EWM21531.1, cds9143 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM21531.1 vs. NCBI_GenBank
Match: gi|585101767|gb|EWM21531.1| (3-dehydroquinate synthase [Nannochloropsis gaditana]) HSP 1 Score: 277.33 bits (708), Expect = 1.740e-94 Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 Query: 1 MEMLPDVDLMHGEAVNIDGFFSVLLARRRGLCSLSERDRIFKVMRAIGLPTMVPRGTPSLPPSLPLSPAASTAPTRAEEQAEMVKMLWKGLEDAVEHRHGQQRLPLIVGLGHSVCVSDVTREELEGAVDELYDVHGL 137 MEMLPDVDLMHGEAVNIDGFFSVLLARRRGLCSLSERDRIFKVMRAIGLPTMVPRGTPSLPPSLPLSPAASTAPTRAEEQAEMVKMLWKGLEDAVEHRHGQQRLPLIVGLGHSVCVSDVTREELEGAVDELYDVHGL Sbjct: 1 MEMLPDVDLMHGEAVNIDGFFSVLLARRRGLCSLSERDRIFKVMRAIGLPTMVPRGTPSLPPSLPLSPAASTAPTRAEEQAEMVKMLWKGLEDAVEHRHGQQRLPLIVGLGHSVCVSDVTREELEGAVDELYDVHGL 137
BLAST of EWM21531.1 vs. NCBI_GenBank
Match: gi|545707652|ref|XP_005706140.1| (3-dehydroquinate synthase [Galdieria sulphuraria] >gi|452822602|gb|EME29620.1| 3-dehydroquinate synthase [Galdieria sulphuraria]) HSP 1 Score: 114.39 bits (285), Expect = 1.751e-27 Identity = 61/137 (44.53%), Postives = 81/137 (59.12%), Query Frame = 0 Query: 1 MEMLPDVDLMHGEAVNIDGFFSVLLARRRGLCSLSERDRIFKVMRAIGLPTMVPRGTPSLPPSLPLSPAASTAPTRAEEQAEMVKMLWKGLEDAVEHRHGQQRLPLIVGLGHSVCVSDVTREELEGAVDELYDVHGL 137 +EM + L+HGEAVNIDGFF V+L+ +R L S ERDRIF M+ +GLPT+ P ++LW+GLEDA+EHRHG+QRLPL+ G+G + V+DV+ ELE V EL +H L Sbjct: 304 IEMEAEPALLHGEAVNIDGFFCVILSYKRRLISSEERDRIFYAMKKLGLPTIDALCVP--------------------------QVLWRGLEDALEHRHGKQRLPLLNGIGSCIFVNDVSYSELEECVKELNQLHNL 414
BLAST of EWM21531.1 vs. NCBI_GenBank
Match: gi|298715210|emb|CBJ27882.1| (Similar to 2-Epi-5-Epi-Valiolone Synthase (Sedoheptulose 7-Phosphate Cyclase) [Ectocarpus siliculosus]) HSP 1 Score: 114.39 bits (285), Expect = 2.151e-27 Identity = 60/137 (43.80%), Postives = 89/137 (64.96%), Query Frame = 0 Query: 1 MEMLPDVDLMHGEAVNIDGFFSVLLARRRGLCSLSERDRIFKVMRAIGLPTMVPRGTPSLPPSLPLSPAASTAPTRAEEQAEMVKMLWKGLEDAVEHRHGQQRLPLIV-GLGHSVCVSDVTREELEGAVDELYDVHG 136 +EM P D+MHGEAVN+DGF +++A+RRG+ + + DR+F+VM++IGLPT + S+ L+P + KGL DAVEHRHG+QR+PL+ G+G SVCV+D+ +EL+GA+ E + +HG Sbjct: 317 IEMEPAADIMHGEAVNVDGFLCLVIAKRRGMITEAVLDRVFRVMKSIGLPT--------IHESVQLAP------------------MVKGLADAVEHRHGKQRVPLLKGGIGSSVCVNDINPDELKGAIAEAWALHG 427
BLAST of EWM21531.1 vs. NCBI_GenBank
Match: gi|1072236923|gb|OEU21651.1| (3-dehydroquinate synthase [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 109.383 bits (272), Expect = 8.392e-26 Identity = 55/131 (41.98%), Postives = 77/131 (58.78%), Query Frame = 0 Query: 1 MEMLPDVDLMHGEAVNIDGFFSVLLARRRGLCSLSERDRIFKVMRAIGLPTMVPRGTPSLPPSLPLSPAASTAPTRAEEQAEMVKMLWKGLEDAVEHRHGQQRLPLIVGLGHSVCVSDVTREELEGAVDEL 131 +EM+P VD+MHGEAVNIDGFF LL+ RG ++ +R+F+ M+A+ +PT T K+ W+ +DAVEHRHG QR+PL+ +G SVCVSDVT +EL+ A++ L Sbjct: 279 LEMVPGVDIMHGEAVNIDGFFCCLLSYLRGFITMDTVNRVFQCMQALQMPTTSSHFTS--------------------------KLAWQSCKDAVEHRHGAQRIPLLTEIGDSVCVSDVTSDELDRALELL 383
BLAST of EWM21531.1 vs. NCBI_GenBank
Match: gi|1210531622|dbj|GAX09978.1| (3-dehydroquinate synthase [Fistulifera solaris]) HSP 1 Score: 107.842 bits (268), Expect = 8.872e-25 Identity = 54/129 (41.86%), Postives = 77/129 (59.69%), Query Frame = 0 Query: 1 MEMLPDVDLMHGEAVNIDGFFSVLLARRRGLCSLSERDRIFKVMRAIGLPTMVPRGTPSLPPSLPLSPAASTAPTRAEEQAEMVKMLWKGLEDAVEHRHGQQRLPLIVGLGHSVCVSDVTREELEGAVD 129 +EM+P D+MHGEAVN+DGFF +++ RG DR+FK M++IGLPT A+ +E+ W+ +DAVEHRHG+QR+PLI +G S+CVSD+T EEL+ A++ Sbjct: 421 LEMVPGADIMHGEAVNVDGFFCCVISFLRGYIPRETVDRVFKCMKSIGLPT-----------------------NSADLDSELA---WQSCKDAVEHRHGEQRIPLITDIGESICVSDITPEELDRALE 523
BLAST of EWM21531.1 vs. NCBI_GenBank
Match: gi|1210526859|dbj|GAX14507.1| (3-dehydroquinate synthase [Fistulifera solaris]) HSP 1 Score: 107.842 bits (268), Expect = 8.968e-25 Identity = 54/129 (41.86%), Postives = 77/129 (59.69%), Query Frame = 0 Query: 1 MEMLPDVDLMHGEAVNIDGFFSVLLARRRGLCSLSERDRIFKVMRAIGLPTMVPRGTPSLPPSLPLSPAASTAPTRAEEQAEMVKMLWKGLEDAVEHRHGQQRLPLIVGLGHSVCVSDVTREELEGAVD 129 +EM+P D+MHGEAVN+DGFF +++ RG DR+FK M++IGLPT A+ +E+ W+ +DAVEHRHG+QR+PLI +G S+CVSD+T EEL+ A++ Sbjct: 398 LEMVPGADIMHGEAVNVDGFFCCVISFLRGYIPRETVDRVFKCMKSIGLPT-----------------------NSADLDSELA---WQSCKDAVEHRHGEQRIPLITDIGESICVSDITPEELDRALE 500
BLAST of EWM21531.1 vs. NCBI_GenBank
Match: gi|397563125|gb|EJK43661.1| (hypothetical protein THAOC_37874 [Thalassiosira oceanica]) HSP 1 Score: 107.457 bits (267), Expect = 1.717e-24 Identity = 50/129 (38.76%), Postives = 74/129 (57.36%), Query Frame = 0 Query: 1 MEMLPDVDLMHGEAVNIDGFFSVLLARRRGLCSLSERDRIFKVMRAIGLPTMVPRGTPSLPPSLPLSPAASTAPTRAEEQAEMVKMLWKGLEDAVEHRHGQQRLPLIVGLGHSVCVSDVTREELEGAVD 129 +EM+P D+ HGEAVN+DGFF V+L+ RG + DRIFK M+ + LPT +++ W+ +DA+EHRHG+ R+PLI +G S+CV+D+T+EEL+ A+D Sbjct: 444 LEMVPGADIFHGEAVNVDGFFCVILSYLRGYVDMDTVDRIFKCMKTMNLPT--------------------------NSDDLKLELAWQSCQDAIEHRHGEMRIPLITDIGDSICVNDLTKEELDRAID 546
