EWM21466.1, cds9209 (CDS) Nannochloropsis gaditana

Overview
NameEWM21466.1
Unique Namecds9209
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:181011..181346 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM21466.1
Productribonucleoprotein LSM
Orig transcript idgnl|cribi|Naga_100019g33.488.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:181011..181346 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom
IPR001163Ribonucl_LSM
IPR006649Ribonucl_LSM_euk/arc
Homology
BLAST of EWM21466.1 vs. NCBI_GenBank
Match: gi|585101696|gb|EWM21466.1| (ribonucleoprotein LSM [Nannochloropsis gaditana])

HSP 1 Score: 215.312 bits (547), Expect = 9.335e-71
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0
Query:    1 MADSPEAKAGGSGVDSLRAKAKLRGLLGSALRVTLSDGRAVTGRYQCMDEHLNVILREASERRGIGARAGVGAGVESVQVRHLGLVMLPGKHVVRVEVKGRDPLEVAGPGT 111
            MADSPEAKAGGSGVDSLRAKAKLRGLLGSALRVTLSDGRAVTGRYQCMDEHLNVILREASERRGIGARAGVGAGVESVQVRHLGLVMLPGKHVVRVEVKGRDPLEVAGPGT
Sbjct:    1 MADSPEAKAGGSGVDSLRAKAKLRGLLGSALRVTLSDGRAVTGRYQCMDEHLNVILREASERRGIGARAGVGAGVESVQVRHLGLVMLPGKHVVRVEVKGRDPLEVAGPGT 111          
BLAST of EWM21466.1 vs. NCBI_GenBank
Match: gi|294954218|ref|XP_002788058.1| (conserved hypothetical protein [Perkinsus marinus ATCC 50983] >gi|239903273|gb|EER19854.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983])

HSP 1 Score: 72.4034 bits (176), Expect = 1.875e-14
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 0
Query:   23 LRGLLGSALRVTLSDGRAVTGRYQCMDEHLNVILREASERRGIGARAGVGAGVESVQVRHLGLVMLPGKHVVRVE 97
            L  LL   LR+TL+DGR +TGR  C+D+  N++LR A ERR       +  G++S   R +G+VM+PGK  V++E
Sbjct:   13 LSSLLHKPLRITLTDGREITGRLYCIDDKKNIVLRNAVERRKGNEVTPLTIGLKSSSTRSIGMVMIPGKDAVKIE 87          
BLAST of EWM21466.1 vs. NCBI_GenBank
Match: gi|682270808|gb|KFX94860.1| (hypothetical protein O988_06110 [Pseudogymnoascus sp. VKM F-3808])

HSP 1 Score: 67.0106 bits (162), Expect = 5.065e-12
Identity = 33/89 (37.08%), Postives = 52/89 (58.43%), Query Frame = 0
Query:   16 SLRAKAKLRGLLGSALRVTLSDGRAVTGRYQCMDEHLNVILREASERR-----GIGARAGVGAGVESVQVRHLGLVMLPGKHVVRVEVK 99
            ++ AK  L GLL  +LRVT +D R   G ++C D   N+IL    E R      +   +G G+    +  R+LGLV++PG+HVV++E++
Sbjct:    5 NVEAKDYLNGLLNKSLRVTTTDKRMFLGEFKCTDSDRNIILAHTYEYRLPSESSLPQTSGTGSVTLEMTSRYLGLVVVPGEHVVKIELE 93          
BLAST of EWM21466.1 vs. NCBI_GenBank
Match: gi|684157876|ref|XP_009152816.1| (hypothetical protein HMPREF1120_00569 [Exophiala dermatitidis NIH/UT8656] >gi|378725896|gb|EHY52355.1| hypothetical protein HMPREF1120_00569 [Exophiala dermatitidis NIH/UT8656])

HSP 1 Score: 66.2402 bits (160), Expect = 8.143e-12
Identity = 34/94 (36.17%), Postives = 54/94 (57.45%), Query Frame = 0
Query:   19 AKAKLRGLLGSALRVTLSDGRAVTGRYQCMDEHLNVILREASERRGIGARAGVGAGVESVQV-----------RHLGLVMLPGKHVVRVEVKGR 101
            A   L  LLG  L VT+SDGR  TGR+QC D   N+IL  A E R + +++   A ++ V+            R +GL+++PGK ++++EV+ +
Sbjct:    6 ATQFLESLLGKTLHVTVSDGRLFTGRFQCTDSDSNIILSNAFEYR-VPSKSTEKAAIDEVKATGRPIKADMTSRFVGLIVIPGKQIMKMEVEEK 98          
BLAST of EWM21466.1 vs. NCBI_GenBank
Match: gi|682346009|gb|KFY39233.1| (hypothetical protein V495_06071 [Pseudogymnoascus sp. VKM F-4514 (FW-929)] >gi|682368983|gb|KFY54662.1| hypothetical protein V497_07526 [Pseudogymnoascus sp. VKM F-4516 (FW-969)])

HSP 1 Score: 66.6254 bits (161), Expect = 8.407e-12
Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = 0
Query:   19 AKAKLRGLLGSALRVTLSDGRAVTGRYQCMDEHLNVILREASERR-----GIGARAGVGAGVESVQVRHLGLVMLPGKHVVRVEVK 99
            AK  L GLL  +LRVT +D R   G ++C D   N+IL    E R      +   +G G+    +  R+LGLV++PG+HVV++E++
Sbjct:    8 AKDYLNGLLNKSLRVTTTDKRMFLGEFKCTDSDRNIILAHTYEYRLPSESSLPQTSGTGSVTLEMTSRYLGLVVVPGEHVVKIELE 93          
BLAST of EWM21466.1 vs. NCBI_GenBank
Match: gi|682262439|gb|KFX89480.1| (hypothetical protein V490_06994 [Pseudogymnoascus sp. VKM F-3557])

HSP 1 Score: 66.2402 bits (160), Expect = 1.162e-11
Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = 0
Query:   19 AKAKLRGLLGSALRVTLSDGRAVTGRYQCMDEHLNVILREASERR-----GIGARAGVGAGVESVQVRHLGLVMLPGKHVVRVEVK 99
            AK  L GLL  +LRVT +D R   G ++C D   N+IL    E R      +   +G G+    +  R+LGLV++PG+HVV++E++
Sbjct:    8 AKDYLNGLLNKSLRVTTTDKRMFLGDFKCTDSDRNIILAHTYEYRLPSESSLPQTSGTGSVTLEMTSRYLGLVVVPGEHVVKIELE 93          
BLAST of EWM21466.1 vs. NCBI_GenBank
Match: gi|1040525087|gb|OBT62178.1| (hypothetical protein VE03_08363 [Pseudogymnoascus sp. 23342-1-I1])

HSP 1 Score: 65.855 bits (159), Expect = 1.788e-11
Identity = 32/92 (34.78%), Postives = 51/92 (55.43%), Query Frame = 0
Query:   13 GVDSLRAKAKLRGLLGSALRVTLSDGRAVTGRYQCMDEHLNVILREASERR-----GIGARAGVGAGVESVQVRHLGLVMLPGKHVVRVEVK 99
               ++ AK  L GLL  +LRVT +D R   G ++C D   N+IL    E R      +   +G G+    +  R+LGLV++PG+HV ++E++
Sbjct:    2 ATSNVEAKDYLNGLLNKSLRVTTTDKRMFLGEFKCTDSDRNIILAHTYEYRLPSESSLPQTSGTGSVTLEMTSRYLGLVVVPGEHVTKIELE 93          
BLAST of EWM21466.1 vs. NCBI_GenBank
Match: gi|629637634|ref|XP_007787463.1| (hypothetical protein EPUS_08862 [Endocarpon pusillum Z07020] >gi|539439670|gb|ERF75192.1| hypothetical protein EPUS_08862 [Endocarpon pusillum Z07020])

HSP 1 Score: 65.0846 bits (157), Expect = 1.881e-11
Identity = 35/103 (33.98%), Postives = 53/103 (51.46%), Query Frame = 0
Query:   14 VDSLRAKAKLRGLLGSALRVTLSDGRAVTGRYQCMDEHLNVILREASERRGIGARA----------GVGAGVESVQVRHLGLVMLPGKHVVRVEVKGRDPLEV 106
            +D+  A   L  L+    R   SDGR   G ++C D   N+IL +  E R   A+A          G G+G   +  R LGLV++PG+H+ ++EV+ R P E+
Sbjct:    1 MDNDSAVKYLESLVNRTFRAHTSDGRMFLGEFKCTDNESNIILAKTYEYRMPTAKAKQDAIERQLAGEGSGKADMTSRFLGLVVVPGQHITKLEVEERKPWEL 103          
BLAST of EWM21466.1 vs. NCBI_GenBank
Match: gi|682358483|gb|KFY47512.1| (hypothetical protein V496_10629 [Pseudogymnoascus sp. VKM F-4515 (FW-2607)] >gi|682431272|gb|KFY97148.1| hypothetical protein V498_02217 [Pseudogymnoascus sp. VKM F-4517 (FW-2822)])

HSP 1 Score: 65.4698 bits (158), Expect = 2.470e-11
Identity = 32/92 (34.78%), Postives = 51/92 (55.43%), Query Frame = 0
Query:   13 GVDSLRAKAKLRGLLGSALRVTLSDGRAVTGRYQCMDEHLNVILREASERR-----GIGARAGVGAGVESVQVRHLGLVMLPGKHVVRVEVK 99
               ++ AK  L GLL  +LRVT +D R   G ++C D   N+IL    E R      +   +G G+    +  R+LGLV++PG+HV ++E++
Sbjct:    2 ATSNVEAKDYLNGLLNKSLRVTTTDKRMFLGEFKCTDSDRNIILAHTYEYRLPSESSLPQTSGAGSVTLEMTSRYLGLVVVPGEHVTKIELE 93          
BLAST of EWM21466.1 vs. NCBI_GenBank
Match: gi|682316577|gb|KFY21364.1| (hypothetical protein V493_07478 [Pseudogymnoascus sp. VKM F-4281 (FW-2241)])

HSP 1 Score: 65.0846 bits (157), Expect = 2.698e-11
Identity = 31/86 (36.05%), Postives = 49/86 (56.98%), Query Frame = 0
Query:   19 AKAKLRGLLGSALRVTLSDGRAVTGRYQCMDEHLNVILREASERR-----GIGARAGVGAGVESVQVRHLGLVMLPGKHVVRVEVK 99
            AK  L GLL  +LRVT +D R   G ++C D   N+IL    E R      +   +G G+    +  R+LGLV++PG+H+ ++E++
Sbjct:    8 AKDYLNGLLNKSLRVTTTDKRMFLGEFKCTDSDRNIILAHTYEYRLPSESSLPQTSGTGSVTLEMTSRYLGLVVVPGEHITKIELE 93          
The following BLAST results are available for this feature:
BLAST of EWM21466.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101696|gb|EWM21466.1|9.335e-71100.00ribonucleoprotein LSM [Nannochloropsis gaditana][more]
gi|294954218|ref|XP_002788058.1|1.875e-1444.00conserved hypothetical protein [Perkinsus marinus ... [more]
gi|682270808|gb|KFX94860.1|5.065e-1237.08hypothetical protein O988_06110 [Pseudogymnoascus ... [more]
gi|684157876|ref|XP_009152816.1|8.143e-1236.17hypothetical protein HMPREF1120_00569 [Exophiala d... [more]
gi|682346009|gb|KFY39233.1|8.407e-1238.37hypothetical protein V495_06071 [Pseudogymnoascus ... [more]
gi|682262439|gb|KFX89480.1|1.162e-1138.37hypothetical protein V490_06994 [Pseudogymnoascus ... [more]
gi|1040525087|gb|OBT62178.1|1.788e-1134.78hypothetical protein VE03_08363 [Pseudogymnoascus ... [more]
gi|629637634|ref|XP_007787463.1|1.881e-1133.98hypothetical protein EPUS_08862 [Endocarpon pusill... [more]
gi|682358483|gb|KFY47512.1|2.470e-1134.78hypothetical protein V496_10629 [Pseudogymnoascus ... [more]
gi|682316577|gb|KFY21364.1|2.698e-1136.05hypothetical protein V493_07478 [Pseudogymnoascus ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9239rna9239Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications