rna9253, rna9253 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9253
Unique Name	rna9253
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1068
Alignment location	KK037252.1:207600..212087 +

Link to JBrowse

Properties


Property Name	Value
Product	WD40-repeat-containing protein
Orig transcript id	gnl\|cribi\|Naga_100019g16.468.mrna
Orig protein id	gnl\|cribi\|Naga_100019g16.468
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037252.1	supercontig	KK037252.1:207600..212087 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100019g16	gene8975	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9253	rna9253-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21446.1	cds9223	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037252.1:207600..212087+
coding sequence from alignment at KK037252.1:207600..212087+

mRNA sequence

>rna9253 ID=rna9253|Name=rna9253|organism=Nannochloropsis gaditana|type=mRNA|length=1068bp
GCACTCAAGCATAGAACAATCGGAATACGATTTAACACCACCGTCTCCCA
GGGAGCTTCTCGCCGAGGCGTTACACGCGACATTTGAGCGATGCCGGCAA
CTTCCTTCTTGCTCCTTTCCCGCCGCAGCAAGTTTTCAAAATACTCCGGC
TCGACTCATCGGATACATGTAATCAACTCACGGCAGCATGGGTGCGGGCA
AGAAAGCTCGTGCCAAAGAGCGCAAGACGGGAAAGCTGGCTATGGCTGCA
CAGGCGGAATTGACCGCGAAGGCAGTGGCACTCCTCCCATCAGGCATGGA
AAACCTTGGAGTATTCGACACCTTGAGCGAGGTACCTTTGGAAAACGACA
CCTCAAATGGGCCTACAAATACGGTTCATCAGCCCATGTCCAGCAGCGAC
CAAGAAGCGCCAAATCTGCACCACCGCCAGGGATGCGATCAGCATGGACC
TGCCGTACAGATCGTCTACCACACGCGGTCAACTTTACCTCCCTCATGGA
AGGAGCCCTTATTCTCTCTTTTTAAATCTAACATGAAAGAGCAGTATGAG
AGCAATTGGGGCTACCGAGAGGCGGAAAAAAGAAGCGAGATTTTTTCGCA
AGAGTCTCGGTACCTTATTGCCGTCCAGACTTCTCCAGGAGACGGCGAGG
CGCAGGGTGAGGGCACGCCGGTGGGTTTCGTGCACATCCGCTATGTTCTG
GATAGAGACGAAGAGATTCCAACAGCAGTTTTGTACGTATACGAGATTCA
GCTGGCTCCAAGCGTGCAACGGCGAGGATTAGGTGCTCGCATGATGAGCG
TTGTAGAAAGCATGGCGGTAAAATTGAAAATGAGAAAAATAAAGCTTACG
GTTTTCAAAAGCAACGGTGCAGCCCTCGCCTTTTATCTCAATAAATTGGG
ATACGATGTTGATGGGACGTCGCCGAGTCAACACAAAATTTTGGGTGAGT
GTTATGAGATCCTTTCTAAAGATGTGGCTGAGGAAGACAAGAAATTGGCT
GCTTCTTGAGCGGCCTCCTGTCTCAGGACTCGACGACTGATAGAATAAGT
AAATTTCTGGCAAGTTCC

protein sequence of rna9253

>rna9253-protein ID=rna9253-protein|Name=rna9253|organism=Nannochloropsis gaditana|type=polypeptide|length=603bp
MKHRVKDCHTNVLQLLENRRRHGETGATQRALESWAERYSLVHAQAHYIS
LPRSTKSTIATCFSPDGNMLASTHGDHSVKLVCYHTRRVLRVLVGHPRTP
WTVKFHPRSPRLLASGCIGGQVRIWDAESGHCLHRAALDLPIISLSFHPS
TAGTQILAIATFHSIWLWPYQTCARPYNEWQTERLLRCVCFPPPQGRHIL
VGLSNDTRTAPTMMQRHSEDNESGGERDRGAGTTPAGSPKTFHLFCWDFD
AEKAMVPRARRTPMAPMRGRPGRGDEEVGEGSAPPVVMRHLYSSPLGRPR
PLLEKAVLYNDGGMDVSACGRFLVTCAQFQRHDLILGSDSSEAWGGRERA
QECGGSDGDAWRGRFERDDRRGDGDGLALGPGDVFSLPHLVKLSLLPFLR
DEGDEENGDVERVRSTRVHRGRREQEAEAGGPAAGVNEDTSEAVPSWYDA
PIAAVEETDRKWDRKEAREREAEAVSTVGYRYQGQRQGYLAPILAARPLR
GVSLGEITSVKLSPSGSLVMLGYGGARAVPGSRGAGGGHTMVEVYETERM
GRVRSVRSGEDEDVNIARFHPIPAHGFVYGTKQGGLCVFATPRGSGPPHT
DEG

mRNA from alignment at KK037252.1:207600..212087+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9253 ID=rna9253|Name=rna9253|organism=Nannochloropsis gaditana|type=mRNA|length=4488bp|location=Sequence derived from alignment at KK037252.1:207600..212087+ (Nannochloropsis gaditana)
GAGACGGTGGTGTTAAATCGTATTCCGATTGTTCTATGCTTGAGTGCGGG
ATGTGTAACAAAGTAAACTTCATTCCGCAGTACAGGCGGTGGGCACCTCT
TGGTGTGCTTTAAGACGTAGGGCTCTAGAAACAGCAGAGTAAACGAGGGC
TCGAGAAAcaagcaggaaaagaaaaactCTACGAAGCCCGAACTGCGTAG
TACACTTTTAGCGTTTCTGCACTGACAAAAATCAACTCGGGTCCCCTTTT
CATAATCAGTATTGTGTAGCATCATGAAGCGTGCAGCTCGGGCCTCCCTG
CTTTTCAAGGTTCCTGAAGCGCGAGGGAAGTTGTCAAGTGTTCCAGGATG
TTGACAGCCTATTAGTGATGGACGACGTGACAGCAATGAAAGTTCCGAAA
ATATGTTTCTATGTCTTTCCGGCTCCTTTGCACTCTTTCCCGGGGAAAAC
TTACATGCACTGATCACGCGCCCTTTGAAAATGTCGCCCTCAGCTGTCTC
AGTGTGATCAGTCCCGTCGCCTCTTTCGTGATGAGACCATCTCGTCGACA
TTTTAATAGATTTGTTTCCACGATTCACAGAAAATTTGTGTGAAGAAAGA
GTACGTTTGTCATTAAATGTGCCTTGTCCTCAAGATTCTGGCGTTGTAGA
CAAATGTTTGATGGCTGGCCTCACCCGGAGGCGGGCCGTTCCACTGCAAA
TAGTTTCTGACTAGTTGTGCGCAACATCTGGCATATGAAGCTGGTAAAGA
AAAAGCAACATGCTTTTCTGATGGAATAAGCGCTAAGCGTGCGACACATG
TTTGCGAAGTATGAATGGACCTCATATAAATGTGACCGGCTGGGCAGTAT
TCGCCAGAGACTGCTTTTTTACTTGTGGGCGCAAGAGGCGATCTTCTTTC
TGCCCCGCTTACAATATATCTACCAGTAGCTCATTTTTATAAACAAAAAA
ATGCAATTGACGGCAGAAATGGCAGTAGGGGTAACAACACCTGTCGCTTT
GACACCCGAGGAAGATGTGACGAGCATCGCTCATGAGGTAAAAATCGAAA
ATGAGCACCATTAGCTACAGTCGCCATTTGCATGTCTGACGacatttttt
cttttacAGGTAATCGAAGGAGTTATAGGCGCCTACTCGTCGTACGACAC
AGCTGATGCGGGGGACTGGTCTGATCGGATAGGCGCAAATACGGTTGAAG
CTCTGACAGCCCACTtcgaaaggggaaaagaaagacgtTATCGCTTTACA
GGTTCGTTGAATGGGACGAGATCGTGGCTTGGTTGTGAATCTGAAGAGGA
CGCACACTGATGCCATCGACTAATCGAAAACTTGGATGCATTCGCGTTTC
TGAAACATGCAGTGACTGTGACTCTCGTGCAGCACGGTGAAGGCATCAGT
GCCTGTAGTGCTGCGGCATGGAATCCAGAAACAGATTTTGTCGTCAGAGT
TTCCTGGCAAAATCAGGCCATAACCTGCCTGGTGGTGGTTTTCGCCCTGG
CCTGGTGAAGAATATACACATAGATTTATGCAGTCCAAGTTACACAATGC
TGTCTTACTTTCCATGCGGGGGGTGTTATCCTGAATACGTTTCAAATAAT
ATGCACACTTCTTGCACAGAAACATTTTTAATTAAGGGCTTTTTAAAGCG
ACGAGACTATGTCAGgacttggagggagaaaccTCGTCTGATGATCAGAC
ACACATGTAAAACCCTCTGGAGTTCCAAGTATGTACTAGTCAAGGGTAGG
GCGATCAAAAATTGATCAGTACGCTGGATAGGACATCATCTTCTGTAGGA
AATGAGAAACgctgaggggaaaaaaaactccgctctttcctccatcgGCC
GGAACGGAACGTATCCACGTTGTGGACCCAGAGAGAATCCCAACATGGCA
CGTCAAAAGATCACATTTTTCTATCACGACAACCCCTCGACATTCTTAAA
TCGGAAATTGCCAGCTTTTGCCTGGACCGTGGAGGTATTCTTCCGTATGG
GCCGTGCGTCATCATCGCCGCGGGCGAggccctccgccgctttTTCCTCA
ACGCAGCGCGGCTCAAGTTCCTCTGATGAAACTCTAACCTGCGAACCATA
TGCGTCCGCAACAGCACAAAATTTCCAACGCCAGTGCAGGTGCATTTTCG
GAAAGTCGATGCAAGTGCGCTAAAACCCCAAGTGTGCCGCTCCTAGCTTG
CTGGCTACAGTCGTCGCCCACGGCAACGTGCCATATCCTTTCGCCAAGCA
TAGAAAAGAGGGCCCCAAGCACACGGCTACCGCAGCATAAGCATTAGGTT
ACGATTGGAAAACTAAATATAAGCGGCTGAGACTTCGGAAAAGGGTTGGC
TCGTGGATTTCTAGGACGCAACAGAGGGACAAGTGGAAAATCGAAGAGGA
CCGTATGAAACATCGAGTAAAAGACTGCCACACAAACGTGCTGCAGTTGC
TGGAGAATCGTCGTCGGCATGGAGAGACAGGGGCAACACAGGTGAGATGA
AGATTGAGGCTGGAATCAGTCGCCGTGCTACTCGCCCGATAGCTTTGTAT
CCTTATGTAGATCTCTCGCCTTCGCTTATACTGCGTAAGCACCTTACCCt
gcaccttctccatcccgtGCTTCCCATGCACCCTACAGCGAGCCCTCGAA
AGCTGGGCCGAGAGATATAGTCTTGTCCATGCACAAGCGCACTATATTTC
CTTACCCCGATCGACGAAATCCACCATTGCTACTTGTTTCTCTCCGGATG
GCAACATGCTCGCCTCCACTCACGGGGATCACAGCGTCAAACTCGTCTGC
TACCATACCCGCCGCGTCCTTCGCGTCCTTGTCGGACACCCACGTACCCC
CTGGACTGTTAAGTTTCACCCCCGGAGCCCACGCCTACTAGCGTCTGGCT
GCATCGGGGGCCAGGTCAGGATATGGGACGCGGAGTCGGGCCACTGCCTA
CACCGAGCCGCCCTCGACCTTCCcatcatctccctctccttccacccgaG
CACGGCCGGCACACAGATCCTCGCGATCGCCACCTTCCACAGCATTTGGC
TTTGGCCCTATCAAACCTGCGCACGGCCCTACAACGAGTGGCAAAccgag
cgcctcctccggtgcgtctgcttccccccaccccagGGCCGGCACATCCT
GGTCGGCCTTAGCAACGACACCAGGACCGCACCAACAATGATGCAGCGAC
ATTCGGAGGACAACGAGagcggaggggagcgggaTCGCGGAGCAGGCACC
ACCCCCGCGGGCTCTCCCAAGACCTTCCACCTCTTTTGCTGGGACTTCGA
CGCGGAGAAAGCCATGGTGCCGCGTGCCCGCCGAACCCCCATGGCCCCCA
TGCGAGGGCGGCCGGgcagaggagatgaggaggtgggagagggcagcgcc
ccccccgttgTCATGCGGCACTTGTACTCCTCGCCGTTGGGGCGACCACG
CCCCCTTTTGGAGAAGGCCGTCCTGTACAACGACGGGGGCATGGACGTTT
CTGCCTGCGGGCGATTCTTGGTCACTTGTGCCCAATTTCAGCGCCACGAT
CTGATTCTGGGATCGGACAGCAGTgaggcgtggggagggagggaaagggc
tcaGGAATGCGGGGGCTCGGACGGCGATGCGTGGCGAGGCCGCTTCGAGA
GGGACGACAggcgcggcgacggcgacgggCTTGCGTTGGGCCCAGGGGAc
gttttctccctcccgcatctGGTgaagctttccctccttccgttcctGCG
GGatgagggggatgaggagaaTGGGGACGTCGAAAGGGTGAGGAGCACGC
GCGTGCAcagggggcggcgggagcaggaggcggaggccgggggacCGGCC
GCCGGAGTAAATGAAGACACCAGTGAGGCTGTCCCCAGTTGGTACGATGC
TCCCATTgcagcggtggaggagacggaccgGAAATgggacagaaaggagg
cgcgggagcgCGAGGCGGAAGCTGTGTCGACGGTAGGATACCGTTATCAA
GGACAGAGACAGGGGTACCTGGCCCCCATCCTCGCAGCCCGACCCTTGCG
GGGCGTCTCATTGGGCGAGATCACTTCCGTCAAACTCTCGCCTTCTGGGT
CCCTGGTCATGCTCGGGTACGGGGGCGCGCGGGCGGTGCCCGGGTCgcgg
ggggccggggggggtcaCACTATGGTCGAGGTGTACGAGACGGAGCGGAT
GGGCAGGGTGCGGTCCGTGAGGTctggcgaggacgaggacgtgaatATCG
CACGCTTTCACCCCATCCCCGCCCATGGCTTTGTGTACGGCACCAAGCAA
GGAGGGCTCTGCGTCTTCGCGACGCCGAGAGGATCGGGCCCGCCGCACAC
GGACGAGGGGTGATtgtgggagggcgtgaaggaCAATTGCGGGGGATGTA
GGCACATCACTGTACGTAATATAGAACCAGAGCAGCGAACGCAGCGACTC
ATTGCAATTACAATATTTACCTGTTATTGTCGTTTTAT