BLAST of EWM21531.1 vs. NCBI_GenBank
Match: gi|219110901|ref|XP_002177202.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411737|gb|EEC51665.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 102.449 bits (254), Expect = 1.131e-23 Identity = 53/129 (41.09%), Postives = 73/129 (56.59%), Query Frame = 0 Query: 1 MEMLPDVDLMHGEAVNIDGFFSVLLARRRGLCSLSERDRIFKVMRAIGLPTMVPRGTPSLPPSLPLSPAASTAPTRAEEQAEMVKMLWKGLEDAVEHRHGQQRLPLIVGLGHSVCVSDVTREELEGAVD 129 +EM+P D+MHGEAVN+DGFF +L+ RG R+ M+++ LPT +A PT A W+ +DAVEHRHG+QR+PLI +G S+CVSD+T+EEL A+D Sbjct: 200 LEMVPGADIMHGEAVNVDGFFCCILSYLRGYIPRETVQRVLNCMQSLALPTH----------------SADLNPTLA----------WQSCKDAVEHRHGEQRIPLITEIGESICVSDITQEELSRALD 302
BLAST of EWM21531.1 vs. NCBI_GenBank
Match: gi|223995773|ref|XP_002287560.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976676|gb|EED95003.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 103.99 bits (258), Expect = 2.276e-23 Identity = 49/128 (38.28%), Postives = 72/128 (56.25%), Query Frame = 0 Query: 1 MEMLPDVDLMHGEAVNIDGFFSVLLARRRGLCSLSERDRIFKVMRAIGLPTMVPRGTPSLPPSLPLSPAASTAPTRAEEQAEMVKMLWKGLEDAVEHRHGQQRLPLIVGLGHSVCVSDVTREELEGAV 128 +EM+P D+MHGEAVN+DGFF +++ RG + +RIF M+++ LPT + + W+ +DA+EHRHG+QR+PLI +G S+CVSD+T EELE A+ Sbjct: 427 LEMVPGADIMHGEAVNVDGFFCAVISYLRGYIDMDTVNRIFACMKSLSLPT--------------------------NSSDLKLDLAWQSCKDAIEHRHGEQRIPLITEIGESICVSDITEEELERAL 528
BLAST of EWM21531.1 vs. NCBI_GenBank
Match: gi|546308006|ref|XP_005713525.1| (probable 2-epi-valiolone synthase [Chondrus crispus] >gi|507109919|emb|CDF33706.1| probable 2-epi-valiolone synthase [Chondrus crispus]) HSP 1 Score: 88.5817 bits (218), Expect = 4.660e-18 Identity = 46/136 (33.82%), Postives = 74/136 (54.41%), Query Frame = 0 Query: 1 MEMLPDVDLMHGEAVNIDGFFSVLLARRRGLCSLSERDRIFKVMRAIGLPTMVPRGTPSLPPSLPLSPAASTAPTRAEEQAEMVKMLWKGLEDAVEHRHGQQRLPLIVG-LGHSVCVSDVTREELEGAVDELYDVH 135 +EM +MHGEAVNIDGF ++L+ R+G S R+R+F MR IGLPT A +K+L + + D +EHRHG+ R+PL+ G +G S +++ T ++L+ A+ ++ ++H Sbjct: 306 LEMTASPPVMHGEAVNIDGFICIILSHRKGWISTETRNRVFAAMRNIGLPTW--------------------------NSACTIKLLSQAVTDGIEHRHGKLRMPLVRGNIGQSGFINECTEDQLQDAISQILEMH 415 The following BLAST results are available for this feature:
BLAST of EWM21531.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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