rna9013, rna9013 (mRNA) Nannochloropsis gaditana

Overview
Namerna9013
Unique Namerna9013
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length933
Alignment locationKK037251.1:106567..108529 -

Link to JBrowse

Properties
Property NameValue
ProductWD40/YVTN repeat-like-containing domain protein
Orig transcript idgnl|cribi|Naga_100939g2.2053.mrna
Orig protein idgnl|cribi|Naga_100939g2.2053
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:106567..108529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100939g2gene8739Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21690.1cds8983Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9013rna9013-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9013 ID=rna9013|Name=rna9013|organism=Nannochloropsis gaditana|type=mRNA|length=933bp
GGCCTCGTGCGGTGGGTTGTAATTTTGGGCCAGGGGATGAAGAAAACTGG
GGTAAGTAGCGGGAGCCGTCAGGGAGGAGCTGGAAGCCACAGCCGCATTA
CACTTGTGCCTCGATTTAATCCTCAGTAAATAAGTTTTAGACCGGGTGTT
GGACATGGACATCCTGTAAAATCTTGGGGGTCGAAGCGGATGCTCCCGAG
GTGGTTTTCGGGTGTGTTTGTTGCTTCTTTGCGAGGTTTTTGTCGCAGGT
GTGCGTCTGCCTTGTCAATAACTGTTGGCTTTGACCTTCAGTTTTTCGTT
TATCTTTGCAGTTGCCCGTGTCACGCATTCAGTCCCACCGCGAACTCTGC
CGCTTAAGTTGTTTTGGGGGGTTTTAATGCGACAAGGCCCGTGCCCGGCA
TCGTGTTGAGCCAAGCCTCTGACCATGCCCCCGGGGGGTAAGAATATGCC
TGGAATCTGGCCTGTTTTCTAAGCCCATGCACATCCTAAAGGCACAATCT
ACATGTTTCCCGGCATTTCTATCTATCATTCACGCACACATCTCACGACG
TTTCCATTTCCACCCTGCGTAGACCCTTTCCGTGGGGGACCAGGACCCTC
CAGAGCCCGCCTTCCCCGTGCGTCCTCCTACCCACTGGAATTCTCCACAT
CCCTTATGCTTTTCCACCTCCGACACACGGGCTTGTGGCTAGACGGGATG
GCCATCGGGTCCGGGGCGGTGTGCGGGGCCTTGTTGCGGTACGGCGCCGT
CAAAGTCCAAGAGCGGACAAAGTGTGCCCCATGGGCCATCCCCTGTATCA
ACGTTGCAGGCTCGTTCGTTTTAAGCGCCCTGTCCGTCAGCACGCAGGTG
GACCCACGCTTCCGCCTCATGCTAGGGGTGGGCTTCTGCGGTGAGGGGGG
GGGCGGTCGTGGGGGAGGAGGGGGGAGGGGGCC
back to top

protein sequence of rna9013

>rna9013-protein ID=rna9013-protein|Name=rna9013|organism=Nannochloropsis gaditana|type=polypeptide|length=477bp
MVARTAVDNGLQLSTTPFIYMYHPLSSPLTTPRPLKPPDASYPAFFSAGG
QQATRLAALDMYTCYVASHAHVFRLLLKYPPALSFSSSSPSPPSHLRLLQ
HVAVDRLLPPPSSFTPSRPHPGSEIQSLALHPDKTRLAAINSMATVHLYS
LPTSSSLPTSPPTSLPSPAPPGNFPLFGWAGLAFHPHNPSRLATVRAYGQ
TLAFLDLTTSSLPVSSSPPSSHHLCDVPTSLLYLPSSLSPLLAVAEGSSF
SLWDERDAHPCIAREQPLPLTRIRALGREGGREGGREGGREGGKGLLVAG
EDGVLMRYDLRCLSRPVERTREGGGKGGREGGREGGKEGGNVRSLVLRCQ
ARWRAPVKHNIIALFFAGRKRGREGGKEGGREGGGEELLGWDGQRAAEVF
APIGREEGGEEGGRGETEAKTRTEGQSRRTLEGGREGGRDGGRDGEREGG
RVRGQSRRRLSTPSTEGKLARRGGRSS
back to top

mRNA from alignment at KK037251.1:106567..108529-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9013 ID=rna9013|Name=rna9013|organism=Nannochloropsis gaditana|type=mRNA|length=1963bp|location=Sequence derived from alignment at KK037251.1:106567..108529- (Nannochloropsis gaditana)
CGAACGGAAGACGAAAAAAAACGAAAAAAACGAAAAGCAACCACAATCGC
TGCCCGTTCCCTCGGCCCCCACATGCTTTCCAAGCTTAACGACGCTTTCA
CACGGGGTAAGTCACGATCGTGACTGCTTAATTAAAATTTTCGGGCATAT
TCCTCCCCCCCCGAATAAAAGCCGTACGCACGCCTAGCCCGCAAGGGCTG
TCAGAGACCAAGCCCGGATAAAATGAGAAGGGGGGTGATGGAATGCCTGC
TACGATCACGGCATTGTCAAGCTGTGATGTATCCTGTGCATCACGTGACG
CGCAGGACAGCTTGCAGGTCTTCCCTTTTGCACACGCGGACGTTTCTTCC
TTTTCCCTGCCCTCGTGACACCTCCTACAGAGAAATACGTGTCCTACCGG
GCTCCGACATAAGCTCTGATTCCAAGTCCCTGTGACGAATGTCGGTTCTG
CCATTTTCTCCACGGACACACCTCGCACACTCACGGTAAAATGGTAGCTC
GGACTGCTGTGGACAATGGCTTGCAGCTCTCCACCACGCCATTTATTTAC
ATGTACCATCCCCTGTCTTCGCCCCTCACAACCCCCCGCCCGCTGAAGCC
ACCAGATGCGAGCTACCCAGCTTTTTTCTCAGCAGGGGGGCAGCAAGCTA
CTCGATTGGCTGCATTGGATATGTACACCTGCTATGTAGCTTCTCACGCG
CACGTTTTTCGCTTACTCCTCAAGTACCCCCCAGCACTCTCCTTTTCCTC
TTCCTCTCCTTCGCCGCCAAGCCATCTCCGCCTCCTACAACACGTCGCTG
TCGATCGTCTCCTCCCACCTCCCTCCTCCTTCACCCCTTCACGTCCTCAT
CCCGGCTCGGAAATTCAATCGCTCGCTCTACATCCCGACAAGACGCGTCT
CGCTGCCATCAACAGCATGGCCACCGTCCACCTGTATTCCCTCCCAACCT
CGTCATCCCTCCCTACCTCGCCCCCGACCTCCCTCCCTTCCCCCGCCCCT
CCCGGCAATTTTCCATTATTTGGTTGGGCCGGTCTTGCCTTCCATCCTCA
TAACCCCTCCCGCCTGGCCACCGTGCGTGCCTACGGCCAAACCCTAGCCT
TCCTCGACCTCACCACCTCCTCCCTCCCTGTCTCCTCCTCCCCACCTTCT
TCCCATCACCTCTGCGACGTTCCCACATCCCTCTTATACCTTCCCTCCTC
ACTCTCCCCCCTCCTGGCCGTGGCAGAAGGGTCCTCTTTCTCCCTCTGGG
ATGAGAGGGATGCGCATCCCTGTATCGCACGCGAGCAACCCCTACCCTTA
ACCCGGATCCGGGCACTGGGGAGGGAGGGAGGAAGAGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAAAGGCTTGCTGGTGGCAGGCGAGGATGGTG
TGCTGATGCGGTACGACCTTCGATGCTTGTCGCGGCCGGTGGAGCGGACG
AGGGAGGGAGGGGGGAAGGGAGGGAGGGAAGGAGGGCGGGAGGGAGGGAA
GGAGGGAGGGAACGTGAGGTCTTTGGTCTTGCGCTGTCAGGCTCGATGGC
GGGCGCCTGTGAAGCACAACATTATCGCTCTCTTTTTCGCTGGAAGGAAG
CGAGGGAGGGAAGGAGGAAAGGAGGGAGGGAGGGAGGGAGGGGGCGAGGA
GCTACTTGGCTGGGATGGACAGCGAGCTGCTGAGGTGTTCGCCCCCATAG
GGAGGGAGGAAGGGGGGGAGGAGGGGGGGAGGGGAGAGACCGAAGCGAAA
ACGCGGACGGAGGGACAAAGCCGACGAACGTTGGAAGGAGGGCGGGAAGG
AGGGCGGGACGGAGGGCGGGACGGAGAGCGGGAGGGAGGACGTGTGCGCG
GCCAATCCAGACGACGCCTTTCCACGCCCTCCACCGAGGGAAAGCTCGCA
AGGAGAGGAGGGCGCTCGTCTTGACACACAAGAGGAAAGGAGGGAAGGAC
GAGGGAGGAAGAG
back to top

