EWM21552.1, cds9122 (CDS) Nannochloropsis gaditana

Overview
NameEWM21552.1
Unique Namecds9122
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:450803..450808 +
Alignment locationKK037251.1:450957..451063 +
Alignment locationKK037251.1:451276..451490 +
Alignment locationKK037251.1:451663..451925 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21552.1
Productrab family gtpase
Orig transcript idgnl|cribi|Naga_100564g5.6262.mrna
GeneRab2B
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:450803..450808 +
KK037251.1supercontigKK037251.1:450957..451063 +
KK037251.1supercontigKK037251.1:451276..451490 +
KK037251.1supercontigKK037251.1:451663..451925 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0005525GTP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005768endosome
GO:0005794Golgi apparatus
GO:0005622intracellular
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0009605response to external stimulus
GO:0009607response to biotic stimulus
GO:0006950response to stress
GO:0006810transport
GO:0015031protein transport
GO:0007165signal transduction
GO:0007264small GTPase mediated signal transduction
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR005225Small_GTP-bd_dom
IPR003578Small_GTPase_Rho
IPR003579Small_GTPase_Rab_type
IPR020849Small_GTPase_Ras
IPR001806Small_GTPase
Homology
BLAST of EWM21552.1 vs. NCBI_GenBank
Match: gi|585101801|gb|EWM21552.1| (rab family gtpase [Nannochloropsis gaditana])

HSP 1 Score: 407.527 bits (1046), Expect = 4.824e-144
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0
Query:    1 MTVGVEYGLKSATVRDQNIQIEIWDTAGQEAYMSLTNSYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAALRQVAREEAEAVAAHQGMEYREVTAKDHTAVQGLFQTTAERIFQAFETGAGLKGGMGGSDIVIDGAGKIRLRSFNSSLSSSAFGLSPGRSARSQEMAGNSGKGRCC 196
            MTVGVEYGLKSATVRDQNIQIEIWDTAGQEAYMSLTNSYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAALRQVAREEAEAVAAHQGMEYREVTAKDHTAVQGLFQTTAERIFQAFETGAGLKGGMGGSDIVIDGAGKIRLRSFNSSLSSSAFGLSPGRSARSQEMAGNSGKGRCC
Sbjct:    1 MTVGVEYGLKSATVRDQNIQIEIWDTAGQEAYMSLTNSYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAALRQVAREEAEAVAAHQGMEYREVTAKDHTAVQGLFQTTAERIFQAFETGAGLKGGMGGSDIVIDGAGKIRLRSFNSSLSSSAFGLSPGRSARSQEMAGNSGKGRCC 196          
BLAST of EWM21552.1 vs. NCBI_GenBank
Match: gi|299471595|emb|CBN76817.1| (Rab2B, RAB family GTPase [Ectocarpus siliculosus])

HSP 1 Score: 144.821 bits (364), Expect = 2.718e-40
Identity = 66/137 (48.18%), Postives = 92/137 (67.15%), Query Frame = 0
Query:    1 MTVGVEYGLKSATVRDQNIQIEIWDTAGQEAYMSLTNSYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAALRQVAREEAEAVAAHQGMEYREVTAKDHTAVQGLFQTTAERIFQAFE 137
            MT+GVE+G K  ++ D  +++EIWDTAGQE+++S+T SYYR  DGCL+VFD+T R+SFE + +W + AR  S NP L   L+ NKAD A  R V  EE +A A   G+ + E++A++   V+  F  TAERIF   E
Sbjct:   36 MTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLE 172          
BLAST of EWM21552.1 vs. NCBI_GenBank
Match: gi|676382623|ref|XP_009034590.1| (hypothetical protein AURANDRAFT_22559 [Aureococcus anophagefferens] >gi|323455162|gb|EGB11031.1| hypothetical protein AURANDRAFT_22559 [Aureococcus anophagefferens])

HSP 1 Score: 140.584 bits (353), Expect = 1.466e-38
Identity = 64/134 (47.76%), Postives = 94/134 (70.15%), Query Frame = 0
Query:    1 MTVGVEYGLKSATVRDQN-IQIEIWDTAGQEAYMSLTNSYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAALRQVAREEAEAVAAHQGMEYREVTAKDHTAVQGLFQTTAERIF 133
            MT+GVE+  +S  + D N   +EIWDTAGQE+Y+S+T SYYR  D CL+V+D+T+RESF+ + +W   A+Q ++NP+LV  LVGNKAD    RQ++R E +A A   GM + E+TAK+   V+ +F  +A+R+ 
Sbjct:   43 MTIGVEFDSRSVQLSDGNQANLEIWDTAGQESYLSITRSYYRGTDCCLLVYDVTRRESFDHLPRWLNEAKQNASNPNLVLMLVGNKADLEGSRQISRAEGKAFADLHGMLFVELTAKNQNLVESVFVESAQRVL 176          
BLAST of EWM21552.1 vs. NCBI_GenBank
Match: gi|145534915|ref|XP_001453196.1| (hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|74833742|emb|CAI39341.1| rab_B28 [Paramecium tetraurelia] >gi|124420907|emb|CAK85799.1| unnamed protein product (macronuclear) [Paramecium tetraurelia])

