EWM21531.1, cds9143 (CDS) Nannochloropsis gaditana

Overview
NameEWM21531.1
Unique Namecds9143
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037252.1:10543..10956 -

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Properties
Property NameValue
Protein idEWM21531.1
Product3-dehydroquinate synthase
Orig transcript idgnl|cribi|Naga_100650g1.1640.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:10543..10956 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM21531.1 vs. NCBI_GenBank
Match: gi|585101767|gb|EWM21531.1| (3-dehydroquinate synthase [Nannochloropsis gaditana])

HSP 1 Score: 277.33 bits (708), Expect = 1.740e-94
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0
Query:    1 MEMLPDVDLMHGEAVNIDGFFSVLLARRRGLCSLSERDRIFKVMRAIGLPTMVPRGTPSLPPSLPLSPAASTAPTRAEEQAEMVKMLWKGLEDAVEHRHGQQRLPLIVGLGHSVCVSDVTREELEGAVDELYDVHGL 137
            MEMLPDVDLMHGEAVNIDGFFSVLLARRRGLCSLSERDRIFKVMRAIGLPTMVPRGTPSLPPSLPLSPAASTAPTRAEEQAEMVKMLWKGLEDAVEHRHGQQRLPLIVGLGHSVCVSDVTREELEGAVDELYDVHGL
Sbjct:    1 MEMLPDVDLMHGEAVNIDGFFSVLLARRRGLCSLSERDRIFKVMRAIGLPTMVPRGTPSLPPSLPLSPAASTAPTRAEEQAEMVKMLWKGLEDAVEHRHGQQRLPLIVGLGHSVCVSDVTREELEGAVDELYDVHGL 137          
BLAST of EWM21531.1 vs. NCBI_GenBank
Match: gi|545707652|ref|XP_005706140.1| (3-dehydroquinate synthase [Galdieria sulphuraria] >gi|452822602|gb|EME29620.1| 3-dehydroquinate synthase [Galdieria sulphuraria])

HSP 1 Score: 114.39 bits (285), Expect = 1.751e-27
Identity = 61/137 (44.53%), Postives = 81/137 (59.12%), Query Frame = 0
Query:    1 MEMLPDVDLMHGEAVNIDGFFSVLLARRRGLCSLSERDRIFKVMRAIGLPTMVPRGTPSLPPSLPLSPAASTAPTRAEEQAEMVKMLWKGLEDAVEHRHGQQRLPLIVGLGHSVCVSDVTREELEGAVDELYDVHGL 137
            +EM  +  L+HGEAVNIDGFF V+L+ +R L S  ERDRIF  M+ +GLPT+     P                          ++LW+GLEDA+EHRHG+QRLPL+ G+G  + V+DV+  ELE  V EL  +H L
Sbjct:  304 IEMEAEPALLHGEAVNIDGFFCVILSYKRRLISSEERDRIFYAMKKLGLPTIDALCVP--------------------------QVLWRGLEDALEHRHGKQRLPLLNGIGSCIFVNDVSYSELEECVKELNQLHNL 414          
BLAST of EWM21531.1 vs. NCBI_GenBank
Match: gi|298715210|emb|CBJ27882.1| (Similar to 2-Epi-5-Epi-Valiolone Synthase (Sedoheptulose 7-Phosphate Cyclase) [Ectocarpus siliculosus])

HSP 1 Score: 114.39 bits (285), Expect = 2.151e-27
Identity = 60/137 (43.80%), Postives = 89/137 (64.96%), Query Frame = 0
Query:    1 MEMLPDVDLMHGEAVNIDGFFSVLLARRRGLCSLSERDRIFKVMRAIGLPTMVPRGTPSLPPSLPLSPAASTAPTRAEEQAEMVKMLWKGLEDAVEHRHGQQRLPLIV-GLGHSVCVSDVTREELEGAVDELYDVHG 136
            +EM P  D+MHGEAVN+DGF  +++A+RRG+ + +  DR+F+VM++IGLPT        +  S+ L+P                  + KGL DAVEHRHG+QR+PL+  G+G SVCV+D+  +EL+GA+ E + +HG
Sbjct:  317 IEMEPAADIMHGEAVNVDGFLCLVIAKRRGMITEAVLDRVFRVMKSIGLPT--------IHESVQLAP------------------MVKGLADAVEHRHGKQRVPLLKGGIGSSVCVNDINPDELKGAIAEAWALHG 427          
BLAST of EWM21531.1 vs. NCBI_GenBank
Match: gi|1072236923|gb|OEU21651.1| (3-dehydroquinate synthase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 109.383 bits (272), Expect = 8.392e-26
Identity = 55/131 (41.98%), Postives = 77/131 (58.78%), Query Frame = 0
Query:    1 MEMLPDVDLMHGEAVNIDGFFSVLLARRRGLCSLSERDRIFKVMRAIGLPTMVPRGTPSLPPSLPLSPAASTAPTRAEEQAEMVKMLWKGLEDAVEHRHGQQRLPLIVGLGHSVCVSDVTREELEGAVDEL 131
            +EM+P VD+MHGEAVNIDGFF  LL+  RG  ++   +R+F+ M+A+ +PT     T                           K+ W+  +DAVEHRHG QR+PL+  +G SVCVSDVT +EL+ A++ L
Sbjct:  279 LEMVPGVDIMHGEAVNIDGFFCCLLSYLRGFITMDTVNRVFQCMQALQMPTTSSHFTS--------------------------KLAWQSCKDAVEHRHGAQRIPLLTEIGDSVCVSDVTSDELDRALELL 383          
BLAST of EWM21531.1 vs. NCBI_GenBank
Match: gi|1210531622|dbj|GAX09978.1| (3-dehydroquinate synthase [Fistulifera solaris])

