rna9281, rna9281 (mRNA) Nannochloropsis gaditana

Overview
Namerna9281
Unique Namerna9281
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1716
Alignment locationKK037252.1:276005..277130 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100147g10.4610.mrna
Orig protein idgnl|cribi|Naga_100147g10.4610
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:276005..277130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100147g10gene9001Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9281rna9281-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21429.1cds9251Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9281 ID=rna9281|Name=rna9281|organism=Nannochloropsis gaditana|type=mRNA|length=1716bp
TCTCTCAATACACAGATTGGGCCTCGTTTCCTAAGATAGCTCGCGGCCAG
TGTAAGGCGTAAGGCACACTGCCTCATTGGAGGGAGCTGCGATGGCTCTC
GAGTACACTGACGAGCAGCAAATGCTCACCGACTTGACCAAGCCCCGTAT
CCTTCTTATGGGCCCCCGTCGCAGTGGAAAAACCAGCATTTTACGCGTCG
TTTTCCAAAAAATGCCTCCCCACGAAACTTTGTTTCTGGAGAGTACCCAC
GCCGTCGACATCCGCTTGGCCAACAACAACCCCTTTCTGCAGTTTCAAAT
CTGGGATTTCCCCGGAGATTTTTTTTTCTATCGTGTGAGCCGTAACGGAG
GGGAGGGAGGGGGAGGGGGAAGGGAATTGGGCGGGAGCATGACCCAGGAG
GGAGAAGGGGAGGGTCCGAAAGAGGGAGAGCTTCTGGACGAAGTCGGCGT
CTTCGGCGTCCCCGCAGCCTTGGTCTTCGTCTTGGATGCACAGGACGAGC
CCTACCACGAGGCCTTGACCCGTCTCGTGGACCTGGTGGCCCGGGGCCAG
AGCGTGAACCCGTCGCTACATGTGGTCGTTTTCATCCACAAGGTGGACGG
AGACCTCTTCCTTTCGGACGAGCACAAGGTCGACTGCCAGCGTGACGTCC
AACACCGGATCGCCCAGGAGCTCCGCGACGCCTCCCTTGAGCACGTGGAG
GTTTCATGTTTTCTCACCTCGATTTACGACCACTCGATCTTCGAGGCCTT
TTCCAAGATCGTCCAGCGCCTTACTCACCAGCTGCCCGTGATGGAGAATC
TGCTCAACTACCTAATCAGCGCCTGCAAGATGGAGAAATCTTTCCTCTTC
GACGTGGTCAGCCGCCTTTATCTGGCCACGGACTCGAATCCAGTTGACAT
GCAGACGTACGAGATGTGCGTGGATATGATCGACGTGGTCGTTGACGTCT
CCTGTATCTATGGTGTCAAATACGACGCGGAGGGGGAGGCGCAGGGCCCA
GTCTACGACTCAGACTCCTCCTCGACGATCCACCTTAGCAATGGCATGGT
CCTCTACCTCCGAGAAGTGGACGACTATCTCGCCTTTGTCGGACTGATGC
GGGCGGAAAATTTTCAAAAGAAAGGCCTGATTGATTTTAACATTGACTGC
CTGAAACGTTCGTTAGGGCGTCTCTCAAGCGAGGGTGGAAGTGGGGGAGG
TGGGAAAGGACATGTTCACGAAGAAAAGAGAAACATCATGAGCGGCGCGT
CTCGCAAAGGTACTCCCGATCCCTACCAGAGAATAAGGAATGGGCCAGCG
TCGATGAGCGACTTATTAGAAATAAAGTAAAAACATATCTTCGACACCGC
AAATTACTCTGCAACTCATGAAATATCGAGTCGGAAGGCTTATGATACAA
TAATGTTGATTCAGACAGCTTATTATAACGATGCTATGTATCTTAAGGTT
GACGCGGCAACAGTTTGCCCACCGGATGCGTGACCTGGTTTGCTCGATGT
TCTATGACTGTATTGTTGTAGTACAGCGTCTCACTTCCTGACACTCTCTG
CGACATGGACACAGTCACTGTACATACAACTTATGTATCTGCGACTGACA
CTGCTACGACACACGTTGTCAAGAATGCAAGGATACGTTTCCATGTCGTC
GAACGTACGACAACAGACATGAAGAAAAGCATTTTCCGCAAAGAAAAGAA
ATGAAAAAATGTTTGA
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protein sequence of rna9281