Coding sequence (CDS) from alignment at KK037252.1:207600..212087+

>rna9253 ID=rna9253|Name=rna9253|organism=Nannochloropsis gaditana|type=CDS|length=3624bp|location=Sequence derived from alignment at KK037252.1:207600..212087+ (Nannochloropsis gaditana)
ATGAAACATCGAGTAAAAGACTGCCACACAAACGTGCTGCAGTTGCTGGA
GAATCGTCGTCGGCATGGAGAGACAGGGGCAACACAGCGAGCCCTCGAAA
GCTGGGCCGAGAGATATAGTCTTGTCCATGCACAAGCGCACTATATTTCC
TTACCCCGATCGACGAAATCCACCATTGCTACTTGTTTCTCTCCGGATGG
CAACATGCTCGCCTCCACTCACGGGGATCACAGCGTCAAACTCGTCTGCT
ACCATACCCGCCGCGTCCTTCGCGTCCTTGTCGGACACCCACGTACCCCC
TGGACTGTTAAGTTTCACCCCCGGAGCCCACGCCTACTAGCGTCTGGCTG
CATCGGGGGCCAGGTCAGGATATGGGACGCGGAGTCGGGCCACTGCCTAC
ACCGAGCCGCCCTCGACCTTCCcatcatctccctctccttccacccgaGC
ACGGCCGGCACACAGATCCTCGCGATCGCCACCTTCCACAGCATTTGGCT
TTGGCCCTATCAAACCTGCGCACGGCCCTACAACGAGTGGCAAAccgagc
gcctcctccggtgcgtctgcttccccccaccccagGGCCGGCACATCCTG
GTCGGCCTTAGCAACGACACCAGGACCGCACCAACAATGATGCAGCGACA
TTCGGAGGACAACGAGagcggaggggagcgggaTCGCGGAGCAGGCACCA
CCCCCGCGGGCTCTCCCAAGACCTTCCACCTCTTTTGCTGGGACTTCGAC
GCGGAGAAAGCCATGGTGCCGCGTGCCCGCCGAACCCCCATGGCCCCCAT
GCGAGGGCGGCCGGgcagaggagatgaggaggtgggagagggcagcgccc
cccccgttgTCATGCGGCACTTGTACTCCTCGCCGTTGGGGCGACCACGC
CCCCTTTTGGAGAAGGCCGTCCTGTACAACGACGGGGGCATGGACGTTTC
TGCCTGCGGGCGATTCTTGGTCACTTGTGCCCAATTTCAGCGCCACGATC
TGATTCTGGGATCGGACAGCAGTgaggcgtggggagggagggaaagggct
caGGAATGCGGGGGCTCGGACGGCGATGCGTGGCGAGGCCGCTTCGAGAG
GGACGACAggcgcggcgacggcgacgggCTTGCGTTGGGCCCAGGGGAcg
ttttctccctcccgcatctGGTgaagctttccctccttccgttcctGCGG
GatgagggggatgaggagaaTGGGGACGTCGAAAGGGTGAGGAGCACGCG
CGTGCAcagggggcggcgggagcaggaggcggaggccgggggacCGGCCG
CCGGAGTAAATGAAGACACCAGTGAGGCTGTCCCCAGTTGGTACGATGCT
CCCATTgcagcggtggaggagacggaccgGAAATgggacagaaaggaggc
gcgggagcgCGAGGCGGAAGCTGTGTCGACGGTAGGATACCGTTATCAAG
GACAGAGACAGGGGTACCTGGCCCCCATCCTCGCAGCCCGACCCTTGCGG
GGCGTCTCATTGGGCGAGATCACTTCCGTCAAACTCTCGCCTTCTGGGTC
CCTGGTCATGCTCGGGTACGGGGGCGCGCGGGCGGTGCCCGGGTCgcggg
gggccggggggggtcaCACTATGGTCGAGGTGTACGAGACGGAGCGGATG
GGCAGGGTGCGGTCCGTGAGGTctggcgaggacgaggacgtgaatATCGC
