rna9356, rna9356 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9356
Unique Name	rna9356
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2107
Alignment location	KK037253.1:49990..52372 -

Link to JBrowse

Properties


Property Name	Value
Product	fibronectin-binding a domain protein
Orig transcript id	gnl\|cribi\|Naga_100075g20.2875.mrna
Orig protein id	gnl\|cribi\|Naga_100075g20.2875
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037253.1	supercontig	KK037253.1:49990..52372 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100075g20	gene9073	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21341.1	cds9326	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9356	rna9356-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037253.1:49990..52372-
coding sequence from alignment at KK037253.1:49990..52372-

mRNA sequence

>rna9356 ID=rna9356|Name=rna9356|organism=Nannochloropsis gaditana|type=mRNA|length=2107bp
GATGTGTCCAAAATAGGTAACTTGGTCAGTAATTTGGGAACATCCTGTCT
CTCAATGTTGCAGCGTCCCCGGCAGTCCCTCGAGTACGAACAAAGCGAGC
CCTTCCTCGATCTTTTCCGAACCCTTCCGTCTGCAGTCTAACCTCCTCTC
CCTCCGGGACGTGTCCACCGCATTTTATCATGAAGATTTCTTCCGGTGCA
ACACTGATCGTGCACTGGACCAGAAAGAATCGTCTTAATGTCTCTTTTGT
TTCCATGGTTCCTCGTTTTCGCGCTTACTTTCTCTTGTTTCACTTGGTCC
TTGTGTTCCACAAACAGAAACAAGGGCAAGTCTATAACCGATTAATTCAG
TGCAGCTCAATCGTCTCTACAAGATGCTCAACCATTCACTCCAAGTCGGA
CTTAAGCTTATTATACTTTCTACTGCTTTCATAAGTTTTGCGAAAGGAGA
TGCAGCCTCCCATGATGCGATTGCAGACTTTGAGATTGCATCCGGCGAAG
GAAACCACAAGGGTAGTGATGGGCTTTCTTCCTCTACCTTACGACAGAAC
TCTACTCGATATTCGAATTCGCAATTATTACATCGAGTTGATCGGCTGGC
AAACTGTGCGTGGTCCCCGGTCCTGTCCCCCGACGATGAAAAACCTTTCC
TTCCGGATATGTACATACAGTACAACATGCAAGGATTTGTGTTTTCCTCA
AACGCTTTCACTCAGCAACAAGAACTTCAGCAGCAGCGGGAACAAACAGA
CATGCGCCTTGGGCAACATTCGTATTTTACGAAGGACGCTCGAGGCTCTG
CCTTGAAATCATCGCCCAGTCCGCCTCCCCACAAAGAAGAAGAAGTTTAT
CGCATTCGTGGCAAGTTTCCGTACGTACGATATTTCAGTTTTACTGTGTA
CGATGCAAGCTTACAATCGATAAGTACACTTCATGACACGGATATTCGAC
CCTCGTCGGGCAAGAATCCCTTCAATGACATTGAAGTCACAGAAGACAAC
ATGGGAACTTACGAAATATACGTCTCTAAGGATGGCAGTAAGGGATATCC
CAACGAGATGGCGGCGCTTCGACCTGACTCGACGTCGCCATATGCATTGC
TAGCGTTTCGACTTCAACTTTTAGATCCGCGGGCGGGAGAAGATCGTAGT
GGAAAAAATCGAGAATGGGGTTATGTAGACATGCCATTAGTAGAAATATT
AAACCATAGAAATGGAGAATGGGATATTATTCGTCGGTGCTCCGACGAAT
TTCAGGCAAGGACCGAAGAAGTTATTGAAAATTTGGACTTGACATTCAAT
ACATGGTGGCCCAAGAATTTGCAGATTGGAACAGAATGCAACGCAACTGA
ATTCTCATTATTCGATCCTGAACAAAATCCAATCATTCGCCGTGGGGTGG
CTGTCCGAAACGCAAATGAAAACTATATTTTCTGGTGCATGCCGAAGGAG
ATTGGGAAGAAAGACTACATTATCCGGATCACAGGAAAATTACCTAGAAC
ACCTTACGGATTATTCGATGACATTCGAGTGGCGGATACAGCTCGGTACG
ACTCTCGATACGTTTCTTTCACCAGCGCGGATGCGATACCTTTGTATCCT
TCCTATGAAACTATACATGACCGAGATATTTTTAACCATTACTCAACCGA
TCCTTTTGGTTCTGACTGGGATCGAATGTATAATCTAGTGGCAACCTCCG
ACGTAAATCTTGCCAAAAAGTGCGGACTATACAATAGAGCGGAGGATGTG
CTTTTACAGCTTACTCGTTCCCCCACTTTTACTCATTTACCGCATGTCCC
CGCAATCGTCATGCGTCATCTTCTTCCTGGGGGTGGGAAAGAACGACGCG
GAACAGAGGGAGTTGCAAATGTCAACTTGCGTAATGAATGTGAGAGTCCT
ACTGGAAAACTGCTTTGCGATCCCGCGCGCTCCGCGAAGGTGTTGTTACA
AGAATTCTACCCACTTGTACAGATATGGACCTGTGATTACCAAAACCTCA
AACCCGCTCGACTTCATTGAGTGTGAAAAATGCTTGAAGTGTCTCGCATC
TCAAAGCTATTGACGCTAAAGAATAAGAAAGTTATAACAATGTTCAAAAC
TATCTGC

