EWM21539.1, cds9134 (CDS) Nannochloropsis gaditana

Overview
NameEWM21539.1
Unique Namecds9134
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:473165..473455 +
Alignment locationKK037251.1:473636..473794 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21539.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101231g1.5614.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:473165..473455 +
KK037251.1supercontigKK037251.1:473636..473794 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM21539.1 vs. NCBI_GenBank
Match: gi|585101781|gb|EWM21539.1| (hypothetical protein Naga_101231g1 [Nannochloropsis gaditana])

HSP 1 Score: 301.982 bits (772), Expect = 8.376e-104
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 
Query:    1 MTEPTKMGRIRGHVSFLLPLLLLLPVARAFLGRGLTPARASIPLGGGCNARQASAVSPAYAMSANVMERPRSPETDSKENKKVFERLFVELSKSPSEIPPQALDEALALAARGRSWSRAMKLLRLPTARPTSEQYHMAIVACKRAQHKW 149
            MTEPTKMGRIRGHVSFLLPLLLLLPVARAFLGRGLTPARASIPLGGGCNARQASAVSPAYAMSANVMERPRSPETDSKENKKVFERLFVELSKSPSEIPPQALDEALALAARGRSWSRAMKLLRLPTARPTSEQYHMAIVACKRAQHKW
Sbjct:    1 MTEPTKMGRIRGHVSFLLPLLLLLPVARAFLGRGLTPARASIPLGGGCNARQASAVSPAYAMSANVMERPRSPETDSKENKKVFERLFVELSKSPSEIPPQALDEALALAARGRSWSRAMKLLRLPTARPTSEQYHMAIVACKRAQHKW 149
[Close]
BLAST of EWM21539.1 vs. NCBI_GenBank
Match: gi|553182281|ref|XP_005853707.1| (hypothetical protein NGA_0493600 [Nannochloropsis gaditana CCMP526] >gi|422295353|gb|EKU22652.1| hypothetical protein NGA_0493600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 278.87 bits (712), Expect = 4.161e-92
Identity = 139/143 (97.20%), Postives = 139/143 (97.20%), Query Frame = 0 
Query:    7 MGRIRGHVSFLLPLLLLLPVARAFLGRGLTPARASIPLGGGCNARQASAVSPAYAMSANVMERPRSPETDSKENKKVFERLFVELSKSPSEIPPQALDEALALAARGRSWSRAMKLLRLPTARPTSEQYHMAIVACKRAQHKW 149
            MGRIRGHVSFLLPLLLLLPVARAFLGRGLTPARASIPLGGGCNARQASAVSPAYAMSANVMERPRSPETDSKENKKVFERLFVELSKSPSE    ALDEALALAARGRSWSRAMKLLRLPTARPTSEQYHMAIVACKRAQHKW
Sbjct:    1 MGRIRGHVSFLLPLLLLLPVARAFLGRGLTPARASIPLGGGCNARQASAVSPAYAMSANVMERPRSPETDSKENKKVFERLFVELSKSPSE----ALDEALALAARGRSWSRAMKLLRLPTARPTSEQYHMAIVACKRAQHKW 139
The following BLAST results are available for this feature:
BLAST of EWM21539.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585101781|gb|EWM21539.1|8.376e-104100.00hypothetical protein Naga_101231g1 [Nannochloropsi... [more]
gi|553182281|ref|XP_005853707.1|4.161e-9297.20hypothetical protein NGA_0493600 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9164rna9164Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications