rna9220, rna9220 (mRNA) Nannochloropsis gaditana

Overview
Namerna9220
Unique Namerna9220
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2231
Alignment locationKK037252.1:132701..134367 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100019g50.527.mrna
Orig protein idgnl|cribi|Naga_100019g50.527
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:132701..134367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100019g50gene8944Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21505.1cds9190Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9220rna9220-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9220 ID=rna9220|Name=rna9220|organism=Nannochloropsis gaditana|type=mRNA|length=2231bp
TACTGCATCTGTATAAAAATATGATCATATAATCCACTGGCATCATGCTA
ACATTTTGTGAACTTAATTTGCGCATGCACAGCCGATAAATGTCACGATC
TTTCCTGTGCAAGACAGCAAGGAAAACAATAGTGATCGTGGGTCATGCTT
TACTGAGAATACCTCCGCCGTGGAAGTCTACTCTTGCAATTCTAGCCCTG
TGCATCGTCAATTTACAGAGCACGGTAGCCTTTGTACCACCCCTGGTGGG
GGCAGTTTTCACTCAAAGTGAAGACCTTCTGCCGGCAGCACCGCTGAAAG
ACAGCAACAAGATCGCGAGCGCTTTTTTTGGAAGTCTAGGTTCCTTCACT
AGAATACATTCCAAGTATTTCCCTTGTGGAACCAAGCCAAATATCAGAAT
TGCAGCGCGCAGTAGTGTGCCCTCCAACGAAATGATGGAGGGAAACTTAC
AAGAAAGACGTTATCAAATTATTGCGGCACCTGTATGCGAGCCTATGGCT
CGTCGCCTTCAAATACAGTATCCGGAGCGCTTTCGTTTTCATCCTACCTA
TTGGGGGAAGTTTCCGGATGGCACTGACAACATAGAAGTCGGTGGCTTCC
AACCACACAATGTCATGGCAGGGGAACACGTGTTATTTCTGGCATCGTTC
CACAACAACGACGTTACTCTCTCCCAATTTCAAGTTATGGTTATGCTTCT
ACAAAGCTTTATCGAGAGTCTCACAATTGTGCTTCCATTTTATCCTGTCG
GTACGATGGAACGAGTGAGTAAAGAAGGCCAGGTTGCCACGGCTAATACG
TATGCGCAGATGTTCTCAAATCTGCCATCATGTGGTCGTCCAACTCGACT
TCTCATCTACGACTTACACACGCTCCAAAACCGCTTCTACCTTCACGGTA
ATTCTATCGCTAGTCTACAAACCACCATTCCTATCCTATTCGATGAAATT
CGACAGGAAAAAATTGATTGTGTTGCCTTTCCAGATGACGGAGCTGCAAA
ACGTTTTGCTCACATGTTTGCTCCATTAACCCTTGAACTGGTTACATGTG
GAAAGACTCGAGACGGTGATAAGCGCGCCATCACGGTTCAAGATGGGAAC
CCGAAAAATAAAAGGGTGTTAATTGTGGATGACCTCGTACAAACGGGGGG
GACTCTTTACGAGTGTGGTGTAGCATTGAAAGCCCTAGGTGCTGCTTCTG
TGTCAGCTTTCGTGGCCCACTCTGTTTTCCCAAATGAGTCCTGGAAGCGC
TTTTCGCGTGGTGGGGACCGCAGCGTATTTGAAAAATTTTGGACTACCAA
CTCGATACCAACTGTAACAAACAACCTTCCAAAGGAGGATGTGTTTGTTG
TTTTAGATCTGTTGGAGAAAATTGTTTATGACCTAGATTTTCGGTAAAAA
AATTAAAAAGGTGTTAATAGACCTTTACTAGTCGTTCATTTCATGGAAAA
TCTTCCGAAGTCTGAGAAGGAAACGTACTCGGGCAAAACAAAATGAAAGA
GAATGAAAGTGTAACTATGCACTAATGCAAGAAAGGAATTGTCATATAGG
GTCTTCATAGCGGGCATAAATTGACGGTCCCTTGAAAATGTTTCAGATAG
GGTTATCTTCATATGCATGGTATGAAGTCGAGGATTGCGTTATAATTTCC
TGACAGACATGTGATGCTTTTGTAAGAACGTACGCAACCCGCATTTTGAA
GAGCACGCGACTCCATCTACACATCGACTTGGCCGATAACAGTCGAAATT
CGATTGCTCATATGTGATTAAGATATTTGACCATCCAGGTTGGCTGAAAG
CAATGGATTAGAGCGGAAATATGTACTTTTCCTATCATAATTTAACTGAT
TTTTGTTATATGATGATACTCAAGGGTATCAGAGGCCTTTCTATTATTCC
GAGTTGCATAATCATAGATAAAAGCTTCGCTAGACTAGCTACCACACGAT
GTTGCATCGTGCGGAGCAGAGACACTTTAGAGGTACAATCCATCAATTCT
TGCCGCTTTTCATTGGCGTGGAATACTCCAAATTATACGCAGAGCTCAAA
AGACGTCATCGATATTTTAATTTTACGCTCCACTTTTCTCGACTGCGTAC
AACCATCAAGATTCAGTTACTGATTTTATCACATTTTTCTTTTCTTCCTT
TGATAAGTTGTCATTTCTCCCCTTCTTCGCGAAAAGCAGAGTGAACCGTC
TCTTGTTAATGAACGGTCTTTGCCTCATTCA
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protein sequence of rna9220

>rna9220-protein ID=rna9220-protein|Name=rna9220|organism=Nannochloropsis gaditana|type=polypeptide|length=477bp
MIHAHFCMSFCTDLTEYTMKFCSHVLIMALAIAFLVHKTTEAVGNNGARS
RLVSKLKREVAAKEFSSAKYHNAVLNKIEHKGNKEWSAVGGKEAISPESK
SDLVGEEMRFLEEAEEEVEENDEEEDEDDDWDDDEFEDDDDSEVEEKDAS
PIKNQPALQGEVLIVEGSDKDDLAAALKQVGATNEDIEEILEEEAAFEKL
ENEIEHAMDADSGTPNEAEAEEAGWKTGTDKAAKAMTQKESDANKGKVAA
DVDNLEEGDTMKMDEESRGVDESDEDKEQDEDEHDEDEDGDDDEDEDDED
EDQDQDGEEVENENEIEDEDKEGEHKNGLDNTVEAEGIINDRKEDKKGVS
EFKDGQASMATDKSSTIAGRLVDQSYTQQDSASTSTLAASGETKLDKTHG
AGRNNFWIVSGIGGVVLVAALLISRNRRRFSNGNNMLNTTAFGSNVNHDP
FGMDANSSVTQHYDQYRRVTTHDSRAA
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mRNA from alignment at KK037252.1:132701..134367-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9220 ID=rna9220|Name=rna9220|organism=Nannochloropsis gaditana|type=mRNA|length=1667bp|location=Sequence derived from alignment at KK037252.1:132701..134367- (Nannochloropsis gaditana)
CCAGCCGTTGGCCCATATTATTCTCTCTCGCTCATGATTCATGCACATTT
TTGTATGTCTTTTTGCACAGATTTAACAGAGTATACAATGAAGTTCTGCT
CACATGTGCTCATTATGGCACTGGCCATCGCATTTCTTGTGCATAAGACG
ACCGAAGCTGTTGGTAATAACGGGGCACGTTCGCGGCTAGTCTCCAAGCT
GAAGCGCGAGGTCGCAGCGAAAGAATTTAGCTCGGCCAAGTACCACAACG
CAGTACTCAACAAAATTGAGCATAAGGGAAATAAAGAGTGGTCTGCTGTT
GGAGGCAAAGAAGCGATCTCTCCTGAAAGTAAATCGGACCTTGTAGGAGA
AGAAATGCGTTTCCTAGAGGAAGCGGAGGAAGAGGTTGAGGAAAACGATG
AGGAGGAAGATGAGGACGATGATTGGGACGACGATGAATTTGAAGATGAT
GATGATTCAGAGGTGGAGGAGAAGGATGCCTCACCCATCAAAAATCAGCC
TGCTTTACAGGGCGAAGTTCTCATCGTAGAGGGGTCCGACAAGGATGACT
TGGCGGCAGCGTTAAAACAAGTCGGTGCCACGAATGAGGACATTGAAGAA
ATCCTTGAAGAGGAGGCGGCGTTTGAAAAACTGGAAAACGAAATTGAGCA
TGCGATGGACGCCGACTCAGGAACGCCAAATGAGGCCGAAGCTGAAGAAG
CAGGATGGAAGACAGGAACAGATAAAGCTGCAAAAGCAATGACGCAAAAA
GAAAGTGACGCCAACAAAGGAAAAGTAGCCGCCGACGTCGACAATCTGGA
GGAGGGAGATACGATGAAAATGGATGAGGAAAGTAGGGGAGTGGACGAAA
GTGACGAAGATAAGGAACAGGATGAGGATGAACACGACGAAGACGAGGAC
GGGGATGACGACGAAGACGAAGATGATGAAGACGAGGACCAGGACCAGGA
CGGCGAAGAAGTCGAGAACGAAAATGAGATTGAGGACGAGGATAAAGAGG
GGGAACATAAAAATGGACTAGACAATACCGTGGAAGCAGAAGGGATTATT
AATGATAGAAAAGAGGACAAAAAGGGCGTAAGTGAGTTCAAGGACGGGCA
AGCTTCAATGGCAACGGACAAAAGTAGTACAATTGCTGGTCGCCTCGTGG
ATCAATCTTATACACAACAGGATTCGGCATCGACATCGACGCTAGCAGCT
TCGGGCGAAACGAAGTTAGATAAAACGCATGGTGCAGGTAGAAACAACTT
TTGGATCGTATCAGGAATTGGTGGTGTAGTACTAGTGGCAGCCTTACTGA
TCTCGAGAAATCGACGTCGATTCTCAAATGGTAATAATATGCTTAATACT
ACGGCTTTTGGGAGCAATGTTAACCACGATCCTTTCGGAATGGATGCGAA
TTCCTCAGTCACCCAGCACTATGATCAATATAGGCGAGTAACAACCCATG
ATTCTAGAGCTGCATAAGTACACCGTGAAAATGGATTTCGTATGATCTTA
TATCATTTGCAAAAGTTATTATCAGATTACGGAAAGAGAAGATCTGAAAC
TCGCTTTGGAACACTTTTAAGTTCGGAATTCAAAAAAAATTTGGAGGGTT
TCGGGGGTGGGACCAAAAATTTGCATCATCACGTCGTGCTAAAGAATAGA
TTACGAAATTTTATAGT
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Coding sequence (CDS) from alignment at KK037252.1:132701..134367-

>rna9220 ID=rna9220|Name=rna9220|organism=Nannochloropsis gaditana|type=CDS|length=1434bp|location=Sequence derived from alignment at KK037252.1:132701..134367- (Nannochloropsis gaditana)
ATGATTCATGCACATTTTTGTATGTCTTTTTGCACAGATTTAACAGAGTA
TACAATGAAGTTCTGCTCACATGTGCTCATTATGGCACTGGCCATCGCAT
TTCTTGTGCATAAGACGACCGAAGCTGTTGGTAATAACGGGGCACGTTCG
CGGCTAGTCTCCAAGCTGAAGCGCGAGGTCGCAGCGAAAGAATTTAGCTC
GGCCAAGTACCACAACGCAGTACTCAACAAAATTGAGCATAAGGGAAATA
AAGAGTGGTCTGCTGTTGGAGGCAAAGAAGCGATCTCTCCTGAAAGTAAA
TCGGACCTTGTAGGAGAAGAAATGCGTTTCCTAGAGGAAGCGGAGGAAGA
GGTTGAGGAAAACGATGAGGAGGAAGATGAGGACGATGATTGGGACGACG
ATGAATTTGAAGATGATGATGATTCAGAGGTGGAGGAGAAGGATGCCTCA
CCCATCAAAAATCAGCCTGCTTTACAGGGCGAAGTTCTCATCGTAGAGGG
GTCCGACAAGGATGACTTGGCGGCAGCGTTAAAACAAGTCGGTGCCACGA
ATGAGGACATTGAAGAAATCCTTGAAGAGGAGGCGGCGTTTGAAAAACTG
GAAAACGAAATTGAGCATGCGATGGACGCCGACTCAGGAACGCCAAATGA
GGCCGAAGCTGAAGAAGCAGGATGGAAGACAGGAACAGATAAAGCTGCAA
AAGCAATGACGCAAAAAGAAAGTGACGCCAACAAAGGAAAAGTAGCCGCC
GACGTCGACAATCTGGAGGAGGGAGATACGATGAAAATGGATGAGGAAAG
TAGGGGAGTGGACGAAAGTGACGAAGATAAGGAACAGGATGAGGATGAAC
ACGACGAAGACGAGGACGGGGATGACGACGAAGACGAAGATGATGAAGAC
GAGGACCAGGACCAGGACGGCGAAGAAGTCGAGAACGAAAATGAGATTGA
GGACGAGGATAAAGAGGGGGAACATAAAAATGGACTAGACAATACCGTGG
AAGCAGAAGGGATTATTAATGATAGAAAAGAGGACAAAAAGGGCGTAAGT
GAGTTCAAGGACGGGCAAGCTTCAATGGCAACGGACAAAAGTAGTACAAT
TGCTGGTCGCCTCGTGGATCAATCTTATACACAACAGGATTCGGCATCGA
CATCGACGCTAGCAGCTTCGGGCGAAACGAAGTTAGATAAAACGCATGGT
GCAGGTAGAAACAACTTTTGGATCGTATCAGGAATTGGTGGTGTAGTACT
AGTGGCAGCCTTACTGATCTCGAGAAATCGACGTCGATTCTCAAATGGTA
ATAATATGCTTAATACTACGGCTTTTGGGAGCAATGTTAACCACGATCCT
TTCGGAATGGATGCGAATTCCTCAGTCACCCAGCACTATGATCAATATAG
GCGAGTAACAACCCATGATTCTAGAGCTGCATAA
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Synonyms
Publications