HSP 1 Score: 107.842 bits (268), Expect = 8.872e-25
Identity = 54/129 (41.86%), Postives = 77/129 (59.69%), Query Frame = 0
Query:    1 MEMLPDVDLMHGEAVNIDGFFSVLLARRRGLCSLSERDRIFKVMRAIGLPTMVPRGTPSLPPSLPLSPAASTAPTRAEEQAEMVKMLWKGLEDAVEHRHGQQRLPLIVGLGHSVCVSDVTREELEGAVD 129
            +EM+P  D+MHGEAVN+DGFF  +++  RG       DR+FK M++IGLPT                         A+  +E+    W+  +DAVEHRHG+QR+PLI  +G S+CVSD+T EEL+ A++
Sbjct:  421 LEMVPGADIMHGEAVNVDGFFCCVISFLRGYIPRETVDRVFKCMKSIGLPT-----------------------NSADLDSELA---WQSCKDAVEHRHGEQRIPLITDIGESICVSDITPEELDRALE 523          
BLAST of EWM21531.1 vs. NCBI_GenBank
Match: gi|1210526859|dbj|GAX14507.1| (3-dehydroquinate synthase [Fistulifera solaris])

HSP 1 Score: 107.842 bits (268), Expect = 8.968e-25
Identity = 54/129 (41.86%), Postives = 77/129 (59.69%), Query Frame = 0
Query:    1 MEMLPDVDLMHGEAVNIDGFFSVLLARRRGLCSLSERDRIFKVMRAIGLPTMVPRGTPSLPPSLPLSPAASTAPTRAEEQAEMVKMLWKGLEDAVEHRHGQQRLPLIVGLGHSVCVSDVTREELEGAVD 129
            +EM+P  D+MHGEAVN+DGFF  +++  RG       DR+FK M++IGLPT                         A+  +E+    W+  +DAVEHRHG+QR+PLI  +G S+CVSD+T EEL+ A++
Sbjct:  398 LEMVPGADIMHGEAVNVDGFFCCVISFLRGYIPRETVDRVFKCMKSIGLPT-----------------------NSADLDSELA---WQSCKDAVEHRHGEQRIPLITDIGESICVSDITPEELDRALE 500          
BLAST of EWM21531.1 vs. NCBI_GenBank
Match: gi|397563125|gb|EJK43661.1| (hypothetical protein THAOC_37874 [Thalassiosira oceanica])