>rna9281-protein ID=rna9281-protein|Name=rna9281|organism=Nannochloropsis gaditana|type=polypeptide|length=204bp
MRDRELATRDNKIAVNQIITECGTSCDTTHQNIHTKVTYISFHAHTEATA
QESKKREVMISTFSLATLLLLGLCTTQVAARGYMRTMDAAAYVRDDFNAS
VAMPLRVKPGRVYEFSTPADTDDDHFVNIQCPQPKKTQKKGFLTYLSYVN
SFPDTPVYVYQLGDDYNDNQGAMYSARDEPGYGSLLPLFCSNGVLTVAFN
YEGT
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mRNA from alignment at KK037252.1:276005..277130+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9281 ID=rna9281|Name=rna9281|organism=Nannochloropsis gaditana|type=mRNA|length=1126bp|location=Sequence derived from alignment at KK037252.1:276005..277130+ (Nannochloropsis gaditana)
ACTCACCATGGATGCGAGACAGAGAACTAGCCACCAGGGATAACAAGATA
GCAGTGAATCAGATAATAACTGAATGCGGCACCTCTTGCGATACGACGCA
CCAGAACATTCACACAAAAGTCACATACATCTCTTTTCATGCCCATACTG
AAGCAACTGCACAGGAAAGCAAAAAGCGTGAAGTCATGATCTCCACGTTT
TCGCTGGCcacgcttctccttcttggacTCTGCACCACTCAGGTCGCTGC
ACGTGGGTACATGAGGACGATGGACGCGGCGGCCTACGTTCGGGATGACT
TCAATGCCTCGGTCGCCATGCCTTTGCGAGTGAAACCTGGCCGGGTGTAT
GAATTTAGCACACCCGCAGATACCGACGATGACCATTTTGTCAATATTCA
GTGCCCGCAGCCCAAGAAAACACAAAAGAAAGGCTTTTTAACTTATCTCA
GCTACGTTAATAGCTTTCCGGACACCCCTGTCTACGTTTATCAACTCGGC
GATGACTATAACGACAATCAGGGAGCAATGTACAGCGCTCGAGATGAGCC
TGGTTACGGgtctctgcttcctctcttctgcAGCAACGGTGTGCTTACCG
TTGCCTTCAACTACGAGGGTACCTAAATGGTTCTTTtcgagaggggaaag
cccGTCATGCGCTCAATGTCCTTTCAAGCTGGCTTCAGCCTTCATGCGAA
AGACAACATCGTTGTCAAAAGACTCGCCATGGCGCATATGTATTGTGTTT
CAGGGGCGTTGTTAACGCTCTACTTTAATGTGTTCCCTGTGGGAGTTTGT
TTTCGCGTGACAGCCTTTTGTGTTGTAGGAACACCTTTCACAAGCTTATA
TTGGGATGCAAAACTTTAATTGAAGTGAGGAACGAATCAGAGGCTGGTAG
ATTGTAGTGAGAATATGGCTCAGTGAGTAGATGAAAGAAGAGGCCAAAAA
TGAAGAGCAAACCGAGAAGGCCGTGTATGCGTACAATTCTTTCACTGTCA
ATGCCCGATGTTCTACGACTGTGTTGTTGTAGTAGAGCATCTCACTTCCT
GAAACCCTCTGCGACTTAGATAAAGTCTCTGTGAATAAAACTTATGGATC
TGCGAGTCACATGGTACAAGCCACTT
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Coding sequence (CDS) from alignment at KK037252.1:276005..277130+

>rna9281 ID=rna9281|Name=rna9281|organism=Nannochloropsis gaditana|type=CDS|length=615bp|location=Sequence derived from alignment at KK037252.1:276005..277130+ (Nannochloropsis gaditana)
ATGCGAGACAGAGAACTAGCCACCAGGGATAACAAGATAGCAGTGAATCA
GATAATAACTGAATGCGGCACCTCTTGCGATACGACGCACCAGAACATTC
ACACAAAAGTCACATACATCTCTTTTCATGCCCATACTGAAGCAACTGCA
CAGGAAAGCAAAAAGCGTGAAGTCATGATCTCCACGTTTTCGCTGGCcac
gcttctccttcttggacTCTGCACCACTCAGGTCGCTGCACGTGGGTACA
TGAGGACGATGGACGCGGCGGCCTACGTTCGGGATGACTTCAATGCCTCG
GTCGCCATGCCTTTGCGAGTGAAACCTGGCCGGGTGTATGAATTTAGCAC
ACCCGCAGATACCGACGATGACCATTTTGTCAATATTCAGTGCCCGCAGC
CCAAGAAAACACAAAAGAAAGGCTTTTTAACTTATCTCAGCTACGTTAAT
AGCTTTCCGGACACCCCTGTCTACGTTTATCAACTCGGCGATGACTATAA
CGACAATCAGGGAGCAATGTACAGCGCTCGAGATGAGCCTGGTTACGGgt
ctctgcttcctctcttctgcAGCAACGGTGTGCTTACCGTTGCCTTCAAC
TACGAGGGTACCTAA
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Synonyms
Publications