EWM21690.1, cds8983 (CDS) Nannochloropsis gaditana

Overview
NameEWM21690.1
Unique Namecds8983
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037251.1:106606..108039 -

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Properties
Property NameValue
Protein idEWM21690.1
ProductWD40/YVTN repeat-like-containing domain protein
Orig transcript idgnl|cribi|Naga_100939g2.2053.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:106606..108039 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011044Quino_amine_DH_bsu
IPR015943WD40/YVTN_repeat-like_dom
Homology
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BLAST of EWM21690.1 vs. NCBI_GenBank
Match: gi|585101975|gb|EWM21690.1| (WD40/YVTN repeat-like-containing domain protein [Nannochloropsis gaditana])

HSP 1 Score: 941.799 bits (2433), Expect = 0.000e+0
Identity = 477/477 (100.00%), Postives = 477/477 (100.00%), Query Frame = 0 
Query:    1 MVARTAVDNGLQLSTTPFIYMYHPLSSPLTTPRPLKPPDASYPAFFSAGGQQATRLAALDMYTCYVASHAHVFRLLLKYPPALSFSSSSPSPPSHLRLLQHVAVDRLLPPPSSFTPSRPHPGSEIQSLALHPDKTRLAAINSMATVHLYSLPTSSSLPTSPPTSLPSPAPPGNFPLFGWAGLAFHPHNPSRLATVRAYGQTLAFLDLTTSSLPVSSSPPSSHHLCDVPTSLLYLPSSLSPLLAVAEGSSFSLWDERDAHPCIAREQPLPLTRIRALGREGGREGGREGGREGGKGLLVAGEDGVLMRYDLRCLSRPVERTREGGGKGGREGGREGGKEGGNVRSLVLRCQARWRAPVKHNIIALFFAGRKRGREGGKEGGREGGGEELLGWDGQRAAEVFAPIGREEGGEEGGRGETEAKTRTEGQSRRTLEGGREGGRDGGRDGEREGGRVRGQSRRRLSTPSTEGKLARRGGRSS 477
            MVARTAVDNGLQLSTTPFIYMYHPLSSPLTTPRPLKPPDASYPAFFSAGGQQATRLAALDMYTCYVASHAHVFRLLLKYPPALSFSSSSPSPPSHLRLLQHVAVDRLLPPPSSFTPSRPHPGSEIQSLALHPDKTRLAAINSMATVHLYSLPTSSSLPTSPPTSLPSPAPPGNFPLFGWAGLAFHPHNPSRLATVRAYGQTLAFLDLTTSSLPVSSSPPSSHHLCDVPTSLLYLPSSLSPLLAVAEGSSFSLWDERDAHPCIAREQPLPLTRIRALGREGGREGGREGGREGGKGLLVAGEDGVLMRYDLRCLSRPVERTREGGGKGGREGGREGGKEGGNVRSLVLRCQARWRAPVKHNIIALFFAGRKRGREGGKEGGREGGGEELLGWDGQRAAEVFAPIGREEGGEEGGRGETEAKTRTEGQSRRTLEGGREGGRDGGRDGEREGGRVRGQSRRRLSTPSTEGKLARRGGRSS
Sbjct:    1 MVARTAVDNGLQLSTTPFIYMYHPLSSPLTTPRPLKPPDASYPAFFSAGGQQATRLAALDMYTCYVASHAHVFRLLLKYPPALSFSSSSPSPPSHLRLLQHVAVDRLLPPPSSFTPSRPHPGSEIQSLALHPDKTRLAAINSMATVHLYSLPTSSSLPTSPPTSLPSPAPPGNFPLFGWAGLAFHPHNPSRLATVRAYGQTLAFLDLTTSSLPVSSSPPSSHHLCDVPTSLLYLPSSLSPLLAVAEGSSFSLWDERDAHPCIAREQPLPLTRIRALGREGGREGGREGGREGGKGLLVAGEDGVLMRYDLRCLSRPVERTREGGGKGGREGGREGGKEGGNVRSLVLRCQARWRAPVKHNIIALFFAGRKRGREGGKEGGREGGGEELLGWDGQRAAEVFAPIGREEGGEEGGRGETEAKTRTEGQSRRTLEGGREGGRDGGRDGEREGGRVRGQSRRRLSTPSTEGKLARRGGRSS 477
The following BLAST results are available for this feature:
BLAST of EWM21690.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585101975|gb|EWM21690.1|0.000e+0100.00WD40/YVTN repeat-like-containing domain protein [N... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9013rna9013Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications