN  DI  +Y ++ T FG   + D+ +  L  L  G    +   P PK I  +     + A P                                   +C    W P                  L      +A+N +   + + +  +I + S +   I L GLF YD ++VF S   VM +VAT +E PVK + P   VR
Sbjct:   57 ANRVSEDKFAYALIFALQFMPLLGNGRLE-SLVYFYGVAVTTVYLGGRQETI-----EQAERVSKDNALFAPVFASASIGGLYLLLKNGIDITALYAVVVTLFGAISISDIGVPVLRNLIPGVDFANEEVPLPKAIVQKFKLDEADALPLDGLITLGLG------------------------LLCTAVYWSP------------------LVMEQKFIASNILAWSLGMASLGAISLGSFQTGAILLGGLFFYDAFWVFGSD--VMMTVATKVEAPVKFIFPADTVR 294          
BLAST of EWM21213.1 vs. NCBI_GenBank
Match: gi|546297977|ref|XP_005710376.1| (unnamed protein product [Chondrus crispus] >gi|507106452|emb|CDF40082.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 76.6406 bits (187), Expect = 2.261e-11
Identity = 85/289 (29.41%), Postives = 122/289 (42.21%), Query Frame = 0
Query:  108 QALQEDWPVYLFLIGVQAIP-VLAGGLVGGNFLFFWLTACTCVYLGAKRSSAVARAGEIFQA--VTTRNAFAAPIAASISLFGTYYLLK-NQFDIATVYQLMTTFFGGYCLRDVLISTLL-ALGLGGSIQSFYAPPPKPIPARRGPFSSPAPPPPSPPASSSSFPPLRDPDEGELDGLKLAATLLSGGVCATYLWGPAAAVAAAGASGGASGAVFLGAIS-ALLAANFITSGIALQAQASIPIKSLKPALIFLTGLFLYDIYFVFFSPGGVMESVATSLEGPVKLLSPR 390
            + +    P Y+ L+  QA+P +     V G+  +F  TA   + +G +R+       E FQ+  ++   A AAP AAS  LFG+Y LLK    +I  ++  +TTF G  CL++ L      AL L G           P+P   G    PA                           +L+              GPA A  AA A+  A    +L  +    + +N I  GI  +  + +   S   A   L GLF YDI++VF S   VM SVAT ++ P KLL PR
Sbjct:   85 RGINGTLPFYVALVAAQALPFIFPHSGVAGDLTYFTTTAVAALIIGCRRAPL-----EPFQSQPISKTQAIAAPFAASTFLFGSYLLLKYTTVNIGAIFNGLTTFAGTLCLKEALDPVFHSALSLAGLQDLVLWQQNSPLPTAEGDNIEPA---------------------------RLS-------------LGPALASVAAIATTVA----YLSHVEPTFVFSNMIALGICARVVSLVRPDSFVVAAGLLCGLFFYDIFWVFGSE--VMVSVATQIDSPGKLLFPR 322          
BLAST of EWM21213.1 vs. NCBI_GenBank
Match: gi|168053011|ref|XP_001778932.1| (predicted protein [Physcomitrella patens] >gi|162669686|gb|EDQ56268.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 72.0182 bits (175), Expect = 7.960e-10
Identity = 105/366 (28.69%), Postives = 152/366 (41.53%), Query Frame = 0
Query:   42 FNALYLRRKHQLAPLQPHRARARPL--AFWQRQTEEREVAEEAEEM-----SDDEKEAI--RLQKILDKRLVLAAQALQEDWPVYLFLIGVQAIPVL-AGGLVGGNFLFFWLTACTCVYLGAKRSSAVARAGEIFQAVTTRNAFAAPIAASISLFGTYYLLKNQFDIATVYQLMTTFFGGYCLRDVLISTLLALGLGGSIQSFYAPPPKPIPARRGPFSSPAPPPPSPPASSSSFPPLRDPDEGELDGLKLA-ATLLSGGVCATYLWGPAAAVAAAGASGGASGAVFLGAISALLAANFITSGIALQAQASIPIKSLKPALIFLTGLFLYDIYFVFFSP----GGVMESVATS--LEGPVKLLSPR 390
            FN + L  KH    +  H+ R   L  AF   ++ ER  A+   +      SDDE +A+   ++K +D       +  +E     L L+ V    +L          L+F   A   +Y+G+ RS          Q+VT +   AAP+ ASISLFG Y LL+              FF    +R   IS  L +    ++ S  APP + I            P     +    FP     D+GE   L L  A +L+  V      G AAA+A+       SGA F          NFI   I  +    + + S   A   L+GL LYD+++VF S       VM +VATS   +GP+KL+ P+
Sbjct:  123 FNRIELECKH----ISVHKRRVSLLVPAFSNYRSTERRGAKIQCQAGLKPSSDDENDALVELVKKDVDIDGWQWTKTNKELIAYSLLLVAVPVGTILPQTHFQWSGALYFLFLAVWTIYVGSHRSLGKNPP----QSVTFKQGLAAPLFASISLFGFYTLLR--------------FFPNLDIR-TFISAYLGVAGVVAVASNLAPPLRSI-----------LPNAENVSWRIDFPKWLVEDDGEAVHLTLTPADILATAV------GIAAAIASK-----QSGAPF-------TLNNFIAVCIVTELLQLLSLGSFATAATMLSGLLLYDVFWVFGSSHVFGDNVMVTVATSPVFDGPMKLIFPQ 436          
BLAST of EWM21213.1 vs. NCBI_GenBank
Match: gi|1004135605|gb|KXZ43659.1| (hypothetical protein GPECTOR_83g271 [Gonium pectorale])

HSP 1 Score: 62.7734 bits (151), Expect = 3.425e-7
Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 0
Query:  325 LAANFITSGIALQAQASIPIKSLKPALIFLTGLFLYDIYFVFFSPGGVMESVATSLEGPVKLLSPRAAVRREGRRP 400
             A N +     L+    + + S+   +I L GLF YDI++VF +P  VM SVA + +GP+KLL PRA    +G+RP
Sbjct:  108 FANNVLGLAFCLEGIEHLSLGSVHVGVILLVGLFFYDIFWVFCTP--VMVSVAKNFDGPIKLLFPRAGTLEDGKRP 181          
The following BLAST results are available for this feature:
BLAST of EWM21213.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585101314|gb|EWM21213.1|0.000e+0100.00minor histocompatibility antigen [Nannochloropsis ... [more]
gi|553178503|ref|XP_005852561.1|1.523e-117100.00signal peptide peptidase [Nannochloropsis gaditana... [more]
gi|298708825|emb|CBJ30784.1|1.535e-1731.69minor histocompatibility antigen H13, putative [Ec... [more]
gi|397619739|gb|EJK65379.1|1.621e-1426.39hypothetical protein THAOC_13764 [Thalassiosira oc... [more]
gi|546297977|ref|XP_005710376.1|2.261e-1129.41unnamed protein product [Chondrus crispus] >gi|507... [more]
gi|168053011|ref|XP_001778932.1|7.960e-1028.69predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|1004135605|gb|KXZ43659.1|3.425e-740.79hypothetical protein GPECTOR_83g271 [Gonium pector... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9489rna9489Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications