EWM21552.1, cds9122 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21552.1 vs. NCBI_GenBank
Match: gi|585101801|gb|EWM21552.1| (rab family gtpase [Nannochloropsis gaditana]) HSP 1 Score: 407.527 bits (1046), Expect = 4.824e-144 Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0 Query: 1 MTVGVEYGLKSATVRDQNIQIEIWDTAGQEAYMSLTNSYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAALRQVAREEAEAVAAHQGMEYREVTAKDHTAVQGLFQTTAERIFQAFETGAGLKGGMGGSDIVIDGAGKIRLRSFNSSLSSSAFGLSPGRSARSQEMAGNSGKGRCC 196 MTVGVEYGLKSATVRDQNIQIEIWDTAGQEAYMSLTNSYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAALRQVAREEAEAVAAHQGMEYREVTAKDHTAVQGLFQTTAERIFQAFETGAGLKGGMGGSDIVIDGAGKIRLRSFNSSLSSSAFGLSPGRSARSQEMAGNSGKGRCC Sbjct: 1 MTVGVEYGLKSATVRDQNIQIEIWDTAGQEAYMSLTNSYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAALRQVAREEAEAVAAHQGMEYREVTAKDHTAVQGLFQTTAERIFQAFETGAGLKGGMGGSDIVIDGAGKIRLRSFNSSLSSSAFGLSPGRSARSQEMAGNSGKGRCC 196
BLAST of EWM21552.1 vs. NCBI_GenBank
Match: gi|299471595|emb|CBN76817.1| (Rab2B, RAB family GTPase [Ectocarpus siliculosus]) HSP 1 Score: 144.821 bits (364), Expect = 2.718e-40 Identity = 66/137 (48.18%), Postives = 92/137 (67.15%), Query Frame = 0 Query: 1 MTVGVEYGLKSATVRDQNIQIEIWDTAGQEAYMSLTNSYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAALRQVAREEAEAVAAHQGMEYREVTAKDHTAVQGLFQTTAERIFQAFE 137 MT+GVE+G K ++ D +++EIWDTAGQE+++S+T SYYR DGCL+VFD+T R+SFE + +W + AR S NP L L+ NKAD A R V EE +A A G+ + E++A++ V+ F TAERIF E Sbjct: 36 MTIGVEFGAKDVSIGDAQVKLEIWDTAGQESFLSITRSYYRGTDGCLLVFDITDRKSFEALPRWLDEARMNSANPDLSVMLIANKADLAEKRCVTTEEGQAFADKHGLLFMEMSARNAAQVERAFIGTAERIFSDLE 172
BLAST of EWM21552.1 vs. NCBI_GenBank
Match: gi|676382623|ref|XP_009034590.1| (hypothetical protein AURANDRAFT_22559 [Aureococcus anophagefferens] >gi|323455162|gb|EGB11031.1| hypothetical protein AURANDRAFT_22559 [Aureococcus anophagefferens]) HSP 1 Score: 140.584 bits (353), Expect = 1.466e-38 Identity = 64/134 (47.76%), Postives = 94/134 (70.15%), Query Frame = 0 Query: 1 MTVGVEYGLKSATVRDQN-IQIEIWDTAGQEAYMSLTNSYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAALRQVAREEAEAVAAHQGMEYREVTAKDHTAVQGLFQTTAERIF 133 MT+GVE+ +S + D N +EIWDTAGQE+Y+S+T SYYR D CL+V+D+T+RESF+ + +W A+Q ++NP+LV LVGNKAD RQ++R E +A A GM + E+TAK+ V+ +F +A+R+ Sbjct: 43 MTIGVEFDSRSVQLSDGNQANLEIWDTAGQESYLSITRSYYRGTDCCLLVYDVTRRESFDHLPRWLNEAKQNASNPNLVLMLVGNKADLEGSRQISRAEGKAFADLHGMLFVELTAKNQNLVESVFVESAQRVL 176
BLAST of EWM21552.1 vs. NCBI_GenBank
Match: gi|145534915|ref|XP_001453196.1| (hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|74833742|emb|CAI39341.1| rab_B28 [Paramecium tetraurelia] >gi|124420907|emb|CAK85799.1| unnamed protein product (macronuclear) [Paramecium tetraurelia]) HSP 1 Score: 140.198 bits (352), Expect = 2.652e-38 Identity = 65/134 (48.51%), Postives = 99/134 (73.88%), Query Frame = 0 Query: 1 MTVGVEYGLKSATVRDQNIQIEIWDTAGQEAYMSLTNSYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAALRQVAREEAEAVAAHQGMEYREVTAKDHTAVQGLFQTTAERIFQ 134 +T+GVE+G + + QNI+++IWDTAGQE++ S+T SYYR+A G +IV+D+T+RE+FE +S+W E A+Q + NP L FTLVGNK+D A RQV+ EE + A + G+++ EV+AK V+ +F TA++I + Sbjct: 37 VTIGVEFGARMIEIDGQNIKLQIWDTAGQESFRSITRSYYRSAAGAIIVYDITKRETFENISRWLEEAKQ-NGNPKLTFTLVGNKSDLEADRQVSFEEGQEFARNHGVDFVEVSAKTANNVEEVFLKTAQQILE 169
BLAST of EWM21552.1 vs. NCBI_GenBank
Match: gi|145511982|ref|XP_001441913.1| (hypothetical protein [Paramecium tetraurelia strain d4-2] >gi|74834003|emb|CAI43252.1| rab_A28 [Paramecium tetraurelia] >gi|124409174|emb|CAK74516.1| unnamed protein product (macronuclear) [Paramecium tetraurelia]) HSP 1 Score: 139.813 bits (351), Expect = 4.755e-38 Identity = 65/134 (48.51%), Postives = 98/134 (73.13%), Query Frame = 0 Query: 1 MTVGVEYGLKSATVRDQNIQIEIWDTAGQEAYMSLTNSYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAALRQVAREEAEAVAAHQGMEYREVTAKDHTAVQGLFQTTAERIFQ 134 +T+GVE+G + QNI+++IWDTAGQE++ S+T SYYR+A G +IV+D+T+RE+FE +S+W E A+Q + NP L FTLVGNK+D A RQV+ EE + A + G+++ EV+AK V+ +F TA++I + Sbjct: 37 VTIGVEFGARMIEFEGQNIKLQIWDTAGQESFRSITRSYYRSAAGAIIVYDITKRETFENISRWLEEAKQ-NGNPKLTFTLVGNKSDLEADRQVSFEEGQEFARNNGIDFVEVSAKTANNVEEVFLKTAQQILE 169
BLAST of EWM21552.1 vs. NCBI_GenBank
Match: gi|553189805|ref|XP_005855078.1| (rab family gtpase [Nannochloropsis gaditana CCMP526] >gi|422293985|gb|EKU21285.1| rab family gtpase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 134.806 bits (338), Expect = 1.273e-37 Identity = 73/83 (87.95%), Postives = 77/83 (92.77%), Query Frame = 0 Query: 38 SYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAALRQVAREEAEAVAAHQGMEYREVTAKDHTA 120 SYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAALRQVAREEAEAVAAHQGME ++ + + A Sbjct: 10 SYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAALRQVAREEAEAVAAHQGMECKDASGQRSPA 92
BLAST of EWM21552.1 vs. NCBI_GenBank
Match: gi|167394434|ref|XP_001740967.1| (GTP-binding protein YPTC4 [Entamoeba dispar SAW760] >gi|165894682|gb|EDR22590.1| GTP-binding protein YPTC4, putative [Entamoeba dispar SAW760]) HSP 1 Score: 138.272 bits (347), Expect = 1.352e-37 Identity = 65/139 (46.76%), Postives = 94/139 (67.63%), Query Frame = 0 Query: 1 MTVGVEYGLKSATVRDQNIQIEIWDTAGQEAYMSLTNSYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAALRQVAREEAEAVAAHQGMEYREVTAKDHTAVQGLFQTTAERIFQAFETG 139 +T+GVE+G K+ ++ Q+++++IWDTAG E + S+T SYYR A G L+V+D++++ESFEK+ W E R+YS NP+ LVGNK D RQV +EE EA A G+ + E +A+D T V F TAE IF+ +TG Sbjct: 66 LTIGVEFGTKTIPIQGQSVKLQIWDTAGSEKFRSITRSYYRGASGALLVYDISRKESFEKIPIWLEECRKYS-NPNTTIMLVGNKCDLPD-RQVTKEEGEAFAKENGLLFLEASARDATNVDNCFLQTAEVIFENVKTG 202
