EWM21685.1, cds8988 (CDS) Nannochloropsis gaditana

Overview
NameEWM21685.1
Unique Namecds8988
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:116624..116711 +
Alignment locationKK037251.1:116962..117251 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21685.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101376g1.10436.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:116624..116711 +
KK037251.1supercontigKK037251.1:116962..117251 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008289lipid binding
Vocabulary: INTERPRO
TermDefinition
IPR023393START-like_dom
Homology
BLAST of EWM21685.1 vs. NCBI_GenBank
Match: gi|585101966|gb|EWM21685.1| (hypothetical protein Naga_101376g1 [Nannochloropsis gaditana])

HSP 1 Score: 251.906 bits (642), Expect = 1.010e-84
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
Query:    1 MRPHPSDPNKTLLVTLTHINPGGSIDSKAGALMVNKLSSTSPVSFVRKIEFAARKGWDEMEEGREGWRGRWVERVMWRDRERVMRSHDRQIGDPGKVKKILGVEPVEKRRTEMQSLEWERLMTVV 125
            MRPHPSDPNKTLLVTLTHINPGGSIDSKAGALMVNKLSSTSPVSFVRKIEFAARKGWDEMEEGREGWRGRWVERVMWRDRERVMRSHDRQIGDPGKVKKILGVEPVEKRRTEMQSLEWERLMTVV
Sbjct:    1 MRPHPSDPNKTLLVTLTHINPGGSIDSKAGALMVNKLSSTSPVSFVRKIEFAARKGWDEMEEGREGWRGRWVERVMWRDRERVMRSHDRQIGDPGKVKKILGVEPVEKRRTEMQSLEWERLMTVV 125          
BLAST of EWM21685.1 vs. NCBI_GenBank
Match: gi|299472189|emb|CBN79692.2| (conserved unknown protein (Partial), partial [Ectocarpus siliculosus])

HSP 1 Score: 74.7146 bits (182), Expect = 3.921e-13
Identity = 29/62 (46.77%), Postives = 50/62 (80.65%), Query Frame = 0
Query:    1 MRPHPSDPNKTLLVTLTHINPGGSIDSKAGALMVNKLSSTSPVSFVRKIEFAARKGWDEMEE 62
            MRP P DP++T  + +TH+NPGG+ +++AGA++VN L ++SPV+F+R++E AA+K   E+++
Sbjct:  509 MRPVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCTSSPVTFIRRLEVAAKKLMLELQQ 570          
BLAST of EWM21685.1 vs. NCBI_GenBank
Match: gi|551656396|ref|XP_005830971.1| (hypothetical protein GUITHDRAFT_153123 [Guillardia theta CCMP2712] >gi|428175099|gb|EKX43991.1| hypothetical protein GUITHDRAFT_153123 [Guillardia theta CCMP2712])

HSP 1 Score: 69.707 bits (169), Expect = 1.876e-11
Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = 0
Query:    1 MRPHPSDPNKTLLVTLTHINPGGSIDSKAGALMVNKLSSTSPVSFVRKIEFAARKG 56
            MRP P DPNKT   T+ HINPGG+ D+  GA + N++    PVSF+RKIE    KG
Sbjct:  358 MRPCPDDPNKTEFTTIAHINPGGAADTPLGAQITNRICIHGPVSFIRKIETVCGKG 413          
BLAST of EWM21685.1 vs. NCBI_GenBank
Match: gi|551655476|ref|XP_005830512.1| (hypothetical protein GUITHDRAFT_110336 [Guillardia theta CCMP2712] >gi|428174638|gb|EKX43532.1| hypothetical protein GUITHDRAFT_110336 [Guillardia theta CCMP2712])

HSP 1 Score: 61.6178 bits (148), Expect = 1.510e-8
Identity = 30/65 (46.15%), Postives = 43/65 (66.15%), Query Frame = 0
Query:    1 MRPHPSDPNKTLLVTLTHINPGGSIDSKAGALMVNKLSSTSPVSFVRKIEFAARKGWDEMEEGRE 65
            MR   SDPNKTL   +TH+NPGG   ++ GA++ N+LS+ SP  F++K+  AA  G  ++ E RE
Sbjct:  463 MRRLDSDPNKTLFTLITHVNPGGLATTQFGAMLTNRLSTESPRQFLQKLNEAAAAG-QQLPEQRE 526          
BLAST of EWM21685.1 vs. NCBI_GenBank
Match: gi|299469624|emb|CBN76478.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 59.3066 bits (142), Expect = 9.554e-8
Identity = 26/53 (49.06%), Postives = 39/53 (73.58%), Query Frame = 0
Query:    1 MRPHPSDPNKTLLVTLTHINPGGSIDSKAGALMVNKLSSTSPVSFVRKIEFAA 53
            MRP+  DP+KT  +++THINPGG  DS+ GA +VNKL + +PV+ +  +E +A
Sbjct:  417 MRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSA 469          
The following BLAST results are available for this feature:
BLAST of EWM21685.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585101966|gb|EWM21685.1|1.010e-84100.00hypothetical protein Naga_101376g1 [Nannochloropsi... [more]
gi|299472189|emb|CBN79692.2|3.921e-1346.77conserved unknown protein (Partial), partial [Ecto... [more]
gi|551656396|ref|XP_005830971.1|1.876e-1153.57hypothetical protein GUITHDRAFT_153123 [Guillardia... [more]
gi|551655476|ref|XP_005830512.1|1.510e-846.15hypothetical protein GUITHDRAFT_110336 [Guillardia... [more]
gi|299469624|emb|CBN76478.1|9.554e-849.06conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9018rna9018Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications