EWM21427.1, cds9257 (CDS) Nannochloropsis gaditana

Overview
NameEWM21427.1
Unique Namecds9257
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:289512..289528 +
Alignment locationKK037252.1:289749..289784 +
Alignment locationKK037252.1:289946..290186 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21427.1
Productdna-directed rna polymerase ii subunit rpb11-a
Orig transcript idgnl|cribi|Naga_100147g17.4608.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:289512..289528 +
KK037252.1supercontigKK037252.1:289749..289784 +
KK037252.1supercontigKK037252.1:289946..290186 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005515protein binding
GO:0046983protein dimerization activity
GO:0003677DNA binding
GO:0003899DNA-directed 5'-3' RNA polymerase activity
Vocabulary: INTERPRO
TermDefinition
IPR009025RBP11-like_dimer
IPR008193RNA_pol_Rpb11_13-16kDa_CS
Homology
BLAST of EWM21427.1 vs. NCBI_GenBank
Match: gi|585101655|gb|EWM21427.1| (dna-directed rna polymerase ii subunit rpb11-a [Nannochloropsis gaditana])

HSP 1 Score: 204.912 bits (520), Expect = 5.536e-67
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0
Query:    1 MNEPKRADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQVGSEGVRE 97
            MNEPKRADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQVGSEGVRE
Sbjct:    1 MNEPKRADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQVGSEGVRE 97          
BLAST of EWM21427.1 vs. NCBI_GenBank
Match: gi|553190928|ref|XP_005855294.1| (DNA-directed RNA polymerase II subunit RPB11 [Nannochloropsis gaditana CCMP526] >gi|422293772|gb|EKU21072.1| DNA-directed RNA polymerase II subunit RPB11 [Nannochloropsis gaditana CCMP526] >gi|585101654|gb|EWM21426.1| dna-directed rna polymerase ii subunit rpb11-a [Nannochloropsis gaditana])

HSP 1 Score: 191.43 bits (485), Expect = 2.566e-61
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 0
Query:    1 MNEPKRADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQV 90
            MNEPKRADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQ 
Sbjct:    1 MNEPKRADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQA 90          
BLAST of EWM21427.1 vs. NCBI_GenBank
Match: gi|397616203|gb|EJK63876.1| (hypothetical protein THAOC_15445 [Thalassiosira oceanica])

HSP 1 Score: 107.071 bits (266), Expect = 5.707e-28
Identity = 46/78 (58.97%), Postives = 65/78 (83.33%), Query Frame = 0
Query:    2 NEPKRADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQT 79
            N P+R+D++ L + E+K E++   + K+AN+GT  +NKEDHT+GNL+RMQLLRD QVKFAGY+HPHPL+++I L+VQT
Sbjct:    3 NRPERSDAFLLGDDEEKIEYQ--PDTKVANAGTFTLNKEDHTVGNLLRMQLLRDPQVKFAGYMHPHPLVNRIHLKVQT 78          
BLAST of EWM21427.1 vs. NCBI_GenBank
Match: gi|224007319|ref|XP_002292619.1| (probable dna-directed RNA polymerase II 13.6 kDa polypeptide [Thalassiosira pseudonana CCMP1335] >gi|220971481|gb|EED89815.1| probable dna-directed RNA polymerase II 13.6 kDa polypeptide [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 104.76 bits (260), Expect = 4.198e-27
Identity = 47/97 (48.45%), Postives = 69/97 (71.13%), Query Frame = 0
Query:    1 MNEPKRADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQVGSEGVRE 97
            MN P+R+ ++ L + E+K E++   + K++N+GT   NKEDHT+ NL+RMQLLRD  VKFAGY+HPHPLIHKI L++QT    ++ P +  S  + +
Sbjct:    1 MNAPERSSAFLLDDDEEKIEYQ--PDTKVSNAGTFTFNKEDHTVANLLRMQLLRDPAVKFAGYMHPHPLIHKIHLKIQTTTSQVA-PAETLSAAIED 94          
BLAST of EWM21427.1 vs. NCBI_GenBank
Match: gi|301093050|ref|XP_002997374.1| (DNA-directed RNA polymerase II subunit J [Phytophthora infestans T30-4] >gi|262110772|gb|EEY68824.1| DNA-directed RNA polymerase II subunit J [Phytophthora infestans T30-4])

HSP 1 Score: 104.375 bits (259), Expect = 6.020e-27
Identity = 50/90 (55.56%), Postives = 64/90 (71.11%), Query Frame = 0
Query:    1 MNEPKRADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQV 90
            MN P R+DSY L EG +K  ++   + K++N+G   I +EDHTMGNLIRMQLLRD  V F+GY HPHPLIH I +RVQT D   S+P++ 
Sbjct:    1 MNAPNRSDSYLLPEGAQKVTYE--KDTKISNAGKFTILREDHTMGNLIRMQLLRDPNVTFSGYRHPHPLIHDITVRVQTND--ASSPVEA 86          
BLAST of EWM21427.1 vs. NCBI_GenBank
Match: gi|695445565|ref|XP_009534261.1| (hypothetical protein PHYSODRAFT_523164 [Phytophthora sojae] >gi|348669578|gb|EGZ09400.1| hypothetical protein PHYSODRAFT_523164 [Phytophthora sojae])

HSP 1 Score: 103.605 bits (257), Expect = 1.074e-26
Identity = 50/90 (55.56%), Postives = 64/90 (71.11%), Query Frame = 0
Query:    1 MNEPKRADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQV 90
            MN P R+DSY L EG +K  ++   + K++N+G   I +EDHTMGNLIRMQLLRD  V F+GY HPHPLIH I +RVQT D   S+P++ 
Sbjct:    1 MNAPNRSDSYLLPEGAQKVTYE--KDTKISNAGKFTILREDHTMGNLIRMQLLRDPNVMFSGYRHPHPLIHDITVRVQTND--ASSPVEA 86          
BLAST of EWM21427.1 vs. NCBI_GenBank
Match: gi|675187787|ref|XP_008902778.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|566028370|gb|ETI51281.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567965674|gb|ETK91144.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567994387|gb|ETL44546.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568023665|gb|ETL97718.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568054072|gb|ETM50876.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568097103|gb|ETN11847.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570332056|gb|ETO80004.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570955982|gb|ETP21046.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|570991121|gb|ETP48969.1| hypothetical protein, variant [Phytophthora parasitica P10297] >gi|970628471|gb|KUF76077.1| DNA-directed RNA polymerase II subunit J [Phytophthora nicotianae] >gi|970656111|gb|KUF94168.1| hypothetical protein AM588_10007596 [Phytophthora nicotianae])

HSP 1 Score: 103.605 bits (257), Expect = 1.198e-26
Identity = 50/90 (55.56%), Postives = 64/90 (71.11%), Query Frame = 0
Query:    1 MNEPKRADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQV 90
            MN P R+DSY L EG +K  ++   + K++N+G   I +EDHTMGNLIRMQLLRD  V F+GY HPHPLIH I +RVQT D   S+P++ 
Sbjct:    1 MNAPNRSDSYLLPEGAQKVTYE--KDTKISNAGKFTILREDHTMGNLIRMQLLRDPNVTFSGYRHPHPLIHDIVVRVQTND--ASSPVEA 86          
BLAST of EWM21427.1 vs. NCBI_GenBank
Match: gi|953500651|emb|CEG38360.1| (dna-directed rna polymerase ii subunit j [Plasmopara halstedii])

