EWM21270.1, cds9404 (CDS) Nannochloropsis gaditana

Overview
NameEWM21270.1
Unique Namecds9404
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037253.1:278062..278064 +
Alignment locationKK037253.1:278200..278214 +
Alignment locationKK037253.1:278495..278846 +
Alignment locationKK037253.1:279175..279179 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21270.1
Productsnf2 family helicase
Orig transcript idgnl|cribi|Naga_100467g2.536.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037253.1supercontigKK037253.1:278062..278064 +
KK037253.1supercontigKK037253.1:278200..278214 +
KK037253.1supercontigKK037253.1:278495..278846 +
KK037253.1supercontigKK037253.1:279175..279179 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR000330SNF2_N
IPR027417P-loop_NTPase
Homology
BLAST of EWM21270.1 vs. NCBI_GenBank
Match: gi|585101424|gb|EWM21270.1| (snf2 family helicase [Nannochloropsis gaditana])

HSP 1 Score: 249.21 bits (635), Expect = 1.049e-83
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0
Query:    1 MGMGKTTDWDVVLTTYGTLQQEHVRWEGGRGGGREGGREGGGLFGVRWGRVVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVISEPFQGRAG 124
            MGMGKTTDWDVVLTTYGTLQQEHVRWEGGRGGGREGGREGGGLFGVRWGRVVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVISEPFQGRAG
Sbjct:    1 MGMGKTTDWDVVLTTYGTLQQEHVRWEGGRGGGREGGREGGGLFGVRWGRVVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVISEPFQGRAG 124          
BLAST of EWM21270.1 vs. NCBI_GenBank
Match: gi|1208509017|gb|OWM68962.1| (hypothetical protein CDL15_Pgr025149 [Punica granatum])

HSP 1 Score: 129.798 bits (325), Expect = 2.105e-32
Identity = 63/111 (56.76%), Postives = 74/111 (66.67%), Query Frame = 0
Query:   10 DVVLTTYGTLQQEHVRWEGGRGGGREGGREGGGLFGVRWGRVVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVISEPFQ 120
            DVV+TTYG L  E            E   E GGLF VRW RVVLDEAHTIK+   +   AA ALEA RRW LTGTPIQN L+D++SLLRFLR +PW +  WW K+I +PF+
Sbjct:  542 DVVITTYGILASEF---------SSENAEENGGLFSVRWFRVVLDEAHTIKSSKGQISLAAAALEADRRWCLTGTPIQNSLEDIYSLLRFLRVEPWGNWAWWNKLIQKPFE 643          
BLAST of EWM21270.1 vs. NCBI_GenBank
Match: gi|1040850033|ref|XP_017236672.1| (PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 [Daucus carota subsp. sativus])

HSP 1 Score: 129.028 bits (323), Expect = 3.287e-32
Identity = 62/112 (55.36%), Postives = 74/112 (66.07%), Query Frame = 0
Query:   10 DVVLTTYGTLQQEHVRWEGGRGGGREGGREGGGLFGVRWGRVVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVISEPFQG 121
            DVVLTTYG L  E            E   + GGL+ VRW RVVLDEAHTIKN  ++   AA AL A RRW LTGTPIQN L+D++SLLRFLR +PW    WW K++ +PF+G
Sbjct:  530 DVVLTTYGVLASEFTA---------ENAEDNGGLYSVRWFRVVLDEAHTIKNSKSQISTAAAALIADRRWCLTGTPIQNNLEDIYSLLRFLRVEPWGSWAWWNKLVQKPFEG 632          
BLAST of EWM21270.1 vs. NCBI_GenBank
Match: gi|950954724|ref|XP_014496489.1| (PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 [Vigna radiata var. radiata])

HSP 1 Score: 128.257 bits (321), Expect = 6.164e-32
Identity = 62/112 (55.36%), Postives = 74/112 (66.07%), Query Frame = 0
Query:   10 DVVLTTYGTLQQEHVRWEGGRGGGREGGREGGGLFGVRWGRVVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVISEPFQG 121
            DVV+TTYG L  E            E   + GGLF +RW RVVLDEAHTIK+  ++   AA AL A RRW LTGTPIQN L+DV+SLLRFLR +PW    WW K+I +PF+G
Sbjct:  508 DVVITTYGILASEF---------SSENADDNGGLFSIRWFRVVLDEAHTIKSSKSQVSVAAAALIADRRWCLTGTPIQNSLEDVYSLLRFLRIEPWGHWAWWNKLIQKPFEG 610          
BLAST of EWM21270.1 vs. NCBI_GenBank
Match: gi|1044577676|ref|XP_017425600.1| (PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 [Vigna angularis] >gi|920700897|gb|KOM44122.1| hypothetical protein LR48_Vigan05g172700 [Vigna angularis] >gi|965604859|dbj|BAT92035.1| hypothetical protein VIGAN_07069300 [Vigna angularis var. angularis])

HSP 1 Score: 127.872 bits (320), Expect = 8.572e-32
Identity = 61/112 (54.46%), Postives = 74/112 (66.07%), Query Frame = 0
Query:   10 DVVLTTYGTLQQEHVRWEGGRGGGREGGREGGGLFGVRWGRVVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVISEPFQG 121
            DVV+TTYG L  E            E   + GGLF +RW RVVLDEAHTIK+  ++   AA AL A RRW LTGTPIQN L+D++SLLRFLR +PW    WW K+I +PF+G
Sbjct:  508 DVVITTYGILASEF---------SSENADDNGGLFSIRWFRVVLDEAHTIKSSKSQVSVAAAALIADRRWCLTGTPIQNSLEDIYSLLRFLRIEPWGHWAWWNKLIQKPFEG 610          
BLAST of EWM21270.1 vs. NCBI_GenBank
Match: gi|947073850|gb|KRH22741.1| (hypothetical protein GLYMA_13G320000 [Glycine max])

HSP 1 Score: 127.487 bits (319), Expect = 1.233e-31
Identity = 60/112 (53.57%), Postives = 74/112 (66.07%), Query Frame = 0
Query:   10 DVVLTTYGTLQQEHVRWEGGRGGGREGGREGGGLFGVRWGRVVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVISEPFQG 121
            DVV+TTYG L  E            E   + GGLF +RW RVVLDEAHTIK+  ++   AA AL + RRW LTGTPIQN L+D++SLLRFLR +PW    WW K+I +PF+G
Sbjct:  538 DVVITTYGILASEF---------SSENAEDNGGLFSIRWFRVVLDEAHTIKSSKSQISFAAAALISDRRWCLTGTPIQNSLEDIYSLLRFLRIEPWGHWAWWNKLIQKPFEG 640          
BLAST of EWM21270.1 vs. NCBI_GenBank
Match: gi|1012340617|gb|KYP51831.1| (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 [Cajanus cajan])

HSP 1 Score: 127.102 bits (318), Expect = 1.434e-31
Identity = 61/112 (54.46%), Postives = 74/112 (66.07%), Query Frame = 0
Query:   10 DVVLTTYGTLQQEHVRWEGGRGGGREGGREGGGLFGVRWGRVVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVISEPFQG 121
            DVV+TTYG L  E            E   + GGLF +RW RVVLDEAHTIK+  ++   AA AL A RRW LTGTPIQN L+D++SLLRFLR +PW    WW K+I +PF+G
Sbjct:  515 DVVITTYGILASEF---------SSENAEDNGGLFSIRWFRVVLDEAHTIKSSKSQISMAAAALIADRRWCLTGTPIQNSLEDIYSLLRFLRIEPWGHWAWWNKLIQKPFEG 617          
BLAST of EWM21270.1 vs. NCBI_GenBank
Match: gi|1150090568|ref|XP_020230971.1| (putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 [Cajanus cajan])

HSP 1 Score: 127.102 bits (318), Expect = 1.461e-31
Identity = 61/112 (54.46%), Postives = 74/112 (66.07%), Query Frame = 0
Query:   10 DVVLTTYGTLQQEHVRWEGGRGGGREGGREGGGLFGVRWGRVVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVISEPFQG 121
            DVV+TTYG L  E            E   + GGLF +RW RVVLDEAHTIK+  ++   AA AL A RRW LTGTPIQN L+D++SLLRFLR +PW    WW K+I +PF+G
Sbjct:  509 DVVITTYGILASEF---------SSENAEDNGGLFSIRWFRVVLDEAHTIKSSKSQISMAAAALIADRRWCLTGTPIQNSLEDIYSLLRFLRIEPWGHWAWWNKLIQKPFEG 611          
BLAST of EWM21270.1 vs. NCBI_GenBank
Match: gi|1109249629|ref|XP_019199573.1| (PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 isoform X2 [Ipomoea nil])

HSP 1 Score: 126.716 bits (317), Expect = 2.221e-31
Identity = 61/111 (54.95%), Postives = 73/111 (65.77%), Query Frame = 0
Query:   10 DVVLTTYGTLQQEHVRWEGGRGGGREGGREGGGLFGVRWGRVVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVISEPFQ 120
            DVVLTTYG L  E            E   E GGLF VRW RVVLDEAHTIK+  ++   AA AL A RRW LTGTPIQN ++DV+SLLRFLR +PW    WW +++ +PF+
Sbjct:  549 DVVLTTYGVLASEF---------SSENAEENGGLFSVRWSRVVLDEAHTIKSSKSQISIAASALIAERRWCLTGTPIQNNIEDVYSLLRFLRIEPWGSWAWWNQLVQKPFE 650          
BLAST of EWM21270.1 vs. NCBI_GenBank
Match: gi|571533706|ref|XP_006600435.1| (PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 [Glycine max] >gi|947073849|gb|KRH22740.1| hypothetical protein GLYMA_13G320000 [Glycine max])

HSP 1 Score: 126.716 bits (317), Expect = 2.355e-31
Identity = 60/112 (53.57%), Postives = 74/112 (66.07%), Query Frame = 0
Query:   10 DVVLTTYGTLQQEHVRWEGGRGGGREGGREGGGLFGVRWGRVVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVISEPFQG 121
            DVV+TTYG L  E            E   + GGLF +RW RVVLDEAHTIK+  ++   AA AL + RRW LTGTPIQN L+D++SLLRFLR +PW    WW K+I +PF+G
Sbjct:  538 DVVITTYGILASEF---------SSENAEDNGGLFSIRWFRVVLDEAHTIKSSKSQISFAAAALISDRRWCLTGTPIQNSLEDIYSLLRFLRIEPWGHWAWWNKLIQKPFEG 640          
The following BLAST results are available for this feature:
BLAST of EWM21270.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101424|gb|EWM21270.1|1.049e-83100.00snf2 family helicase [Nannochloropsis gaditana][more]
gi|1208509017|gb|OWM68962.1|2.105e-3256.76hypothetical protein CDL15_Pgr025149 [Punica grana... [more]
gi|1040850033|ref|XP_017236672.1|3.287e-3255.36PREDICTED: putative SWI/SNF-related matrix-associa... [more]
gi|950954724|ref|XP_014496489.1|6.164e-3255.36PREDICTED: putative SWI/SNF-related matrix-associa... [more]
gi|1044577676|ref|XP_017425600.1|8.572e-3254.46PREDICTED: putative SWI/SNF-related matrix-associa... [more]
gi|947073850|gb|KRH22741.1|1.233e-3153.57hypothetical protein GLYMA_13G320000 [Glycine max][more]
gi|1012340617|gb|KYP51831.1|1.434e-3154.46Putative SWI/SNF-related matrix-associated actin-d... [more]
gi|1150090568|ref|XP_020230971.1|1.461e-3154.46putative SWI/SNF-related matrix-associated actin-d... [more]
gi|1109249629|ref|XP_019199573.1|2.221e-3154.95PREDICTED: putative SWI/SNF-related matrix-associa... [more]
gi|571533706|ref|XP_006600435.1|2.355e-3153.57PREDICTED: putative SWI/SNF-related matrix-associa... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9434rna9434Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications