EWM21685.1, cds8988 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM21685.1 vs. NCBI_GenBank
Match: gi|585101966|gb|EWM21685.1| (hypothetical protein Naga_101376g1 [Nannochloropsis gaditana]) HSP 1 Score: 251.906 bits (642), Expect = 1.010e-84 Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
Query: 1 MRPHPSDPNKTLLVTLTHINPGGSIDSKAGALMVNKLSSTSPVSFVRKIEFAARKGWDEMEEGREGWRGRWVERVMWRDRERVMRSHDRQIGDPGKVKKILGVEPVEKRRTEMQSLEWERLMTVV 125
MRPHPSDPNKTLLVTLTHINPGGSIDSKAGALMVNKLSSTSPVSFVRKIEFAARKGWDEMEEGREGWRGRWVERVMWRDRERVMRSHDRQIGDPGKVKKILGVEPVEKRRTEMQSLEWERLMTVV
Sbjct: 1 MRPHPSDPNKTLLVTLTHINPGGSIDSKAGALMVNKLSSTSPVSFVRKIEFAARKGWDEMEEGREGWRGRWVERVMWRDRERVMRSHDRQIGDPGKVKKILGVEPVEKRRTEMQSLEWERLMTVV 125
BLAST of EWM21685.1 vs. NCBI_GenBank
Match: gi|299472189|emb|CBN79692.2| (conserved unknown protein (Partial), partial [Ectocarpus siliculosus]) HSP 1 Score: 74.7146 bits (182), Expect = 3.921e-13 Identity = 29/62 (46.77%), Postives = 50/62 (80.65%), Query Frame = 0
Query: 1 MRPHPSDPNKTLLVTLTHINPGGSIDSKAGALMVNKLSSTSPVSFVRKIEFAARKGWDEMEE 62
MRP P DP++T + +TH+NPGG+ +++AGA++VN L ++SPV+F+R++E AA+K E+++
Sbjct: 509 MRPVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCTSSPVTFIRRLEVAAKKLMLELQQ 570
BLAST of EWM21685.1 vs. NCBI_GenBank
Match: gi|551656396|ref|XP_005830971.1| (hypothetical protein GUITHDRAFT_153123 [Guillardia theta CCMP2712] >gi|428175099|gb|EKX43991.1| hypothetical protein GUITHDRAFT_153123 [Guillardia theta CCMP2712]) HSP 1 Score: 69.707 bits (169), Expect = 1.876e-11 Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = 0
Query: 1 MRPHPSDPNKTLLVTLTHINPGGSIDSKAGALMVNKLSSTSPVSFVRKIEFAARKG 56
MRP P DPNKT T+ HINPGG+ D+ GA + N++ PVSF+RKIE KG
Sbjct: 358 MRPCPDDPNKTEFTTIAHINPGGAADTPLGAQITNRICIHGPVSFIRKIETVCGKG 413
BLAST of EWM21685.1 vs. NCBI_GenBank
Match: gi|551655476|ref|XP_005830512.1| (hypothetical protein GUITHDRAFT_110336 [Guillardia theta CCMP2712] >gi|428174638|gb|EKX43532.1| hypothetical protein GUITHDRAFT_110336 [Guillardia theta CCMP2712]) HSP 1 Score: 61.6178 bits (148), Expect = 1.510e-8 Identity = 30/65 (46.15%), Postives = 43/65 (66.15%), Query Frame = 0
Query: 1 MRPHPSDPNKTLLVTLTHINPGGSIDSKAGALMVNKLSSTSPVSFVRKIEFAARKGWDEMEEGRE 65
MR SDPNKTL +TH+NPGG ++ GA++ N+LS+ SP F++K+ AA G ++ E RE
Sbjct: 463 MRRLDSDPNKTLFTLITHVNPGGLATTQFGAMLTNRLSTESPRQFLQKLNEAAAAG-QQLPEQRE 526
BLAST of EWM21685.1 vs. NCBI_GenBank
Match: gi|299469624|emb|CBN76478.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 59.3066 bits (142), Expect = 9.554e-8 Identity = 26/53 (49.06%), Postives = 39/53 (73.58%), Query Frame = 0
Query: 1 MRPHPSDPNKTLLVTLTHINPGGSIDSKAGALMVNKLSSTSPVSFVRKIEFAA 53
MRP+ DP+KT +++THINPGG DS+ GA +VNKL + +PV+ + +E +A
Sbjct: 417 MRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSA 469 The following BLAST results are available for this feature:
BLAST of EWM21685.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|