rna9173, rna9173 (mRNA) Nannochloropsis gaditana

Overview
Namerna9173
Unique Namerna9173
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1773
Alignment locationKK037252.1:10543..11002 -

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Properties
Property NameValue
Product3-dehydroquinate synthase
Orig transcript idgnl|cribi|Naga_100650g1.1640.mrna
Orig protein idgnl|cribi|Naga_100650g1.1640
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037252.1supercontigKK037252.1:10543..11002 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100650g1gene8898Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21531.1cds9143Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9173rna9173-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9173 ID=rna9173|Name=rna9173|organism=Nannochloropsis gaditana|type=mRNA|length=1773bp
GTACAGACACACAAGAGGTCCATGGCGGACAGTGGCGCCTCCATGAGTCC
GGTGTCCTCCTCTCCGCCCATGTCTGACCCAGGACAGTCCCCTTCGCCAG
TCCTTTGCCCCGCAGCATCTCCATCCCAAACATGTCCGACACCCACATCC
ATGAAACATTGTCAAGATTCTCCGTCACACTCATCAGCCTCCGAATCATC
GTCGTCGCAACCAGGCTCCTCGCCAGCACAGCCTGACGCTTCACCTCGTC
GAGAACAAGACCCACTACACCCGCAACAAGAACAACGACAGCATGTTCAA
GCTCTGGAAGCGCAGCTCTTGAAATTCAAACGACTCTTGACCATGTCCCG
GGAACGCCTGGAAGAAAATCAACGGCACTTGGCGGAAAAAACGCAAACCA
TCGACCGGCTTTCCAAAGAGGTGGAAAGCACGCGACAGCAATGGAGACAG
ACAGAGGCTATTGCGGCCTCCAAGGCACAGGCGGCCCTAGAGGCGACGAC
AGCACTGAAAGAATTGCAGCAACAGCTGAACCAACAGCAGCAGGAAATGA
AGGACGTGGAAAAGGAAGCCAAGCATGGGAAGGGAGGCTCCATTCGACGG
AAACTCGCCCCGGACAAGCAAGGCAAGCAGAGTCCAAAGCCGACGCTCCC
AGCATATCCGCGCCGCAGCTTGCTCTATGTGGAGCACGGGGGAACGCATT
GGGTCCTTTTTGACTACCACGACCCCGTCTCCCACAAATCCGGGGCCCAG
AACCAGGAGAATGGCTGCCCCTCCCCCTCCCCCTCGCAGGCGGTGTGGAG
GGCCTTCCCCGCCAGGAGCGACCTGGACGCTTTCCTCCTGCAGGTTCCTG
GCTCCGAGCCTCTTCTCCTCCCGGCCCCCTGCCTTCCGGCCGCGCAAGCC
TCTCTCCTCCAGGCCCAGGCGCAAGCTCAGGTCGAGAAAGCCCTGGAAGA
ACTACGGTGCGGCGAGGACGACCGACCTCCCTTCCTCCCTCCCTCCCTCC
CTCCCCGTCCTGACCCACCTTCTTTCCCACCCCATTCCAGAAAATACCGA
GTGCGGACGGAGCTTGCCGTCCGCCAGAAAGACATGGAAATACAGCAGTT
GTCTGCTCAGCTATTGGCGTCACAACAGGACCGGATTCAGCATCAGGGCC
CAACCGAGGAGGAGCTGAGACGGACCCTCAAAGCCCAGGCCGACACCCTT
CAGGCCCTCCGTGCCGAGTTGAGGGATCAGGAAGAAAAGTGGAAGGGGCA
GTACGAGCGTCTGCGGAAAGAGAAGGCAGGGCTGGAGGCCGCCGGGGCTG
AGACGGGCCTCGCCCTTCAGTGGCGGCGGCGGTACGAAGAGCTCTTGCAG
GAGAGGGAGAGGGAGGGAAAAAGGGAGGGAGGGGGGCACCGCATGAGTTT
CTCGGGATCGGGGCCCGTGGAGGAGAAGTACACGGAGTTGAAGGAGGAGT
ACCGCCTGTACAGAAAGAAAGCTCTAGAGACTTTGCGGGAGAAGGACAAT
TTGATCGCCACGCTGGATGGGGAGGGGGAGAGGAGGGGGGAGAGGAGGGG
GGAGAGGGCAGATGGGCTGGAGGGAGGGACGTTGGTGTACTTGAAGAACT
TGACCGAAAAGTATTTTAGCAGCGGTTGCGAGGAGATCAAGGAGCACACC
GAAAGGGCGATATGCACGGTATTGGGGTTCGATGAGGAGGAGGTGAAGAG
GATGAAAGAGGCGAGAGGAGGGGGAGGAGGAGGGGCGTGGGGGAACAGCT
TGTTCGGGGGGGGAGGGCGTTGA
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protein sequence of rna9173

>rna9173-protein ID=rna9173-protein|Name=rna9173|organism=Nannochloropsis gaditana|type=polypeptide|length=137bp
MEMLPDVDLMHGEAVNIDGFFSVLLARRRGLCSLSERDRIFKVMRAIGLP
TMVPRGTPSLPPSLPLSPAASTAPTRAEEQAEMVKMLWKGLEDAVEHRHG
QQRLPLIVGLGHSVCVSDVTREELEGAVDELYDVHGL
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mRNA from alignment at KK037252.1:10543..11002-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9173 ID=rna9173|Name=rna9173|organism=Nannochloropsis gaditana|type=mRNA|length=460bp|location=Sequence derived from alignment at KK037252.1:10543..11002- (Nannochloropsis gaditana)
CCTCCTTCCCAGATGCGTGGATTTCGGCCACACCTTCAGCAAGATCATGG
AGATGCTCCCAGACGTGGACTTGATGCACGGCGAAGCTGTCAATATCGAC
GGCTTCTTCTCCGTCCTCTTGGCCCGCCGGCGCGGCCTGTGCTCCCTCTC
GGAGCGAGACAGGATCTTCAAGGTCATGCGCGCCATCGGCCTCCCGACCA
TGGTGCCCCGGGGCACGCCCTCCCTCCCGCCCTCCCTCCCGCTCTCCCCC
GCTGCCTCCACCGCCCCCACGCGCGCGGAGGAGCAAGCGGAGATGGTGAA
GATGCTTTGGAAGGGTTTGGAGGACGCGGTGGAGCACCGGCACGGGCAGC
AACGTTTGCCCCTGATTGTGGGGTTGGGACACAGTGTTTGTGTCTCGGAC
GTCACGCGGGAGGAGCTGGAGGGGGCGGTGGACGAGCTGTACGACGTGCA
CGGTCTTTGA
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Coding sequence (CDS) from alignment at KK037252.1:10543..11002-

>rna9173 ID=rna9173|Name=rna9173|organism=Nannochloropsis gaditana|type=CDS|length=414bp|location=Sequence derived from alignment at KK037252.1:10543..11002- (Nannochloropsis gaditana)
ATGGAGATGCTCCCAGACGTGGACTTGATGCACGGCGAAGCTGTCAATAT
CGACGGCTTCTTCTCCGTCCTCTTGGCCCGCCGGCGCGGCCTGTGCTCCC
TCTCGGAGCGAGACAGGATCTTCAAGGTCATGCGCGCCATCGGCCTCCCG
ACCATGGTGCCCCGGGGCACGCCCTCCCTCCCGCCCTCCCTCCCGCTCTC
CCCCGCTGCCTCCACCGCCCCCACGCGCGCGGAGGAGCAAGCGGAGATGG
TGAAGATGCTTTGGAAGGGTTTGGAGGACGCGGTGGAGCACCGGCACGGG
CAGCAACGTTTGCCCCTGATTGTGGGGTTGGGACACAGTGTTTGTGTCTC
GGACGTCACGCGGGAGGAGCTGGAGGGGGCGGTGGACGAGCTGTACGACG
TGCACGGTCTTTGA
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Synonyms
Publications