Coding sequence (CDS) from alignment at KK037251.1:106567..108529-

>rna9013 ID=rna9013|Name=rna9013|organism=Nannochloropsis gaditana|type=CDS|length=1434bp|location=Sequence derived from alignment at KK037251.1:106567..108529- (Nannochloropsis gaditana)
ATGGTAGCTCGGACTGCTGTGGACAATGGCTTGCAGCTCTCCACCACGCC
ATTTATTTACATGTACCATCCCCTGTCTTCGCCCCTCACAACCCCCCGCC
CGCTGAAGCCACCAGATGCGAGCTACCCAGCTTTTTTCTCAGCAGGGGGG
CAGCAAGCTACTCGATTGGCTGCATTGGATATGTACACCTGCTATGTAGC
TTCTCACGCGCACGTTTTTCGCTTACTCCTCAAGTACCCCCCAGCACTCT
CCTTTTCCTCTTCCTCTCCTTCGCCGCCAAGCCATCTCCGCCTCCTACAA
CACGTCGCTGTCGATCGTCTCCTCCCACCTCCCTCCTCCTTCACCCCTTC
ACGTCCTCATCCCGGCTCGGAAATTCAATCGCTCGCTCTACATCCCGACA
AGACGCGTCTCGCTGCCATCAACAGCATGGCCACCGTCCACCTGTATTCC
CTCCCAACCTCGTCATCCCTCCCTACCTCGCCCCCGACCTCCCTCCCTTC
CCCCGCCCCTCCCGGCAATTTTCCATTATTTGGTTGGGCCGGTCTTGCCT
TCCATCCTCATAACCCCTCCCGCCTGGCCACCGTGCGTGCCTACGGCCAA
ACCCTAGCCTTCCTCGACCTCACCACCTCCTCCCTCCCTGTCTCCTCCTC
CCCACCTTCTTCCCATCACCTCTGCGACGTTCCCACATCCCTCTTATACC
TTCCCTCCTCACTCTCCCCCCTCCTGGCCGTGGCAGAAGGGTCCTCTTTC
TCCCTCTGGGATGAGAGGGATGCGCATCCCTGTATCGCACGCGAGCAACC
CCTACCCTTAACCCGGATCCGGGCACTGGGGAGGGAGGGAGGAAGAGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAAGGCTTGCTGGTGGCAGGC
GAGGATGGTGTGCTGATGCGGTACGACCTTCGATGCTTGTCGCGGCCGGT
GGAGCGGACGAGGGAGGGAGGGGGGAAGGGAGGGAGGGAAGGAGGGCGGG
AGGGAGGGAAGGAGGGAGGGAACGTGAGGTCTTTGGTCTTGCGCTGTCAG
GCTCGATGGCGGGCGCCTGTGAAGCACAACATTATCGCTCTCTTTTTCGC
TGGAAGGAAGCGAGGGAGGGAAGGAGGAAAGGAGGGAGGGAGGGAGGGAG
GGGGCGAGGAGCTACTTGGCTGGGATGGACAGCGAGCTGCTGAGGTGTTC
GCCCCCATAGGGAGGGAGGAAGGGGGGGAGGAGGGGGGGAGGGGAGAGAC
CGAAGCGAAAACGCGGACGGAGGGACAAAGCCGACGAACGTTGGAAGGAG
GGCGGGAAGGAGGGCGGGACGGAGGGCGGGACGGAGAGCGGGAGGGAGGA
CGTGTGCGCGGCCAATCCAGACGACGCCTTTCCACGCCCTCCACCGAGGG
AAAGCTCGCAAGGAGAGGAGGGCGCTCGTCTTGA
back to top
Synonyms
Publications