BLAST of EWM21552.1 vs. NCBI_GenBank
Match: gi|471186607|ref|XP_004183116.1| (GTP-binding protein YPTC4, putative [Entamoeba invadens IP1] >gi|440290344|gb|ELP83770.1| GTP-binding protein YPTC4, putative [Entamoeba invadens IP1]) HSP 1 Score: 137.887 bits (346), Expect = 1.899e-37 Identity = 65/139 (46.76%), Postives = 95/139 (68.35%), Query Frame = 0 Query: 1 MTVGVEYGLKSATVRDQNIQIEIWDTAGQEAYMSLTNSYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAALRQVAREEAEAVAAHQGMEYREVTAKDHTAVQGLFQTTAERIFQAFETG 139 +T+GVE+G K+ ++ Q+++++IWDTAG E + S+T SYYR A G L+V+D++++ESFEKV W E R+YS NP+ LVGNK D RQV++EE EA A G+ + E +A+D T V F TAE IF+ ++G Sbjct: 65 LTIGVEFGTKTVPIQGQSVKLQIWDTAGSEKFRSITRSYYRGAAGALLVYDISRKESFEKVPVWLEECRKYS-NPNTTIMLVGNKCDLPE-RQVSKEEGEAFAKENGLLFLEASARDATNVDNCFLQTAEVIFENVKSG 201
BLAST of EWM21552.1 vs. NCBI_GenBank
Match: gi|1183357979|gb|ORX85488.1| (ras-domain-containing protein [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 137.117 bits (344), Expect = 3.689e-37 Identity = 62/140 (44.29%), Postives = 100/140 (71.43%), Query Frame = 0 Query: 1 MTVGVEYGLKSATVRDQNIQIEIWDTAGQEAYMSLTNSYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAALRQVAREEAEAVAAHQGMEYREVTAKDHTAVQGLFQTTAERIFQAFETGA 140 +T+GVE+G + TV +++I++++WDTAGQE++ S+T SYYR A G L+V+D+T+RE+FE ++KW E AR++SN+ ++ L+GNK+D R V++EE EA A G+ + E +AK V+ F TAERI++ ++G Sbjct: 38 LTIGVEFGARFITVDNKSIKLQVWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFEHLAKWLEDAREHSND-NITILLIGNKSDLEGKRAVSKEEGEAFAKEHGLFFLETSAKTSANVEEAFINTAERIYEKIQSGV 176
BLAST of EWM21552.1 vs. NCBI_GenBank
Match: gi|471227790|ref|XP_004034797.1| (rab2 gtpase, putative, partial [Ichthyophthirius multifiliis] >gi|340504917|gb|EGR31311.1| rab2 gtpase, putative, partial [Ichthyophthirius multifiliis]) HSP 1 Score: 136.732 bits (343), Expect = 4.345e-37 Identity = 69/182 (37.91%), Postives = 110/182 (60.44%), Query Frame = 0 Query: 1 MTVGVEYGLKSATVRDQNIQIEIWDTAGQEAYMSLTNSYYRNADGCLIVFDLTQRESFEKVSKWAEHARQYSNNPHLVFTLVGNKADQAALRQVAREEAEAVAAHQGMEYREVTAKDHTAVQGLFQTTAERIFQAFETGA--------GLKGGMGGSDIVIDGAGKIRLRSFNSSLSSSAFG 174 +T+GVE+G + V+++NI+I+IWDTAGQE + S+T SYYR+A G L+VFD+T+++SF+ + +W E A+Q + NPHL F L+GNK D RQV+ EEA+ A + + E +AK ++ F A+ IF TG G+K G + +++ +L+ N+ + +FG Sbjct: 21 VTIGVEFGARMINVQNKNIKIQIWDTAGQECFRSITRSYYRSAAGALLVFDITRKDSFQNIGRWLEEAKQ-NGNPHLSFVLIGNKCDLEDQRQVSVEEAQNFAKENNLLFLEASAKTSQNIEEAFHQNAKMIFDKINTGVINPNQESNGIKVGNETDNSIVNN---FQLQQKNNIQTKKSFG 198 The following BLAST results are available for this feature:
BLAST of EWM21552.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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