rna9460, rna9460 (mRNA) Nannochloropsis gaditana

Overview
Namerna9460
Unique Namerna9460
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length516
Alignment locationKK037253.1:342644..343156 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100910g3.5857.mrna
Orig protein idgnl|cribi|Naga_100910g3.5857
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:342644..343156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100910g3gene9181Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9460rna9460-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21246.1cds9429Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9460 ID=rna9460|Name=rna9460|organism=Nannochloropsis gaditana|type=mRNA|length=516bp
ATGCCATTTACGATGGCAAAACCCCTGTCAGCCACCCCACTATCTTCGTC
CTTTGACCCTCCTTTTCTTCGCAAAAGAATCCTCACTCCCAATGATCCCC
CTGTGCGAAGCAAGTTGTTTCCGGAAAAGACAGGCAGGGGGGGAGGGAGG
GAGGGAGGGCAAGGGAGAGGGCGGAGATCTCCCCTCCCTTGGTTCTTGAT
TGGATTGGAAGGACGATCGCCCACCCACACAGCCTTGTTAGGAAGTCGAA
AAAGCATGAAGGAGGATGAGGTGAATGAAGGAACCACACACCCCCTTGTG
GCGGTGGACATTAACCCTAACAGATCTTGTCGGGCCCCGAGGCACGTGAA
GCCATGGCCGGGCGCCGAGGCCGAGAGCCCTCTTCCAGCGGGGTGCGACG
CATTCTGCTCCCCTCCGTTTACCCACGAGACCGTCTCCGGGATAGGGGGG
CGGGGGGAGGGTGCTTGCTCCCCAAAGGATATTCTCGTCCCATGTGCTGC
CTGGTTGTGTCCTTGA
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protein sequence of rna9460

>rna9460-protein ID=rna9460-protein|Name=rna9460|organism=Nannochloropsis gaditana|type=polypeptide|length=170bp
MCTSPYPATHVPPYPWKGGGNNRQGRGSPCPVLGFPRGFSPSLPCLSPPP
SPLPVFPSSLSFLVRCRACMRVVPGGGAMAGMDGGKGVGDKGGDLPRKGG
PRRERKRGKRAVFFHAFESLPEKRGVSPLCANGSRIPPWGDSNLVPPVVV
PGVPPFSARARPMSLLSGGE
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mRNA from alignment at KK037253.1:342644..343156+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9460 ID=rna9460|Name=rna9460|organism=Nannochloropsis gaditana|type=mRNA|length=513bp|location=Sequence derived from alignment at KK037253.1:342644..343156+ (Nannochloropsis gaditana)
ATGTGTACCTCCCCCTATCCGGCCacccacgtccctccctatccttggaa
gggagggggtaaCAACcgacaggggagggggagcccATGTCCTGTGCTCG
GTTTCCCCAGGGGCTTCTCGCCTTCTCTACcgtgcctctctccccctccc
tcccctctccctgtctttccgtcttctctttcctttcttgtgcGGTGTCG
GGCGTGCATGCGTGTTGtccccgggggaggggcaatgGCCGGGATGgacg
gcgggaagggcgtcggagacaagggaggggacctGCCTAGGAAAGGCggg
cccaggagggagaggaagcgagggaagcGTGCTGTGTTCTTTCATGCGTT
CGAATCCTTGCCTGAGAAAAGAGGCGTGAGCCCTCTGTGTGCAAACGGTT
CCAGAATTCCCCCGTGGGGGGACTCGAACCTCGTTCCTCCCGTTGTCGTC
CCGGGCGTTCCCCCCTTTTCGGCCAGGGCGCGGCCCATGTCTCTCCTATC
AGGAGGGGAATGA
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Coding sequence (CDS) from alignment at KK037253.1:342644..343156+

>rna9460 ID=rna9460|Name=rna9460|organism=Nannochloropsis gaditana|type=CDS|length=513bp|location=Sequence derived from alignment at KK037253.1:342644..343156+ (Nannochloropsis gaditana)
ATGTGTACCTCCCCCTATCCGGCCacccacgtccctccctatccttggaa
gggagggggtaaCAACcgacaggggagggggagcccATGTCCTGTGCTCG
GTTTCCCCAGGGGCTTCTCGCCTTCTCTACcgtgcctctctccccctccc
tcccctctccctgtctttccgtcttctctttcctttcttgtgcGGTGTCG
GGCGTGCATGCGTGTTGtccccgggggaggggcaatgGCCGGGATGgacg
gcgggaagggcgtcggagacaagggaggggacctGCCTAGGAAAGGCggg
cccaggagggagaggaagcgagggaagcGTGCTGTGTTCTTTCATGCGTT
CGAATCCTTGCCTGAGAAAAGAGGCGTGAGCCCTCTGTGTGCAAACGGTT
CCAGAATTCCCCCGTGGGGGGACTCGAACCTCGTTCCTCCCGTTGTCGTC
CCGGGCGTTCCCCCCTTTTCGGCCAGGGCGCGGCCCATGTCTCTCCTATC
AGGAGGGGAATGA
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Synonyms
Publications