EWM21265.1, cds9408 (CDS) Nannochloropsis gaditana

Overview
NameEWM21265.1
Unique Namecds9408
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:289900..289979 -
Alignment locationKK037253.1:289524..289670 -
Alignment locationKK037253.1:289153..289285 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21265.1
ProductRibosomal protein/NADH dehydrogenase domain protein
Orig transcript idgnl|cribi|Naga_100538g2.4543.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:289900..289979 -
KK037253.1supercontigKK037253.1:289524..289670 -
KK037253.1supercontigKK037253.1:289153..289285 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR012336Thioredoxin-like_fold
IPR007741Ribosome/NADH_DH
Homology
BLAST of EWM21265.1 vs. NCBI_GenBank
Match: gi|585101417|gb|EWM21265.1| (Ribosomal protein/NADH dehydrogenase domain protein [Nannochloropsis gaditana])

HSP 1 Score: 248.054 bits (632), Expect = 1.920e-83
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0
Query:    1 MGVRPLLRVSKAQATHLFRFITHVEISLNPWSEFRLASTREFWRAISVPRLRKANPKCVINVETHNKKVAPMVAVKYLDGSSQTFEPEKLDVVEIMSDIHQHAHVINAKYEDEGKELEA 119
            MGVRPLLRVSKAQATHLFRFITHVEISLNPWSEFRLASTREFWRAISVPRLRKANPKCVINVETHNKKVAPMVAVKYLDGSSQTFEPEKLDVVEIMSDIHQHAHVINAKYEDEGKELEA
Sbjct:    1 MGVRPLLRVSKAQATHLFRFITHVEISLNPWSEFRLASTREFWRAISVPRLRKANPKCVINVETHNKKVAPMVAVKYLDGSSQTFEPEKLDVVEIMSDIHQHAHVINAKYEDEGKELEA 119          
BLAST of EWM21265.1 vs. NCBI_GenBank
Match: gi|224000992|ref|XP_002290168.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973590|gb|EED91920.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 75.485 bits (184), Expect = 2.268e-15
Identity = 39/112 (34.82%), Postives = 66/112 (58.93%), Query Frame = 0
Query:    7 LRVSKAQATHLFRFITHVEISLNPWSEFRLASTREFWRAISVPRLRKANPKCVINVETHNKKVAPMVAVKYLDGSSQTFEPEKLDVVEIMSDIHQHAHVINAKYEDEGKELE 118
            L+V+K  ++HL ++I  V+IS NP+ + R  S RE  R I+V R R+ANPK  I     +   AP V   ++DG+ + F+ ++    E++ D+ + A  ++  +E EGK +E
Sbjct:    3 LKVTKDMSSHLIKYIRTVDISFNPF-DMRTRSARELLRQINVDRYRRANPKLKIKTNILSTPHAPSVKFAFVDGTDKNFDSKEFLADEMLMDVWRTAMKMDDDFELEGKNVE 113          
BLAST of EWM21265.1 vs. NCBI_GenBank
Match: gi|1072232073|gb|OEU16805.1| (hypothetical protein FRACYDRAFT_186261 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 74.3294 bits (181), Expect = 7.128e-15
Identity = 38/112 (33.93%), Postives = 58/112 (51.79%), Query Frame = 0
Query:    7 LRVSKAQATHLFRFITHVEISLNPWSEFRLASTREFWRAISVPRLRKANPKCVINVETHNKKVAPMVAVKYLDGSSQTFEPEKLDVVEIMSDIHQHAHVINAKYEDEGKELE 118
            ++ +K  ++ LF+++  V+I  NP+   R AS RE WR +   R  KANPK  IN E      AP V  K +D + + F+       EI  D+H     +N ++E  GK L+
Sbjct:    3 IKFTKETSSRLFKYVKTVDIRFNPFDN-RTASAREIWRQMQSTRYYKANPKLKINTEVLGTAAAPEVVFKLIDDTVKRFDSRHYTANEIFFDVHLSLENLNNEFEMSGKSLD 113          
BLAST of EWM21265.1 vs. NCBI_GenBank
Match: gi|1214710417|gb|OWZ21508.1| (hypothetical protein PHMEG_0003923 [Phytophthora megakarya])