HSP 1 Score: 103.219 bits (256), Expect = 1.628e-26
Identity = 50/90 (55.56%), Postives = 64/90 (71.11%), Query Frame = 0
Query:    1 MNEPKRADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQV 90
            MN P R+DSY L EG +K  ++   + K++N+G   I +EDHTMGNLIRMQLLRD  V F+GY HPHPLIH I +RVQT D   S+P++ 
Sbjct:    1 MNAPNRSDSYLLPEGAQKVTYE--KDTKISNAGKFTILREDHTMGNLIRMQLLRDPNVTFSGYRHPHPLIHDIIVRVQTND--ASSPVEA 86          
BLAST of EWM21427.1 vs. NCBI_GenBank
Match: gi|1214706624|gb|OWZ18140.1| (DNA-directed RNA polymerase II subunit J [Phytophthora megakarya])

HSP 1 Score: 103.219 bits (256), Expect = 1.711e-26
Identity = 50/90 (55.56%), Postives = 64/90 (71.11%), Query Frame = 0
Query:    1 MNEPKRADSYRLSEGEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQV 90
            MN P R+DSY L EG +K  ++   + K++N+G   I +EDHTMGNLIRMQLLRD  V F+GY HPHPLIH I +RVQT D   S+P++ 
Sbjct:    1 MNAPNRSDSYLLPEGAQKVTYE--KDTKISNAGKFTILREDHTMGNLIRMQLLRDPNVTFSGYRHPHPLIHDIIVRVQTND--ASSPVEA 86          
BLAST of EWM21427.1 vs. NCBI_GenBank
Match: gi|1072235891|gb|OEU20619.1| (hypothetical protein FRACYDRAFT_224004 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 100.523 bits (249), Expect = 2.710e-25
Identity = 48/99 (48.48%), Postives = 67/99 (67.68%), Query Frame = 0
Query:    1 MNEPKRADSYRLSE--GEKKCEWKDSANEKMANSGTLVINKEDHTMGNLIRMQLLRDKQVKFAGYIHPHPLIHKIELRVQTLDRALSTPMQVGSEGVRE 97
            MN P+R  S+ L E  GE K  + D    K+ N+GT   NKEDHT+GNL RMQLLRD  V+FAGY+HPHPL++ I L++QT +  ++ P++V S  + +
Sbjct:    1 MNAPERTASFLLDEDSGEVKIVYSDDT--KVTNAGTFRFNKEDHTIGNLFRMQLLRDPSVRFAGYLHPHPLVYYINLKIQTNNSTVA-PVEVLSSAIED 96          
The following BLAST results are available for this feature:
BLAST of EWM21427.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101655|gb|EWM21427.1|5.536e-67100.00dna-directed rna polymerase ii subunit rpb11-a [Na... [more]
gi|553190928|ref|XP_005855294.1|2.566e-6198.89DNA-directed RNA polymerase II subunit RPB11 [Nann... [more]
gi|397616203|gb|EJK63876.1|5.707e-2858.97hypothetical protein THAOC_15445 [Thalassiosira oc... [more]
gi|224007319|ref|XP_002292619.1|4.198e-2748.45probable dna-directed RNA polymerase II 13.6 kDa p... [more]
gi|301093050|ref|XP_002997374.1|6.020e-2755.56DNA-directed RNA polymerase II subunit J [Phytopht... [more]
gi|695445565|ref|XP_009534261.1|1.074e-2655.56hypothetical protein PHYSODRAFT_523164 [Phytophtho... [more]
gi|675187787|ref|XP_008902778.1|1.198e-2655.56hypothetical protein, variant [Phytophthora parasi... [more]
gi|953500651|emb|CEG38360.1|1.628e-2655.56dna-directed rna polymerase ii subunit j [Plasmopa... [more]
gi|1214706624|gb|OWZ18140.1|1.711e-2655.56DNA-directed RNA polymerase II subunit J [Phytopht... [more]
gi|1072235891|gb|OEU20619.1|2.710e-2548.48hypothetical protein FRACYDRAFT_224004 [Fragilario... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9287rna9287Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications