EWM21558.1, cds9115 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21558.1 vs. NCBI_GenBank
Match: gi|553178763|ref|XP_005852601.1| (hypothetical protein NGA_0712000 [Nannochloropsis gaditana CCMP526] >gi|422295933|gb|EKU23232.1| hypothetical protein NGA_0712000 [Nannochloropsis gaditana CCMP526] >gi|585101812|gb|EWM21558.1| Golgi apparatus membrane protein TVP15 [Nannochloropsis gaditana]) HSP 1 Score: 386.341 bits (991), Expect = 6.743e-136 Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0 Query: 1 MPSDASLPSHATPNPPPGHVRDRVRAHAALKIFTVINWITIIAAILAAIAELLSLIYTKPRTLPGFTVRLYCLFFLLVIVLSEIEWSKPVRDSAITTSWFWRGAFQVFVAALVYEMQPGGDNLSAVKRNFIAFAAIVLLVVGFLYAAMGLCFVKRWRDTQLAKYRTMRAHAEMADALQNDASLAGSPQA 189 MPSDASLPSHATPNPPPGHVRDRVRAHAALKIFTVINWITIIAAILAAIAELLSLIYTKPRTLPGFTVRLYCLFFLLVIVLSEIEWSKPVRDSAITTSWFWRGAFQVFVAALVYEMQPGGDNLSAVKRNFIAFAAIVLLVVGFLYAAMGLCFVKRWRDTQLAKYRTMRAHAEMADALQNDASLAGSPQA Sbjct: 1 MPSDASLPSHATPNPPPGHVRDRVRAHAALKIFTVINWITIIAAILAAIAELLSLIYTKPRTLPGFTVRLYCLFFLLVIVLSEIEWSKPVRDSAITTSWFWRGAFQVFVAALVYEMQPGGDNLSAVKRNFIAFAAIVLLVVGFLYAAMGLCFVKRWRDTQLAKYRTMRAHAEMADALQNDASLAGSPQA 189
BLAST of EWM21558.1 vs. NCBI_GenBank
Match: gi|299472398|emb|CBN77586.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 95.5153 bits (236), Expect = 1.701e-21 Identity = 53/145 (36.55%), Postives = 85/145 (58.62%), Query Frame = 0 Query: 37 NWITIIAAILAAIAELLSLIYTKPRTLPGFTVRLYCLFFLLVIVLSEIEWSKPVRDSAITTSWFWRGAFQVFVAALVYEMQ-PGGDNLSAVKRNFIAFAAIVLLVVGFLYAAMGLCFVKRWRDTQLAKYRTMRAHAEMADALQND 180 N IT+IAA+ +A+ + L Y K + VR Y + F ++I+++E+EW+ VR+ + SW RG FV LV E + G +L +I A +++ +G LY +GLC VKR RD ++A+++T+ AHAEM A++ D Sbjct: 23 NAITVIAALGVGVAQGMVLGYHKDLSPESVAVRCYNILFCMLIIMAELEWTTTVREMFVLHSWIPRGVVYSFVGVLVLEEEDEKGLDLGGFGL-YITIIAWIMVGIGALYFLLGLCCVKRIRDKKMARHKTLVAHAEMQAAMRRD 166
BLAST of EWM21558.1 vs. NCBI_GenBank
Match: gi|585110883|gb|EWM28473.1| (Golgi apparatus membrane protein TVP15 [Nannochloropsis gaditana]) HSP 1 Score: 82.8037 bits (203), Expect = 1.539e-15 Identity = 50/164 (30.49%), Postives = 89/164 (54.27%), Query Frame = 0 Query: 21 RDRVRAHAALKIFTVINWITIIAAILAAIAELLSLIYTKPRTLPGFTVRLYCLFFLLVIVLSEIEWSKPVRDSAITTSWFWRGAFQVFVAALVYEMQPGGDNLSAVKRNFIAFAAIVLLVVGFLYAAMGLCFVKRWRDTQLAKYRTMRAHAEMADALQNDASLA 184 R +R L IF IN + +++A+ A+AE+LS++Y L G +R+Y + F + +V +E+ W++ VRD+ + +W RGA FV L + + + + FI A + L+ +G LY MG+ +K RD + A Y +++ AE+ +AL+ + Sbjct: 101 RQDIRRGCCLSIFLAINAVCVLSALSVAVAEILSIVYHGLSPL-GIAIRVYGIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYTFVGLLSIKQEVEHEARINIVNVFIYCAGLGLIGLGVLYFVMGVFCLKGVRDRRAADYTILKSQAELEEALRRHGDVG 263 The following BLAST results are available for this feature:
BLAST of EWM21558.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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