HSP 1 Score: 107.457 bits (267), Expect = 1.717e-24
Identity = 50/129 (38.76%), Postives = 74/129 (57.36%), Query Frame = 0
Query:    1 MEMLPDVDLMHGEAVNIDGFFSVLLARRRGLCSLSERDRIFKVMRAIGLPTMVPRGTPSLPPSLPLSPAASTAPTRAEEQAEMVKMLWKGLEDAVEHRHGQQRLPLIVGLGHSVCVSDVTREELEGAVD 129
            +EM+P  D+ HGEAVN+DGFF V+L+  RG   +   DRIFK M+ + LPT                                +++ W+  +DA+EHRHG+ R+PLI  +G S+CV+D+T+EEL+ A+D
Sbjct:  444 LEMVPGADIFHGEAVNVDGFFCVILSYLRGYVDMDTVDRIFKCMKTMNLPT--------------------------NSDDLKLELAWQSCQDAIEHRHGEMRIPLITDIGDSICVNDLTKEELDRAID 546          
BLAST of EWM21531.1 vs. NCBI_GenBank
Match: gi|219110901|ref|XP_002177202.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411737|gb|EEC51665.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 102.449 bits (254), Expect = 1.131e-23
Identity = 53/129 (41.09%), Postives = 73/129 (56.59%), Query Frame = 0
Query:    1 MEMLPDVDLMHGEAVNIDGFFSVLLARRRGLCSLSERDRIFKVMRAIGLPTMVPRGTPSLPPSLPLSPAASTAPTRAEEQAEMVKMLWKGLEDAVEHRHGQQRLPLIVGLGHSVCVSDVTREELEGAVD 129
            +EM+P  D+MHGEAVN+DGFF  +L+  RG        R+   M+++ LPT                 +A   PT A          W+  +DAVEHRHG+QR+PLI  +G S+CVSD+T+EEL  A+D
Sbjct:  200 LEMVPGADIMHGEAVNVDGFFCCILSYLRGYIPRETVQRVLNCMQSLALPTH----------------SADLNPTLA----------WQSCKDAVEHRHGEQRIPLITEIGESICVSDITQEELSRALD 302          
BLAST of EWM21531.1 vs. NCBI_GenBank
Match: gi|223995773|ref|XP_002287560.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976676|gb|EED95003.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 103.99 bits (258), Expect = 2.276e-23
Identity = 49/128 (38.28%), Postives = 72/128 (56.25%), Query Frame = 0
Query:    1 MEMLPDVDLMHGEAVNIDGFFSVLLARRRGLCSLSERDRIFKVMRAIGLPTMVPRGTPSLPPSLPLSPAASTAPTRAEEQAEMVKMLWKGLEDAVEHRHGQQRLPLIVGLGHSVCVSDVTREELEGAV 128
            +EM+P  D+MHGEAVN+DGFF  +++  RG   +   +RIF  M+++ LPT                                + + W+  +DA+EHRHG+QR+PLI  +G S+CVSD+T EELE A+
Sbjct:  427 LEMVPGADIMHGEAVNVDGFFCAVISYLRGYIDMDTVNRIFACMKSLSLPT--------------------------NSSDLKLDLAWQSCKDAIEHRHGEQRIPLITEIGESICVSDITEEELERAL 528          
BLAST of EWM21531.1 vs. NCBI_GenBank
Match: gi|546308006|ref|XP_005713525.1| (probable 2-epi-valiolone synthase [Chondrus crispus] >gi|507109919|emb|CDF33706.1| probable 2-epi-valiolone synthase [Chondrus crispus])

HSP 1 Score: 88.5817 bits (218), Expect = 4.660e-18
Identity = 46/136 (33.82%), Postives = 74/136 (54.41%), Query Frame = 0
Query:    1 MEMLPDVDLMHGEAVNIDGFFSVLLARRRGLCSLSERDRIFKVMRAIGLPTMVPRGTPSLPPSLPLSPAASTAPTRAEEQAEMVKMLWKGLEDAVEHRHGQQRLPLIVG-LGHSVCVSDVTREELEGAVDELYDVH 135
            +EM     +MHGEAVNIDGF  ++L+ R+G  S   R+R+F  MR IGLPT                             A  +K+L + + D +EHRHG+ R+PL+ G +G S  +++ T ++L+ A+ ++ ++H
Sbjct:  306 LEMTASPPVMHGEAVNIDGFICIILSHRKGWISTETRNRVFAAMRNIGLPTW--------------------------NSACTIKLLSQAVTDGIEHRHGKLRMPLVRGNIGQSGFINECTEDQLQDAISQILEMH 415          
The following BLAST results are available for this feature:
BLAST of EWM21531.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101767|gb|EWM21531.1|1.740e-94100.003-dehydroquinate synthase [Nannochloropsis gaditan... [more]
gi|545707652|ref|XP_005706140.1|1.751e-2744.533-dehydroquinate synthase [Galdieria sulphuraria] ... [more]
gi|298715210|emb|CBJ27882.1|2.151e-2743.80Similar to 2-Epi-5-Epi-Valiolone Synthase (Sedohep... [more]
gi|1072236923|gb|OEU21651.1|8.392e-2641.983-dehydroquinate synthase [Fragilariopsis cylindru... [more]
gi|1210531622|dbj|GAX09978.1|8.872e-2541.863-dehydroquinate synthase [Fistulifera solaris][more]
gi|1210526859|dbj|GAX14507.1|8.968e-2541.863-dehydroquinate synthase [Fistulifera solaris][more]
gi|397563125|gb|EJK43661.1|1.717e-2438.76hypothetical protein THAOC_37874 [Thalassiosira oc... [more]
gi|219110901|ref|XP_002177202.1|1.131e-2341.09predicted protein, partial [Phaeodactylum tricornu... [more]
gi|223995773|ref|XP_002287560.1|2.276e-2338.28predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|546308006|ref|XP_005713525.1|4.660e-1833.82probable 2-epi-valiolone synthase [Chondrus crispu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9173rna9173Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications