rna9355, rna9355 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9355
Unique Name	rna9355
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1047
Alignment location	KK037253.1:47686..49992 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100075g21.2873.mrna
Orig protein id	gnl\|cribi\|Naga_100075g21.2873
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037253.1	supercontig	KK037253.1:47686..49992 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100075g21	gene9072	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9355	rna9355-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21339.1	cds9325	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037253.1:47686..49992+
coding sequence from alignment at KK037253.1:47686..49992+

mRNA sequence

>rna9355 ID=rna9355|Name=rna9355|organism=Nannochloropsis gaditana|type=mRNA|length=1047bp
GTTCGTACTCGAGGGACTGCCGGGGACGCTGCAACATTGAGAGACAGGAT
GTTCCCAAATTACTGACCAAGTTACCTATTTTGGACACATCCACTTTTCT
CGAACAGTAGTGCCCCCGCATCGGCGCTCTTAGGTACCGGCAGGCGCCTT
CTTCAGGGCGTTGACGCAGATTTCCTCTCTAATGAACCTCTGCTTTTCGG
TCCACGTACTTCTGGCACTCTTCCAGGCCTTGACTTTCGCGCATGCTTTT
GTTGTGAGGCTCTCAAAATCCTCAGTCCTCGCCCCGCTGGCTTCCACATC
ATCTCCTCCGCCGCCTACTACAACCTCCCCCTCCTCCACTGGCGCAAGTA
AAAAAGCCAGTCTTTCCTCGAACGTCCCTTGGGACCTGAGCGTCGTTATT
AAGAAAGAGGGCTACTCTGATATTCAGGCAGATTTTCGAATACGCTTCGT
GACAGAACCTGGTTACGAGCCTCCTCAAGGCCGAATCTTTGTAGAGCGAG
ACCCGCTGGCACTTATCGATACGGATGAGAAAGGCTTCGCCTTGGGACCT
GCTCCGGCATGGACACTGAGCGAAGACAAGAATGACAGGCAATGGGGTCT
GTGGATCTGGGGGCTTTTCGACGAACCTCTATTCCCGTATCTCTATTTTT
CTCTGCCGGTGCTCGATGACTGCTTGACAGAAGTGGATGAGGAGGGAGAG
AGGAGGAAAGAGCTCCGACCTGTCTTTGGCGGGACCGGTATTCCCGGCAA
TCGTTTGAACTTTCGTTTTAACCACGTGCGACAAGACGGAGCGGTGTCGC
TTTCTGAAGGCCAGCTTACATTCAAGGAGGTGGAGATGCGAAAAGTAGAC
CCGCTGGGGATCGGCGGCGTGGTGAATGTAGGGGATGTGAAGGACGCGGG
GGAGGCTCAACTCCGGCCGGTCTTAATTTAGGCTGTAGAAGCGTGCACGG
CAACGACGGAAGAGCAGAGGCTAGAAACAATTCTGGAAGAAGAAGCTGGT
ATCTCAAGTCTCACTTGTTCGCACCGTATTTCTTCACGTAAATTACT

protein sequence of rna9355

>rna9355-protein ID=rna9355-protein|Name=rna9355|organism=Nannochloropsis gaditana|type=polypeptide|length=548bp
MLNHSLQVGLKLIILSTAFISFAKGDAASHDAIADFEIASGEGNHKGSDG
LSSSTLRQNSTRYSNSQLLHRVDRLANCAWSPVLSPDDEKPFLPDMYIQY
NMQGFVFSSNAFTQQQELQQQREQTDMRLGQHSYFTKDARGSALKSSPSP
PPHKEEEVYRIRGKFPYVRYFSFTVYDASLQSISTLHDTDIRPSSGKNPF
NDIEVTEDNMGTYEIYVSKDGSKGYPNEMAALRPDSTSPYALLAFRLQLL
DPRAGEDRSGKNREWGYVDMPLVEILNHRNGEWDIIRRCSDEFQARTEEV
IENLDLTFNTWWPKNLQIGTECNATEFSLFDPEQNPIIRRGVAVRNANEN
YIFWCMPKEIGKKDYIIRITGKLPRTPYGLFDDIRVADTARYDSRYVSFT
SADAIPLYPSYETIHDRDIFNHYSTDPFGSDWDRMYNLVATSDVNLAKKC
GLYNRAEDVLLQLTRSPTFTHLPHVPAIVMRHLLPGGGKERRGTEGVANV
NLRNECESPTGKLLCDPARSAKVLLQEFYPLVQIWTCDYQNLKPARLH

mRNA from alignment at KK037253.1:47686..49992+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9355 ID=rna9355|Name=rna9355|organism=Nannochloropsis gaditana|type=mRNA|length=2307bp|location=Sequence derived from alignment at KK037253.1:47686..49992+ (Nannochloropsis gaditana)
GATGTGTCCAAAATAGGTAACTTGGTCAGTAATTTGGGAACATCCTGTCT
CTCAATGTTGCAGCGTCCCCGGCAGTCCCTCGAGTACGAACAAAGCGAGC
CCTTCCTCGATCTTTTCCGAACCCTTCCGTCTGCAGtctaacctcctctc
cctccgggaCGTGTCCACCGCATTTTATCATGAAGATTTCTTCCGGTGCA
ACACTGATCGTGCACTGGACCAGAAAGAATCGTCTTAATGTCTCTTTTGT
TTCCATGGTTCCTCGTTTTCGCGCTTACTTTCTCTTGTTTCACTTGGTCC
TTGTGTTCCACAAACAGAAACAAGGGCAAGTCTATAACCGATTAATTCAG
TGCAGCTCAATCGTCTCTACAAGATGCTCAACCATTCACTCCAAGTCGGA
CTTAAGCTTATTATACTTTCTACTGCTTTCATAAGGTATGAGTCTCTACT
AAAAGAAAATCTTTTCATGGGAAATTTACTCACAAGCACTTTGGAAAGGG
AAATAACATATCTACTTAACGGCCGTCCTCTACACATCTAAGCAGTTGAT
TGTGCGTAAAATGTGAACTTTTTCCCTACTTATTCACTTCATAATCTTTA
ATTATATTTCATTGGACTTGGGCCCCATCACTTAGTTTTGCGAAAGGAGA
TGCAGCCTCCCATGATGCGATTGCAGACTTTGAGATTGCATCCGGCGAAG
GAAACCACAAGGGTAGTGATGggctttcttcctctaccTTACGACAGAAC
TCTACTCGATATTCGAATTCGCAATTATTACATCGAGTTGATCGGCTGGC
AAACTGTGCGTGGTCCCCGGTCCTGTCCCCCGACGATGAAAAACCTTTCC
TTCCGGATATGTACATACAGTACAACATGCAAGGATTTGTGTTTTCCTCA
AACGCTTTCACTCAGCAACAAGAACttcagcagcagcgggaACAAACAGA
CATGCGCCTTGGGCAACATTCGTATTTTACGAAGGACGCTCGAGGCTCTG
CCTTGAAATCATCGCCCAGTCCGCCTCCCcacaaagaagaagaagtttAT
CGCATTCGTGGCAAGTTTCCGTACGTACGATATTTCAGTTTTACTGTGTA
CGATGCAAGCTTACAATCGATAAGTACACTTCATGACACGGATATTCGAC
CCTCGTCGGGCAAGAATCCCTTCAATGACATTGAAGTCACAGAAGACAAC
ATGGGAACTTACGAAATATACGTCTCTAAGGATGGCAGTAAGGGATATCC
CAACGAGATGGCGGCGCTTCGACCTGACTCGACGTCGCCATATGCATTGC
TAGCGTTTCGACTTCAACTTTTAGATCCGCGGGCGGGAGAAGATCGTAGT
GGAAAAAATCGAGAATGGGGTTATGTAGACATGCCATTAGTAGAAATATT
AAACCATAGAAATGGAGAATGGGATATTATTCGTCGGTGCTCCGACGAAT
TTCAGGCAAGGACCGAAGAAGTTATTGAAAATTTGGACTTGACATTCAAT
ACATGGTGGCCCAAGAATTTGCAGATTGGAACAGAATGCAACGCAACTGA
ATTCTCATTATTCGATCCTGAACAAAATCCAATCATTCGCCGTGGGGTGG
CTGTCCGAAACGCAAATGAAAACTATATTTTCTGGTGCATGCCGAAGGAG
ATTGGGAAGAAAGACTACATTATCCGGATCACAGGAAAATTACCTAGAAC
ACCTTACGGATTATTCGATGACATTCGAGTGGCGGATACAGCTCGGTACG
ACTCTCGATACGTTTCTTTCACCAGCGCGGATGCGATACCTTTGTATCCT
TCCTATGAAACTATACATGACCGAGATATTTTTAACCATTACTCAACCGA
TCCTTTTGGTTCTGACTGGGATCGAATGTATAATCTAGTGGCAACCTCCG
ACGTAAATCTTGCCAAAAAGTGCGGACTATACAATAGAGCGGAGGATGTG
CTTTTACAGCTTACTCGTTCCCCCACTTTTACTCATTTACCGCATGTCCC
CGCAATCGTCATgcgtcatcttcttcctgggggtgggaaagaacGACGCG
GAACAGAGGGAGTTGCAAATGTCAACTTGCGTAATGAATGTGAGAGTCCT
ACTGGAAAACTGCTTTGCGATCCCGCGCGCTCCGCGAAGGTGTTGTTACA
AGAATTCTACCCACTTGTACAGATATGGACCTGTGATTACCAAAACCTCA
AACCCGCTCGACTTCATTGAGTGTGAAAAATGCTTGAAGTGTCTCGCATC
TCAAAGCTATTGACGCTAAAGAATAAGAAAGTTATAACAATGTTCAAAAC
TATCTGC

Coding sequence (CDS) from alignment at KK037253.1:47686..49992+

>rna9355 ID=rna9355|Name=rna9355|organism=Nannochloropsis gaditana|type=CDS|length=3294bp|location=Sequence derived from alignment at KK037253.1:47686..49992+ (Nannochloropsis gaditana)
ATGCTCAACCATTCACTCCAAGTCGGACTTAAGCTTATTATACTTTCTAC
TGCTTTCATAAGTTTTGCGAAAGGAGATGCAGCCTCCCATGATGCGATTG
CAGACTTTGAGATTGCATCCGGCGAAGGAAACCACAAGGGTAGTGATGgg
ctttcttcctctaccTTACGACAGAACTCTACTCGATATTCGAATTCGCA
ATTATTACATCGAGTTGATCGGCTGGCAAACTGTGCGTGGTCCCCGGTCC
TGTCCCCCGACGATGAAAAACCTTTCCTTCCGGATATGTACATACAGTAC
AACATGCAAGGATTTGTGTTTTCCTCAAACGCTTTCACTCAGCAACAAGA
ACttcagcagcagcgggaACAAACAGACATGCGCCTTGGGCAACATTCGT
ATTTTACGAAGGACGCTCGAGGCTCTGCCTTGAAATCATCGCCCAGTCCG
CCTCCCcacaaagaagaagaagtttATCGCATTCGTGGCAAGTTTCCGTA
CGTACGATATTTCAGTTTTACTGTGTACGATGCAAGCTTACAATCGATAA
GTACACTTCATGACACGGATATTCGACCCTCGTCGGGCAAGAATCCCTTC
AATGACATTGAAGTCACAGAAGACAACATGGGAACTTACGAAATATACGT
CTCTAAGGATGGCAGTAAGGGATATCCCAACGAGATGGCGGCGCTTCGAC
CTGACTCGACGTCGCCATATGCATTGCTAGCGTTTCGACTTCAACTTTTA
GATCCGCGGGCGGGAGAAGATCGTAGTGGAAAAAATCGAGAATGGGGTTA
TGTAGACATGCCATTAGTAGAAATATTAAACCATAGAAATGGAGAATGGG
ATATTATTCGTCGGTGCTCCGACGAATTTCAGGCAAGGACCGAAGAAGTT
ATTGAAAATTTGGACTTGACATTCAATACATGGTGGCCCAAGAATTTGCA
GATTGGAACAGAATGCAACGCAACTGAATTCTCATTATTCGATCCTGAAC
AAAATCCAATCATTCGCCGTGGGGTGGCTGTCCGAAACGCAAATGAAAAC
TATATTTTCTGGTGCATGCCGAAGGAGATTGGGAAGAAAGACTACATTAT
CCGGATCACAGGAAAATTACCTAGAACACCTTACGGATTATTCGATGACA
TTCGAGTGGCGGATACAGCTCGGTACGACTCTCGATACGTTTCTTTCACC
AGCGCGGATGCGATACCTTTGTATCCTTCCTATGAAACTATACATGACCG
AGATATTTTTAACCATTACTCAACCGATCCTTTTGGTTCTGACTGGGATC
GAATGTATAATCTAGTGGCAACCTCCGACGTAAATCTTGCCAAAAAGTGC
GGACTATACAATAGAGCGGAGGATGTGCTTTTACAGCTTACTCGTTCCCC
CACTTTTACTCATTTACCGCATGTCCCCGCAATCGTCATgcgtcatcttc
ttcctgggggtgggaaagaacGACGCGGAACAGAGGGAGTTGCAAATGTC
AACTTGCGTAATGAATGTGAGAGTCCTACTGGAAAACTGCTTTGCGATCC
CGCGCGCTCCGCGAAGGTGTTGTTACAAGAATTCTACCCACTTGTACAGA
TATGGACCTGTGATTACCAAAACCTCAAACCCGCTCGACTTCATTGAATG
CTCAACCATTCACTCCAAGTCGGACTTAAGCTTATTATACTTTCTACTGC
TTTCATAAGTTTTGCGAAAGGAGATGCAGCCTCCCATGATGCGATTGCAG
ACTTTGAGATTGCATCCGGCGAAGGAAACCACAAGGGTAGTGATGggctt
tcttcctctaccTTACGACAGAACTCTACTCGATATTCGAATTCGCAATT
ATTACATCGAGTTGATCGGCTGGCAAACTGTGCGTGGTCCCCGGTCCTGT
CCCCCGACGATGAAAAACCTTTCCTTCCGGATATGTACATACAGTACAAC
ATGCAAGGATTTGTGTTTTCCTCAAACGCTTTCACTCAGCAACAAGAACt
tcagcagcagcgggaACAAACAGACATGCGCCTTGGGCAACATTCGTATT
TTACGAAGGACGCTCGAGGCTCTGCCTTGAAATCATCGCCCAGTCCGCCT
CCCcacaaagaagaagaagtttATCGCATTCGTGGCAAGTTTCCGTACGT
ACGATATTTCAGTTTTACTGTGTACGATGCAAGCTTACAATCGATAAGTA
CACTTCATGACACGGATATTCGACCCTCGTCGGGCAAGAATCCCTTCAAT
GACATTGAAGTCACAGAAGACAACATGGGAACTTACGAAATATACGTCTC
TAAGGATGGCAGTAAGGGATATCCCAACGAGATGGCGGCGCTTCGACCTG
ACTCGACGTCGCCATATGCATTGCTAGCGTTTCGACTTCAACTTTTAGAT
CCGCGGGCGGGAGAAGATCGTAGTGGAAAAAATCGAGAATGGGGTTATGT
AGACATGCCATTAGTAGAAATATTAAACCATAGAAATGGAGAATGGGATA
TTATTCGTCGGTGCTCCGACGAATTTCAGGCAAGGACCGAAGAAGTTATT
GAAAATTTGGACTTGACATTCAATACATGGTGGCCCAAGAATTTGCAGAT
TGGAACAGAATGCAACGCAACTGAATTCTCATTATTCGATCCTGAACAAA
ATCCAATCATTCGCCGTGGGGTGGCTGTCCGAAACGCAAATGAAAACTAT
ATTTTCTGGTGCATGCCGAAGGAGATTGGGAAGAAAGACTACATTATCCG
GATCACAGGAAAATTACCTAGAACACCTTACGGATTATTCGATGACATTC
GAGTGGCGGATACAGCTCGGTACGACTCTCGATACGTTTCTTTCACCAGC
GCGGATGCGATACCTTTGTATCCTTCCTATGAAACTATACATGACCGAGA
TATTTTTAACCATTACTCAACCGATCCTTTTGGTTCTGACTGGGATCGAA
TGTATAATCTAGTGGCAACCTCCGACGTAAATCTTGCCAAAAAGTGCGGA
CTATACAATAGAGCGGAGGATGTGCTTTTACAGCTTACTCGTTCCCCCAC
TTTTACTCATTTACCGCATGTCCCCGCAATCGTCATgcgtcatcttcttc
ctgggggtgggaaagaacGACGCGGAACAGAGGGAGTTGCAAATGTCAAC
TTGCGTAATGAATGTGAGAGTCCTACTGGAAAACTGCTTTGCGATCCCGC
GCGCTCCGCGAAGGTGTTGTTACAAGAATTCTACCCACTTGTACAGATAT
GGACCTGTGATTACCAAAACCTCAAACCCGCTCGACTTCATTGA

Synonyms

Publications