protein sequence of rna9356

>rna9356-protein ID=rna9356-protein|Name=rna9356|organism=Nannochloropsis gaditana|type=polypeptide|length=763bp
MMNRTPLFWLVLLHSIPNCLHAFASFTTRLPMYQPSGSILPVMTTAETTK
LVRPEKPSRLQTLDYTTLALVACELRERLLPGRVENVIQQDDFSLLLQMR
CVDDFTWMLICWQPEAARVCLQRNGPNDSNRNSRGDGQSKRRGGGNGVSS
TLYSLPGQLKGFLQLKTLINVTLPIPGERIMVFEFADRLTVSVPTHKLVI
EVMGRRSNVMLVDGDTDIVLACGYQVSPLKSVRPVSIGQRYTYPPPLTAP
LPPPLPEDQADMEAYESEFIRGITLVPSHSLPKALISAYRGFSPQLVDVM
GSTVGIRNASTTPVGNLSRDVLVRFFRGPVVMWVRLIVMRDPRVVATSEC
GLSLDGKRYTPLLFHPGNGWQPVPSVLKLVEVYYTAFLKRQELRDLQRRG
LNRVQAVQHRLQRTRQEFQRQLDAAAEEEVSKLQTKAELLTTYAYSWKQG
DTECVCPDLDTGEEICIPLKPGNSAADEAQATYGRIRKLKRSVDAIMPLL
QKIDVKVAYVDELESSIQQLGTSARSDEDTPNVLNTRTLSQDLAIMREIA
EELGINCLDGRGGSSTTFFSTILNRLSVPGIEQSSLSNYQNSKNNKRKKK
DKPVRDKNKKIQGKSTDGAKKCAQSMAIQSFRPPSVHSTSNVVVYVGRNS
KQNDYVTFQLARDHELWFHAQGVPGAHCLMRIDPGVEVSDADMQFAADLA
AYFSKARGSGQVPVIWTSPKYLKRVVGGGPGMVHVSKEKVLWGRPSRGEK
IVLENDEDNNTMI

mRNA from alignment at KK037253.1:49990..52372-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9356 ID=rna9356|Name=rna9356|organism=Nannochloropsis gaditana|type=mRNA|length=2383bp|location=Sequence derived from alignment at KK037253.1:49990..52372- (Nannochloropsis gaditana)
GACTCCCACTCTCGCAAAAAACAGACGACGGACTAGAAAAGGGACCACAT
ATAACTAATGATGAATCGCACCCCGCTTTTTTGGCTGGTACTGCTCCACT
CCATTCCAAATTGCCTTCATGCCTTCGCCTCCTTCACTACACGGCTCCCG
ATGTATCAACCCTCAGGATCGATCCTTCCGGTCATGACAACCGCCGAGAC
CACGAAACTAGTAAGGCCTGAAAAGCCCTCGCGTTTGCAAACACTCGATT
ACACAACATTAGCTCTGGTGGCCTGTGAGCTAAGAGAGCGGCTTTTGCCT
GGACGAGTCGAGAATGTTATTCAGCAGGACGATTTCAGCCTGTTGCTTCA
AATGCGCTGTGTCGATGATTTTACCTGGATGCTAATTTGCTGGCAGCCAG
AAGCCGCACGCGTTTGTTTGCAGAGGAATGGACCAAACGACAGTAATAGA
AATAGCCGCGGGGACGGTCAAAGCAAACGAAGGGGAGGAGGCAATGGAGT
GTCGTCCACATTGTACAGCCTACCGGGCCAATTGAAGGGTTTTCTTCAGC
TGAAGACGCTAATAAACGTGACGCTTCCTATACCCGGGGAACGCATTATG
GTGTTTGAGTTTGCGGACCGTCTGACTGTTTCGGTTCCTACACACAAGCT
TGTTATAGAGGTCATGGGACGACGAAGCAACGTTATGCTTGTGGATGGAG
ACACCGACATTGTCCTCGCTTGTGGCTACCAAGTATCACCATTAAAATCT
GTCCGTCCTGTTTCTATCGGCCAGCGATACACTTATCCCCCACCATTGAC
CGCTCCGCTGCCTCCGCCATTGCCCGAAGATCAGGCAGACATGGAGGCAT
ACGAAAGCGAATTTATTCGGGGGATAACCCTTGTCCCATCCCATTCTTTG
CCCAAGGCCCTTATTTCTGCTTATCGAGGATTCAGCCCACAGCTTGTTGA
TGTGATGGGGTCCACAGTAGGCATTCGAAACGCAAGCACAACGCCTGTGG
GAAATCTATCCCGTGATGTGCTTGTACGCTTCTTCCGCGGCCCTGTTGTC
ATGTGGGTGCGACTCATTGTCATGCGAGACCCCAGGGTAGTAGCAACGTC
CGAATGTGGGCTCAGTTTGGACGGAAAGCGCTATACACCACTATTATTCC
ATCCTGGAAACGGGTGGCAGCCTGTGCCATCCGTGCTAAAGCTAGTGGAG
GTTTATTATACGGCTTTTCTAAAGCGACAGGAGCTGAGAGATCTGCAACG
GAGGGGACTCAACAGAGTCCAAGCCGTGCAGCACCGTTTACAGCGAACGC
GACAGGAATTTCAGCGACAGCTCGATGCTGCAGCGGAAGAAGAAGTCAGC
AAATTGCAGACTAAAGCGGAGCTGCTGACGACTTACGCCTACAGCTGGAA
ACAAGGGGATACCGAGTGTGTATGCCCAGACCTGGACACGGGGGAAGAGA
TTTGCATCCCACTGAAACCGGGAAATTCTGCGGCAGATGAAGCACAGGCT
ACTTACGGTCGTATTCGTAAATTAAAGCGAAGTGTGGATGCCATAATGCC
TTTACTGCAGAAAATTGACGTCAAGGTGGCGTATGTGGACGAGCTTGAGT
CTAGCATCCAGCAACTTGGAACCTCGGCTCGCTCAGATGAAGACACACCT
AATGTTCTAAACACTCGAACGCTTAGTCAAGATCTTGCAATCATGCGGGA
AATAGCTGAAGAGCTGGGCATAAATTGTCTTGATGGTAGAGGTGGAAGCT
CCACCACTTTTTTTTCAACAATACTGAATCGGCTTTCTGTTCCTGGAATC
GAGCAGAGTAGCCTGAGCAATTATCAAAATAGCAAAAATAACAAGAGGAA
AAAAAAGGACAAGCCTGTCAGGGATAAAAACAAGAAAATTCAAGGCAAAA
GCACAGATGGTGCTAAGAAGTGTGCACAGAGTATGGCGATCCAATCATTT
CGCCCTCCTTCTGTGCATAGTACTTCAAATGTTGTAGTGTACGTCGGTCG
CAATAGTAAGCAGAACGATTACGTGACTTTTCAACTTGCACGAGATCATG
AACTCTGGTTTCATGCTCAAGGAGTCCCTGGTGCCCACTGTTTAATGCGT
ATTGATCCAGGCGTCGAAGTAAGTGACGCAGATATGCAATTTGCAGCTGA
TTTAGCAGCTTATTTTAGCAAAGCGCGTGGATCAGGCCAAGTGCCTGTTA
TATGGACATCACCAAAATACCTCAAACGTGTAGTTGGTGGTGGACCAGGC
ATGGTTCATGTAAGCAAGGAGAAGGTCTTGTGGGGGAGACCTTCGCGAGG
CGAGAAAATTGTCCTTGAAAATGATGAGGACAATAACACTATGATATGAA
GAAAGCACCATGTCAATTTAGAAATCATTTGCA

Coding sequence (CDS) from alignment at KK037253.1:49990..52372-

>rna9356 ID=rna9356|Name=rna9356|organism=Nannochloropsis gaditana|type=CDS|length=2292bp|location=Sequence derived from alignment at KK037253.1:49990..52372- (Nannochloropsis gaditana)
ATGATGAATCGCACCCCGCTTTTTTGGCTGGTACTGCTCCACTCCATTCC
AAATTGCCTTCATGCCTTCGCCTCCTTCACTACACGGCTCCCGATGTATC
AACCCTCAGGATCGATCCTTCCGGTCATGACAACCGCCGAGACCACGAAA
CTAGTAAGGCCTGAAAAGCCCTCGCGTTTGCAAACACTCGATTACACAAC
ATTAGCTCTGGTGGCCTGTGAGCTAAGAGAGCGGCTTTTGCCTGGACGAG
TCGAGAATGTTATTCAGCAGGACGATTTCAGCCTGTTGCTTCAAATGCGC
TGTGTCGATGATTTTACCTGGATGCTAATTTGCTGGCAGCCAGAAGCCGC
ACGCGTTTGTTTGCAGAGGAATGGACCAAACGACAGTAATAGAAATAGCC
GCGGGGACGGTCAAAGCAAACGAAGGGGAGGAGGCAATGGAGTGTCGTCC
ACATTGTACAGCCTACCGGGCCAATTGAAGGGTTTTCTTCAGCTGAAGAC
GCTAATAAACGTGACGCTTCCTATACCCGGGGAACGCATTATGGTGTTTG
AGTTTGCGGACCGTCTGACTGTTTCGGTTCCTACACACAAGCTTGTTATA
GAGGTCATGGGACGACGAAGCAACGTTATGCTTGTGGATGGAGACACCGA
CATTGTCCTCGCTTGTGGCTACCAAGTATCACCATTAAAATCTGTCCGTC
CTGTTTCTATCGGCCAGCGATACACTTATCCCCCACCATTGACCGCTCCG
CTGCCTCCGCCATTGCCCGAAGATCAGGCAGACATGGAGGCATACGAAAG
CGAATTTATTCGGGGGATAACCCTTGTCCCATCCCATTCTTTGCCCAAGG
CCCTTATTTCTGCTTATCGAGGATTCAGCCCACAGCTTGTTGATGTGATG
GGGTCCACAGTAGGCATTCGAAACGCAAGCACAACGCCTGTGGGAAATCT
ATCCCGTGATGTGCTTGTACGCTTCTTCCGCGGCCCTGTTGTCATGTGGG
TGCGACTCATTGTCATGCGAGACCCCAGGGTAGTAGCAACGTCCGAATGT
GGGCTCAGTTTGGACGGAAAGCGCTATACACCACTATTATTCCATCCTGG
AAACGGGTGGCAGCCTGTGCCATCCGTGCTAAAGCTAGTGGAGGTTTATT
ATACGGCTTTTCTAAAGCGACAGGAGCTGAGAGATCTGCAACGGAGGGGA
CTCAACAGAGTCCAAGCCGTGCAGCACCGTTTACAGCGAACGCGACAGGA
ATTTCAGCGACAGCTCGATGCTGCAGCGGAAGAAGAAGTCAGCAAATTGC
AGACTAAAGCGGAGCTGCTGACGACTTACGCCTACAGCTGGAAACAAGGG
GATACCGAGTGTGTATGCCCAGACCTGGACACGGGGGAAGAGATTTGCAT
CCCACTGAAACCGGGAAATTCTGCGGCAGATGAAGCACAGGCTACTTACG
GTCGTATTCGTAAATTAAAGCGAAGTGTGGATGCCATAATGCCTTTACTG
CAGAAAATTGACGTCAAGGTGGCGTATGTGGACGAGCTTGAGTCTAGCAT
CCAGCAACTTGGAACCTCGGCTCGCTCAGATGAAGACACACCTAATGTTC
TAAACACTCGAACGCTTAGTCAAGATCTTGCAATCATGCGGGAAATAGCT
GAAGAGCTGGGCATAAATTGTCTTGATGGTAGAGGTGGAAGCTCCACCAC
TTTTTTTTCAACAATACTGAATCGGCTTTCTGTTCCTGGAATCGAGCAGA
GTAGCCTGAGCAATTATCAAAATAGCAAAAATAACAAGAGGAAAAAAAAG
GACAAGCCTGTCAGGGATAAAAACAAGAAAATTCAAGGCAAAAGCACAGA
TGGTGCTAAGAAGTGTGCACAGAGTATGGCGATCCAATCATTTCGCCCTC
CTTCTGTGCATAGTACTTCAAATGTTGTAGTGTACGTCGGTCGCAATAGT
AAGCAGAACGATTACGTGACTTTTCAACTTGCACGAGATCATGAACTCTG
GTTTCATGCTCAAGGAGTCCCTGGTGCCCACTGTTTAATGCGTATTGATC
CAGGCGTCGAAGTAAGTGACGCAGATATGCAATTTGCAGCTGATTTAGCA
GCTTATTTTAGCAAAGCGCGTGGATCAGGCCAAGTGCCTGTTATATGGAC
ATCACCAAAATACCTCAAACGTGTAGTTGGTGGTGGACCAGGCATGGTTC
ATGTAAGCAAGGAGAAGGTCTTGTGGGGGAGACCTTCGCGAGGCGAGAAA
ATTGTCCTTGAAAATGATGAGGACAATAACACTATGATATGA

Synonyms

Publications