HSP 1 Score: 59.6918 bits (143), Expect = 3.003e-9
Identity = 31/105 (29.52%), Postives = 52/105 (49.52%), Query Frame = 0
Query:   14 ATHLFRFITHVEISLNPWSEFRLASTREFWRAISVPRLRKANPKCVINVETHNKKVAPMVAVKYLDGSSQTFEPEKLDVVEIMSDIHQHAHVINAKYEDEGKELE 118
            A ++ RF+    +S + +   R     EF+R ++  + RK NPK  IN ET      P + + +++GS    E    +V EI  ++  H   I  +YE +GK +E
Sbjct:    3 ARNVVRFLKSANVSFSSFDR-RATGACEFYRQLTAEKTRKMNPKAEINQETTLTGTLPTIKLDFINGSKHVMEVPNKNVREIFEEVDFHCSQIETEYEKQGKSIE 106          
BLAST of EWM21265.1 vs. NCBI_GenBank
Match: gi|544209816|ref|XP_005535310.1| (hypothetical protein CYME_CMC090C [Cyanidioschyzon merolae strain 10D] >gi|449015622|dbj|BAM79024.1| hypothetical protein CYME_CMC090C [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 59.3066 bits (142), Expect = 6.340e-9
Identity = 29/94 (30.85%), Postives = 52/94 (55.32%), Query Frame = 0
Query:   16 HLFRFITHVEISLNPWSEFRLASTREFWRAISVPRLRKANPKCVI--NVETHNKKVAPMVAVKYLDGSSQTFEPEKLDVVEIMSDIHQHAHVIN 107
            +LFR I   +++ +P+ ++R  S REF R ++ PR+R+ANP+ V+   V          + + +LDG + T +P  +DV  I  +I  +  V+ 
Sbjct:   16 NLFRAIAKCQVAFDPY-DYRSVSAREFLRRVNSPRVRRANPRLVVEATVRDGGGSGGAELVISFLDGRTLTLQPLDVDVKTIEREIALNIPVLT 108          
BLAST of EWM21265.1 vs. NCBI_GenBank
Match: gi|673036790|ref|XP_008872356.1| (hypothetical protein, variant [Aphanomyces invadans] >gi|673036792|ref|XP_008872357.1| hypothetical protein H310_08416 [Aphanomyces invadans] >gi|574471922|gb|ETV98928.1| hypothetical protein H310_08416 [Aphanomyces invadans] >gi|574471923|gb|ETV98929.1| hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 57.3806 bits (137), Expect = 2.105e-8
Identity = 31/107 (28.97%), Postives = 54/107 (50.47%), Query Frame = 0
Query:   14 ATHLFRFITHVEISLNPWSEFRLASTREFWRAISVPRLRKANPKC--VINVETHNKKVAPMVAVKYLDGSSQTFEPEKLDVVEIMSDIHQHAHVINAKYEDEGKELE 118
            A  + RF+   EIS + +   R     EF+R ++  + +K NPKC  V NV  H K   P++ + +++   + +     DV +I +DI  H   I +  E +GK ++
Sbjct:    3 ARDVIRFLKKAEISFSSFDS-RATGACEFYRQLNATKTKKVNPKCEVVYNVAVHGKS-DPLIKLTFINDKQEKYHVPGRDVRDIFNDIEYHCSQIESDLEAQGKSMD 107          
BLAST of EWM21265.1 vs. NCBI_GenBank
Match: gi|675204551|ref|XP_008911160.1| (hypothetical protein PPTG_15641 [Phytophthora parasitica INRA-310] >gi|566015161|gb|ETI38072.1| hypothetical protein F443_16086 [Phytophthora parasitica P1569] >gi|567952620|gb|ETK78292.1| hypothetical protein L915_15631 [Phytophthora parasitica] >gi|567981279|gb|ETL31722.1| hypothetical protein L916_15527 [Phytophthora parasitica] >gi|568010767|gb|ETL84950.1| hypothetical protein L917_15349 [Phytophthora parasitica] >gi|568040671|gb|ETM38119.1| hypothetical protein L914_15482 [Phytophthora parasitica] >gi|568088530|gb|ETN03387.1| hypothetical protein PPTG_15641 [Phytophthora parasitica INRA-310] >gi|570318895|gb|ETO66843.1| hypothetical protein F444_16071 [Phytophthora parasitica P1976] >gi|570942700|gb|ETP07957.1| hypothetical protein F441_15915 [Phytophthora parasitica CJ01A1] >gi|570973341|gb|ETP36002.1| hypothetical protein F442_15937 [Phytophthora parasitica P10297] >gi|970658135|gb|KUF95936.1| hypothetical protein AM587_10010812 [Phytophthora nicotianae] >gi|970658779|gb|KUF96503.1| hypothetical protein AM588_10006714 [Phytophthora nicotianae])

HSP 1 Score: 56.9954 bits (136), Expect = 3.597e-8
Identity = 30/105 (28.57%), Postives = 53/105 (50.48%), Query Frame = 0
Query:   14 ATHLFRFITHVEISLNPWSEFRLASTREFWRAISVPRLRKANPKCVINVETHNKKVAPMVAVKYLDGSSQTFEPEKLDVVEIMSDIHQHAHVINAKYEDEGKELE 118
            A ++ RF+   ++S + +   R     EF+R ++  + RK NPK  I  +T     AP + + +++GS    E    +V EI  ++  H   I  +YE +GK +E
Sbjct:    3 ARNVVRFLKSAKVSFSSFDR-RATGACEFYRQLTAEKTRKVNPKAEIVYQTSLTGSAPTIKLDFINGSKHLMEVPDKNVREIFEEVDFHCSQIETEYEKQGKTIE 106          
BLAST of EWM21265.1 vs. NCBI_GenBank
Match: gi|301093488|ref|XP_002997590.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262110553|gb|EEY68605.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 56.225 bits (134), Expect = 6.631e-8
Identity = 29/105 (27.62%), Postives = 53/105 (50.48%), Query Frame = 0
Query:   14 ATHLFRFITHVEISLNPWSEFRLASTREFWRAISVPRLRKANPKCVINVETHNKKVAPMVAVKYLDGSSQTFEPEKLDVVEIMSDIHQHAHVINAKYEDEGKELE 118
            A ++ RF+   ++S + +   R     EF+R ++  + RK NPK  I  +T    + P + + ++ GS    E    +V EI  ++  H   I  +YE++GK +E
Sbjct:    3 ARNVVRFLKSAKVSFSSFDR-RATGACEFYRQLTAEKTRKVNPKAEIAHQTSLAGILPTIKLDFISGSKHVMEVPDKNVREIFEEVDFHCSQIETEYENQGKTIE 106          
BLAST of EWM21265.1 vs. NCBI_GenBank
Match: gi|953490765|emb|CEG46419.1| (hypothetical protein PHALS_02822 [Plasmopara halstedii])

HSP 1 Score: 55.4546 bits (132), Expect = 1.498e-7
Identity = 28/105 (26.67%), Postives = 54/105 (51.43%), Query Frame = 0
Query:   14 ATHLFRFITHVEISLNPWSEFRLASTREFWRAISVPRLRKANPKCVINVETHNKKVAPMVAVKYLDGSSQTFEPEKLDVVEIMSDIHQHAHVINAKYEDEGKELE 118
            A +L RF+    +S + + + R     EF+R ++  + RK NPK  I  +       P + +++++GS+Q  E    +V++I  D+      I  +YE+ GK ++
Sbjct:    3 ARNLVRFLKSANVSFSSFDK-RATGACEFYRQLAAEKTRKVNPKAEIAFQPSLTGSLPTIKLEFINGSTQLMEVPDKNVLDIFEDVDFFCSQIETEYEELGKTID 106          
BLAST of EWM21265.1 vs. NCBI_GenBank
Match: gi|397640215|gb|EJK73997.1| (hypothetical protein THAOC_04358 [Thalassiosira oceanica])

HSP 1 Score: 56.9954 bits (136), Expect = 1.598e-7
Identity = 28/84 (33.33%), Postives = 48/84 (57.14%), Query Frame = 0
Query:   35 RLASTREFWRAISVPRLRKANPKCVINVETHNKKVAPMVAVKYLDGSSQTFEPEKLDVVEIMSDIHQHAHVINAKYEDEGKELE 118
            R  S RE  R     RL +ANPK  +  + H++  AP V V ++DG+  TF+ ++    +++ DI + A  ++ ++E EGK +E
Sbjct:  108 RTRSAREVMRQFEAQRLVRANPKLKVKADVHSRPSAPEVKVSFVDGTDLTFDSQEYIAADMLMDIWRAAMKLDDEFELEGKNVE 191          
The following BLAST results are available for this feature:
BLAST of EWM21265.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101417|gb|EWM21265.1|1.920e-83100.00Ribosomal protein/NADH dehydrogenase domain protei... [more]
gi|224000992|ref|XP_002290168.1|2.268e-1534.82predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1072232073|gb|OEU16805.1|7.128e-1533.93hypothetical protein FRACYDRAFT_186261 [Fragilario... [more]
gi|1214710417|gb|OWZ21508.1|3.003e-929.52hypothetical protein PHMEG_0003923 [Phytophthora m... [more]
gi|544209816|ref|XP_005535310.1|6.340e-930.85hypothetical protein CYME_CMC090C [Cyanidioschyzon... [more]
gi|673036790|ref|XP_008872356.1|2.105e-828.97hypothetical protein, variant [Aphanomyces invadan... [more]
gi|675204551|ref|XP_008911160.1|3.597e-828.57hypothetical protein PPTG_15641 [Phytophthora para... [more]
gi|301093488|ref|XP_002997590.1|6.631e-827.62conserved hypothetical protein [Phytophthora infes... [more]
gi|953490765|emb|CEG46419.1|1.498e-726.67hypothetical protein PHALS_02822 [Plasmopara halst... [more]
gi|397640215|gb|EJK73997.1|1.598e-733.33hypothetical protein THAOC_04358 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9438rna9438Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications