rna9347, rna9347 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9347
Unique Name	rna9347
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1426
Alignment location	KK037253.1:26373..27303 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100357g1.4704.mrna
Orig protein id	gnl\|cribi\|Naga_100357g1.4704
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037253.1	supercontig	KK037253.1:26373..27303 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100357g1	gene9064	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21360.1	cds9317	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9347	rna9347-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037253.1:26373..27303-
coding sequence from alignment at KK037253.1:26373..27303-

mRNA sequence

>rna9347 ID=rna9347|Name=rna9347|organism=Nannochloropsis gaditana|type=mRNA|length=1426bp
CCGGCGAGCAGTATCTTCTGCTGTTGTTCGTATCATGAGGCTCCACGTTG
CTTGTCAGTCTTTGATGATGCTCGTCAATCACCCACTTATCGTCCTGTAA
GCTCGACACCTGACTTCTAATTTAATCTTTTACTATGTGCTTTCCCGCGC
AAAACATTTTCGTAGGATCGACCTTTCTCCCCCGCAGTCCATCGCACCTC
CCGTGCTTGGCCCTTTTCTGTTTCATCGACAAAACTTATTCCTTGAGTTT
TGAATAGGGATATTGTATATTCAGGAACCAAAATTACCGCTAGAGATGGC
GAATGCCTTGATTTTTGCAGCACGAGATGGGGATGTCACGGAGGTGCGAT
GGCGGCTCGAAGCCAAAGCTACTCTAGCTACCTACGCAGATAGTCACGGG
CAGACAGCCCTGATGTGGGCTGCGGTTCAGGGGCACACCGAGGTGGCGCG
CTGTCTATTGGATTTCGGGGCAGCTCTAGACGGAACGGAATGGGAAATGG
GGCGCACCGCCTTGTACATGGCAGCAGGGCGGGGCCACGTGACTTTCGTT
GAACTCCTCCTCTCGAGAGGGGCCAACCCTAGCCTACGCCGTACAGGCGG
GCGTACCCCATTGGGAATAGCGGCCTACAATGGGCATAATGAAGTGGTTA
AGTTGCTGCTGAGTCATGAGGGCTGCGATGTTGACGGTCGGGATGATCAG
GGGTGTACCCCTTTGTGGCAGGCGGCGCGCAACGGACGAACGCAGGCCTT
GCGCCTGCTCCTGGCCGCTGGGGCGGACCCTTCCATTCCCGGGGAACAGG
GATGGCAGGCTATCGACGTTGCACGGGAGAAGGACCGGGCGGAATGCATT
TCCTTGCTAGAAGGGGAAGAGCGGGCATACGTGCTTTCCAAAATCCGGCG
CCTATGGCGGGAGGAGCACCTGCAGGCAGGATTGGAGCGAGGCAGAGTCG
TGAGACGGGGGAAAGCCCCACCTTTTCTGGTGAATGGCATGTCGAAAGGT
GAGGGAGCTGCGAACAGCAACCTTGTGCTGCTGAGGGGGGGTGGTGCGGG
CTCGGCGAGGGGGTTGGTTCATGGAGAGGGAGGTAACGGTGGGGGCAATA
ATAAAGTCGGGAGCGACCGGGTGCGGGGAGATGGTGGCGCTGCTAGCTCG
TCACAAGAAGCGTGCCAAGGGCTCCCCCGGGTGGAGACGGAAGAAGACGA
TGAACACGGTCTTAAATCCCGCGCCCCGGACAGCGCCAAGGCGGCCGCCC
ACTACGTCGTCGAACAGATGCGATTTGACGTCTTCATCATCATGCGCGAC
CTGCTGGCCCTCTCCTCCACTTCCCTGTCAGCGCCATTTGGATAAGGTTG
CGGTGACCATTCATTGAGAATTGGTGTCTGAAGTTGTCGAAAAGAAAAGC
AAACTACGTCTTCGATTGACATACCG

protein sequence of rna9347

>rna9347-protein ID=rna9347-protein|Name=rna9347|organism=Nannochloropsis gaditana|type=polypeptide|length=142bp
LLRQHPPRPPLEHPRLPLRLLLLRQHPPRPPLEHPRLPLRLFLLRQHPPR
PPLEHLRLLLRPLLPSIPRQSRMRLPRPQRMHLPSLCTHRRPTPSPTRRW
SERAADACDEATKQAILKCVRRGHLISWAQEVCFFDAIDLGE

mRNA from alignment at KK037253.1:26373..27303-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9347 ID=rna9347|Name=rna9347|organism=Nannochloropsis gaditana|type=mRNA|length=931bp|location=Sequence derived from alignment at KK037253.1:26373..27303- (Nannochloropsis gaditana)
TCCTACTACGGCAGCACCCACCGCGGCCCCCACTGGAGCACCCACGCCTG
CCCCTACGCCTGCTCCTACTACGGCAGCACCCACCGCGGCCCCCACTGGA
GCACCCACGCCTGCCCCTACGCCTGTTCCTACTACGGCAGCACCCACCGC
GGCCCCCACTGGAGCACCTACGCCTGCTCCTACGCCCGCTTCTTCCGTCG
ATCCCCAGGCAGTCACGGATGCGCCTACCCCGGCCCCAACGGATGCACCT
ACCGAGTCTGTGTACACACCGCCGCCCTACACCAAGCCCGACGAGGAGAT
GGTCGGAAAGAGCGGCCGACGCTTGCGACGAGGCAACTAAACAAGCGATT
TTGAAATGTGTACGGCGTGGTCATTTGATATCATGGGCACAAGAAGTCTG
CTTTTTTGATGCAATCGATTTAGGAGAGTGAAGTGCTGCATAGAGTAAGC
AGAGTATGCGTAAGTCCAAAATAGCGAGCGTGATATGCGGGTTGAACGAG
AGAGACCAAAGCAATGAGAAAGGAGGGCAGAATCATGTGAGATTCGTGCC
TTTAGAATTTATCGAGATCGAATACACCGCTACTAGGAATGCAGTTGATT
GCCCAAGTGAAAGACACTGAAATGACCCGAAAGATGCTTCTGTCGGGATA
AAAGCGTCCGGAAGCGTGCTCGGAGTCTGCAATCTCTTAGTTTCCTTATT
TATCTTCCACAGTAAGGTACGAGTGAGGAGAGCAACTTCCTGGTGACGTC
GGCTGCGTGTTTGGGAAGACCTACTGGTTGTATTTTAAGCTACCATAAGA
GGGTAGCTGTGAAAGGAACTCAGTGGGGAAGTCAAACTTCAGGTCACTAA
AAGCAAAAAAATGAATTAAGGCTTCAAAAGAGAAAAGCTACTGCGATTCT
AATCTGCATTGCGCGGACCTTGTAAGCAACC

Coding sequence (CDS) from alignment at KK037253.1:26373..27303-

>rna9347 ID=rna9347|Name=rna9347|organism=Nannochloropsis gaditana|type=CDS|length=429bp|location=Sequence derived from alignment at KK037253.1:26373..27303- (Nannochloropsis gaditana)
CTACTACGGCAGCACCCACCGCGGCCCCCACTGGAGCACCCACGCCTGCC
CCTACGCCTGCTCCTACTACGGCAGCACCCACCGCGGCCCCCACTGGAGC
ACCCACGCCTGCCCCTACGCCTGTTCCTACTACGGCAGCACCCACCGCGG
CCCCCACTGGAGCACCTACGCCTGCTCCTACGCCCGCTTCTTCCGTCGAT
CCCCAGGCAGTCACGGATGCGCCTACCCCGGCCCCAACGGATGCACCTAC
CGAGTCTGTGTACACACCGCCGCCCTACACCAAGCCCGACGAGGAGATGG
TCGGAAAGAGCGGCCGACGCTTGCGACGAGGCAACTAAACAAGCGATTTT
GAAATGTGTACGGCGTGGTCATTTGATATCATGGGCACAAGAAGTCTGCT
TTTTTGATGCAATCGATTTAGGAGAGTGA

Synonyms

Publications