ACGCTTTCACCCCATCCCCGCCCATGGCTTTGTGTACGGCACCAAGCAAG
GAGGGCTCTGCGTCTTCGCGACGCCGAGAGGATCGGGCCCGCCGCACACG
GACGAGGGGTGAATGAAACATCGAGTAAAAGACTGCCACACAAACGTGCT
GCAGTTGCTGGAGAATCGTCGTCGGCATGGAGAGACAGGGGCAACACAGC
GAGCCCTCGAAAGCTGGGCCGAGAGATATAGTCTTGTCCATGCACAAGCG
CACTATATTTCCTTACCCCGATCGACGAAATCCACCATTGCTACTTGTTT
CTCTCCGGATGGCAACATGCTCGCCTCCACTCACGGGGATCACAGCGTCA
AACTCGTCTGCTACCATACCCGCCGCGTCCTTCGCGTCCTTGTCGGACAC
CCACGTACCCCCTGGACTGTTAAGTTTCACCCCCGGAGCCCACGCCTACT
AGCGTCTGGCTGCATCGGGGGCCAGGTCAGGATATGGGACGCGGAGTCGG
GCCACTGCCTACACCGAGCCGCCCTCGACCTTCCcatcatctccctctcc
ttccacccgaGCACGGCCGGCACACAGATCCTCGCGATCGCCACCTTCCA
CAGCATTTGGCTTTGGCCCTATCAAACCTGCGCACGGCCCTACAACGAGT
GGCAAAccgagcgcctcctccggtgcgtctgcttccccccaccccagGGC
CGGCACATCCTGGTCGGCCTTAGCAACGACACCAGGACCGCACCAACAAT
GATGCAGCGACATTCGGAGGACAACGAGagcggaggggagcgggaTCGCG
GAGCAGGCACCACCCCCGCGGGCTCTCCCAAGACCTTCCACCTCTTTTGC
TGGGACTTCGACGCGGAGAAAGCCATGGTGCCGCGTGCCCGCCGAACCCC
CATGGCCCCCATGCGAGGGCGGCCGGgcagaggagatgaggaggtgggag
agggcagcgccccccccgttgTCATGCGGCACTTGTACTCCTCGCCGTTG
GGGCGACCACGCCCCCTTTTGGAGAAGGCCGTCCTGTACAACGACGGGGG
CATGGACGTTTCTGCCTGCGGGCGATTCTTGGTCACTTGTGCCCAATTTC
AGCGCCACGATCTGATTCTGGGATCGGACAGCAGTgaggcgtggggaggg
agggaaagggctcaGGAATGCGGGGGCTCGGACGGCGATGCGTGGCGAGG
CCGCTTCGAGAGGGACGACAggcgcggcgacggcgacgggCTTGCGTTGG
GCCCAGGGGAcgttttctccctcccgcatctGGTgaagctttccctcctt
ccgttcctGCGGGatgagggggatgaggagaaTGGGGACGTCGAAAGGGT
GAGGAGCACGCGCGTGCAcagggggcggcgggagcaggaggcggaggccg
ggggacCGGCCGCCGGAGTAAATGAAGACACCAGTGAGGCTGTCCCCAGT
TGGTACGATGCTCCCATTgcagcggtggaggagacggaccgGAAATggga
cagaaaggaggcgcgggagcgCGAGGCGGAAGCTGTGTCGACGGTAGGAT
ACCGTTATCAAGGACAGAGACAGGGGTACCTGGCCCCCATCCTCGCAGCC
CGACCCTTGCGGGGCGTCTCATTGGGCGAGATCACTTCCGTCAAACTCTC
GCCTTCTGGGTCCCTGGTCATGCTCGGGTACGGGGGCGCGCGGGCGGTGC
CCGGGTCgcggggggccggggggggtcaCACTATGGTCGAGGTGTACGAG
ACGGAGCGGATGGGCAGGGTGCGGTCCGTGAGGTctggcgaggacgagga
cgtgaatATCGCACGCTTTCACCCCATCCCCGCCCATGGCTTTGTGTACG
GCACCAAGCAAGGAGGGCTCTGCGTCTTCGCGACGCCGAGAGGATCGGGC
CCGCCGCACACGGACGAGGGGTGA

Synonyms

Publications