HSP 1 Score: 140.198 bits (352), Expect = 2.652e-38
Identity = 65/134 (48.51%), Postives = 99/134 (73.88%), Query Frame = 0
Query:    1 MTVGVEYGLKSATVRDQNIQIEIWDTAGQEAYMSLTNSYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAALRQVAREEAEAVAAHQGMEYREVTAKDHTAVQGLFQTTAERIFQ 134
            +T+GVE+G +   +  QNI+++IWDTAGQE++ S+T SYYR+A G +IV+D+T+RE+FE +S+W E A+Q + NP L FTLVGNK+D  A RQV+ EE +  A + G+++ EV+AK    V+ +F  TA++I +
Sbjct:   37 VTIGVEFGARMIEIDGQNIKLQIWDTAGQESFRSITRSYYRSAAGAIIVYDITKRETFENISRWLEEAKQ-NGNPKLTFTLVGNKSDLEADRQVSFEEGQEFARNHGVDFVEVSAKTANNVEEVFLKTAQQILE 169          
BLAST of EWM21552.1 vs. NCBI_GenBank
Match: gi|145511982|ref|XP_001441913.1| (hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|74834003|emb|CAI43252.1| rab_A28 [Paramecium tetraurelia] >gi|124409174|emb|CAK74516.1| unnamed protein product (macronuclear) [Paramecium tetraurelia])

HSP 1 Score: 139.813 bits (351), Expect = 4.755e-38
Identity = 65/134 (48.51%), Postives = 98/134 (73.13%), Query Frame = 0
Query:    1 MTVGVEYGLKSATVRDQNIQIEIWDTAGQEAYMSLTNSYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAALRQVAREEAEAVAAHQGMEYREVTAKDHTAVQGLFQTTAERIFQ 134
            +T+GVE+G +      QNI+++IWDTAGQE++ S+T SYYR+A G +IV+D+T+RE+FE +S+W E A+Q + NP L FTLVGNK+D  A RQV+ EE +  A + G+++ EV+AK    V+ +F  TA++I +
Sbjct:   37 VTIGVEFGARMIEFEGQNIKLQIWDTAGQESFRSITRSYYRSAAGAIIVYDITKRETFENISRWLEEAKQ-NGNPKLTFTLVGNKSDLEADRQVSFEEGQEFARNNGIDFVEVSAKTANNVEEVFLKTAQQILE 169          
BLAST of EWM21552.1 vs. NCBI_GenBank
Match: gi|553189805|ref|XP_005855078.1| (rab family gtpase [Nannochloropsis gaditana CCMP526] >gi|422293985|gb|EKU21285.1| rab family gtpase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 134.806 bits (338), Expect = 1.273e-37
Identity = 73/83 (87.95%), Postives = 77/83 (92.77%), Query Frame = 0
Query:   38 SYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAALRQVAREEAEAVAAHQGMEYREVTAKDHTA 120
            SYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAALRQVAREEAEAVAAHQGME ++ + +   A
Sbjct:   10 SYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAALRQVAREEAEAVAAHQGMECKDASGQRSPA 92          
BLAST of EWM21552.1 vs. NCBI_GenBank
Match: gi|167394434|ref|XP_001740967.1| (GTP-binding protein YPTC4 [Entamoeba dispar SAW760] >gi|165894682|gb|EDR22590.1| GTP-binding protein YPTC4, putative [Entamoeba dispar SAW760])

HSP 1 Score: 138.272 bits (347), Expect = 1.352e-37
Identity = 65/139 (46.76%), Postives = 94/139 (67.63%), Query Frame = 0
Query:    1 MTVGVEYGLKSATVRDQNIQIEIWDTAGQEAYMSLTNSYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAALRQVAREEAEAVAAHQGMEYREVTAKDHTAVQGLFQTTAERIFQAFETG 139
            +T+GVE+G K+  ++ Q+++++IWDTAG E + S+T SYYR A G L+V+D++++ESFEK+  W E  R+YS NP+    LVGNK D    RQV +EE EA A   G+ + E +A+D T V   F  TAE IF+  +TG
Sbjct:   66 LTIGVEFGTKTIPIQGQSVKLQIWDTAGSEKFRSITRSYYRGASGALLVYDISRKESFEKIPIWLEECRKYS-NPNTTIMLVGNKCDLPD-RQVTKEEGEAFAKENGLLFLEASARDATNVDNCFLQTAEVIFENVKTG 202          
BLAST of EWM21552.1 vs. NCBI_GenBank
Match: gi|471186607|ref|XP_004183116.1| (GTP-binding protein YPTC4, putative [Entamoeba invadens IP1] >gi|440290344|gb|ELP83770.1| GTP-binding protein YPTC4, putative [Entamoeba invadens IP1])

HSP 1 Score: 137.887 bits (346), Expect = 1.899e-37
Identity = 65/139 (46.76%), Postives = 95/139 (68.35%), Query Frame = 0
Query:    1 MTVGVEYGLKSATVRDQNIQIEIWDTAGQEAYMSLTNSYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAALRQVAREEAEAVAAHQGMEYREVTAKDHTAVQGLFQTTAERIFQAFETG 139
            +T+GVE+G K+  ++ Q+++++IWDTAG E + S+T SYYR A G L+V+D++++ESFEKV  W E  R+YS NP+    LVGNK D    RQV++EE EA A   G+ + E +A+D T V   F  TAE IF+  ++G
Sbjct:   65 LTIGVEFGTKTVPIQGQSVKLQIWDTAGSEKFRSITRSYYRGAAGALLVYDISRKESFEKVPVWLEECRKYS-NPNTTIMLVGNKCDLPE-RQVSKEEGEAFAKENGLLFLEASARDATNVDNCFLQTAEVIFENVKSG 201          
BLAST of EWM21552.1 vs. NCBI_GenBank
Match: gi|1183357979|gb|ORX85488.1| (ras-domain-containing protein [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 137.117 bits (344), Expect = 3.689e-37
Identity = 62/140 (44.29%), Postives = 100/140 (71.43%), Query Frame = 0
Query:    1 MTVGVEYGLKSATVRDQNIQIEIWDTAGQEAYMSLTNSYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAALRQVAREEAEAVAAHQGMEYREVTAKDHTAVQGLFQTTAERIFQAFETGA 140
            +T+GVE+G +  TV +++I++++WDTAGQE++ S+T SYYR A G L+V+D+T+RE+FE ++KW E AR++SN+ ++   L+GNK+D    R V++EE EA A   G+ + E +AK    V+  F  TAERI++  ++G 
Sbjct:   38 LTIGVEFGARFITVDNKSIKLQVWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFEHLAKWLEDAREHSND-NITILLIGNKSDLEGKRAVSKEEGEAFAKEHGLFFLETSAKTSANVEEAFINTAERIYEKIQSGV 176          
BLAST of EWM21552.1 vs. NCBI_GenBank
Match: gi|471227790|ref|XP_004034797.1| (rab2 gtpase, putative, partial [Ichthyophthirius multifiliis] >gi|340504917|gb|EGR31311.1| rab2 gtpase, putative, partial [Ichthyophthirius multifiliis])

HSP 1 Score: 136.732 bits (343), Expect = 4.345e-37
Identity = 69/182 (37.91%), Postives = 110/182 (60.44%), Query Frame = 0
Query:    1 MTVGVEYGLKSATVRDQNIQIEIWDTAGQEAYMSLTNSYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAALRQVAREEAEAVAAHQGMEYREVTAKDHTAVQGLFQTTAERIFQAFETGA--------GLKGGMGGSDIVIDGAGKIRLRSFNSSLSSSAFG 174
            +T+GVE+G +   V+++NI+I+IWDTAGQE + S+T SYYR+A G L+VFD+T+++SF+ + +W E A+Q + NPHL F L+GNK D    RQV+ EEA+  A    + + E +AK    ++  F   A+ IF    TG         G+K G    + +++     +L+  N+  +  +FG
Sbjct:   21 VTIGVEFGARMINVQNKNIKIQIWDTAGQECFRSITRSYYRSAAGALLVFDITRKDSFQNIGRWLEEAKQ-NGNPHLSFVLIGNKCDLEDQRQVSVEEAQNFAKENNLLFLEASAKTSQNIEEAFHQNAKMIFDKINTGVINPNQESNGIKVGNETDNSIVNN---FQLQQKNNIQTKKSFG 198          
The following BLAST results are available for this feature:
BLAST of EWM21552.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585101801|gb|EWM21552.1|4.824e-144100.00rab family gtpase [Nannochloropsis gaditana][more]
gi|299471595|emb|CBN76817.1|2.718e-4048.18Rab2B, RAB family GTPase [Ectocarpus siliculosus][more]
gi|676382623|ref|XP_009034590.1|1.466e-3847.76hypothetical protein AURANDRAFT_22559 [Aureococcus... [more]
gi|145534915|ref|XP_001453196.1|2.652e-3848.51hypothetical protein [Paramecium tetraurelia strai... [more]
gi|145511982|ref|XP_001441913.1|4.755e-3848.51hypothetical protein [Paramecium tetraurelia strai... [more]
gi|553189805|ref|XP_005855078.1|1.273e-3787.95rab family gtpase [Nannochloropsis gaditana CCMP52... [more]
gi|167394434|ref|XP_001740967.1|1.352e-3746.76GTP-binding protein YPTC4 [Entamoeba dispar SAW760... [more]
gi|471186607|ref|XP_004183116.1|1.899e-3746.76GTP-binding protein YPTC4, putative [Entamoeba inv... [more]
gi|1183357979|gb|ORX85488.1|3.689e-3744.29ras-domain-containing protein [Basidiobolus merist... [more]
gi|471227790|ref|XP_004034797.1|4.345e-3737.91rab2 gtpase, putative, partial [Ichthyophthirius m... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9152rna9152Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications