rna8998, rna8998 (mRNA) Nannochloropsis gaditana

Overview
Namerna8998
Unique Namerna8998
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1332
Alignment locationKK037251.1:53795..54988 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101179g1.108.mrna
Orig protein idgnl|cribi|Naga_101179g1.108
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:53795..54988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101179g1gene8724Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8998rna8998-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21705.1cds8968Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8998 ID=rna8998|Name=rna8998|organism=Nannochloropsis gaditana|type=mRNA|length=1332bp
CTCTCATCCCGCTTGGGCAACATGATTAAATTACCCCTTCTAACCTAAAA
TGTGCCGCCTTTAATGACACTGCACAGGCAATAGTCTATCTGAAGCCAAA
TTCACTTGCATACCGAGTTTTTAGTAAAGGGACAGCACCAGCATCTGCAT
GTTTCCAGTACCCCGTAGAAGAGGCGTGAGTGCCTTCCCCGTCCTATCCT
TCTCCCTCCTTCTTGTCGTCTTCCAGAGTGGCCATGTAGCCCAGGCCTTC
TTTACGCAGCCATTATTCTCTTCGTCGAAGAACTCTTTCTGGACCGGGGC
CAGGAAAGAGTCCCTGCACGCCAGCTCCTCGGACGTAACCACCACCAGCT
CCTCTTCCTCCTCCTCCTCCGTCAATGTCGCCGCCTCCAGCCCCACGCCC
CCCTCCACACCCGCGCTTAACCCCTACGTGAGCGCAAGCCGGACGTCCGG
CTCTGGACTCTCGCACCCGCTGGACCCCATCGGACGCATCGACGCTAGCC
CCCAGGCTCTCTTGGACTGGGTGAAAGCGGGCCGTGGGGAGCTCCACGAA
GGTGTGGCTTTCACCCATGCCCCGTCCTCGGACGCACAGGTGGACGGCGA
GGGCGGGACGGAGGCAGGGACGGAGGAGCTGGCCGGGTGGACGCTGCAGA
CTCAGGTTCCAGTGCAGGCGGGCACCGTGCTGGTCTCCATCCCCAACGTG
TTGACACTCTCACCTACCCGGAGAAAGTTCAAGCTGCCCACGGGAGCGGC
CGCGATGCAGGTGGGAGGGAACGAGGGAGAGACGGAGGGGAGGAGGGAGG
TAGGGGAGGCGCGTGGGGTCTTTTCTGGACGGCGCCTGAGATGCCTGTCT
TGGTGTGGTGCTCATGCTCCCTCCCTCCCTCCGTCCCTCCCTCCCTCCCT
TCCTTCCTCTCTTCCCCTCCCTCCTTCCCACCCTCTCGCTTCCCTCCTTC
CATCCTTCTTCCTTCCTTCCTTCCCCCTCATTAGCTCAAGGACATACTGA
ACCGAAAGGCGCCAGCCGACGCCGCCAGCGAAGCCATCGCGGCCCTGGTC
AGTGACGAGGGCGTCGCCAAGCTTCTAGAAGATTCCATCATCGACGAGCG
CATCCAGCGGGTGATGGACTCCTTTCCAGAGACGTACTGGCGCATCAAGC
TCGCGGTCCTGTTGGTGGCTGAGAGGATGAAAGGACCACAATCCTTCTGG
TGGCCCTACTTGAGAAATTTGCCCGAGAAATATGCGCACATGCCGATCTT
CTACAACAATAGCGAGTTCGGTTCCATTCAAATCCCTTCTCTTATGCGGA
CAGTGCAGGTGCGTCTTTCCTCCCTCCTTCCC
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protein sequence of rna8998

>rna8998-protein ID=rna8998-protein|Name=rna8998|organism=Nannochloropsis gaditana|type=polypeptide|length=110bp
METVTTDDSVVKEYNPYREAELMERREIVISYMGGNMNRSMREILKFRIA
QKKILYQVISDICHTMYGLGLGKFPVSPLCPRVHFCCGFCLFPLPWECLF
LRFLPVLPQL
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mRNA from alignment at KK037251.1:53795..54988+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8998 ID=rna8998|Name=rna8998|organism=Nannochloropsis gaditana|type=mRNA|length=1194bp|location=Sequence derived from alignment at KK037251.1:53795..54988+ (Nannochloropsis gaditana)
tccctccctccctcaggtcctTTTCCGGCCCCTCCCGGAGTCGGACGAGT
CCCGAGACGAGCTGATGGAGACCGTGACCACCGACGACAGTGTCGTGAAG
GAGTACAACCCCTACAGAGAAGCAGAGCTGATGGGTGAGGCCagactttc
ctcccttcctccctccctctccccctccttccatcccctgcAGTGCATCG
CCGAAGCCTGTCGAACGCTCGCCGAGTATTGAGTCATTCCCTTTACTCac
cacccgtcctccctcccgccctccttctctccctcagaACGTCGGGAGAT
CGTGATATCTTACATGGGCGGGAACATGAATCGAAGCATGCGAGAGATCC
TCAAGTTCCGGATCGCGCagaagaaggtggggaggaagggggagggagaa
agggagggaaggagggtgggagggtgggagggagggagggagggagggag
tggtgggcCGCAAGCCAGGCAAAGGAGAggatagagagggaggcaacaAG
ACGGAAACACTCAGCCGCGCGTTTTCGGCACGTCACAGATATTGTATCAA
GTCATATCCGATATTTGCCACACCATGTACGGTCTTGGCCTCGGTAAGTT
CCCTGtttcccctctttgtcctcgcGTGCATTTCTGTTGTGGtttctgcc
tcttccctcttccttgggAGTGTCTCTTTTTACGCTTTCTCCCTGTTTTG
CCTCAGCTATGATCCCCGCGACCGACTGAAAACCGCTTTCTGTCTATCTC
CCTTGgttcatccccccctcctccagttCAATCTGTGAACGACATGGAGG
AGctagaggaggagcgtcagATCGCGCAGACGCCGGAGGAGAGTTCGAGA
CCACTCACGtcctcgggcgggggggcccGATCTTTGGATTCGATCCTCGC
CTGGGCGAGCAAGACGTTTGGAGAAGATGCAGGGCTgtaagagaggggag
agggagggagtagggAGGCGGGTTATAAATATGCGATCCGGAAGGAGGTG
CGTGTGCAAGCATTGGACACAGCCGCGTTTGTCGTTTCCAGAACGATGTG
ACAGGGCACCGGCACAGAGGggtgagagagaagaggagaacgaATAGGAT
AGAGGGACGCGAGTAAGAAGGAGCGAGGTGCCGTAACGATAGGAACTGAG
CAAGTTGAAAAGAAATGACCCTCAGGTTTGAGGGGGTAAGGCCT
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Coding sequence (CDS) from alignment at KK037251.1:53795..54988+

>rna8998 ID=rna8998|Name=rna8998|organism=Nannochloropsis gaditana|type=CDS|length=999bp|location=Sequence derived from alignment at KK037251.1:53795..54988+ (Nannochloropsis gaditana)
ATGGAGACCGTGACCACCGACGACAGTGTCGTGAAGGAGTACAACCCCTA
CAGAGAAGCAGAGCTGATGGaACGTCGGGAGATCGTGATATCTTACATGG
GCGGGAACATGAATCGAAGCATGCGAGAGATCCTCAAGTTCCGGATCGCG
CagaagaagATATTGTATCAAGTCATATCCGATATTTGCCACACCATGTA
CGGTCTTGGCCTCGGTAAGTTCCCTGtttcccctctttgtcctcgcGTGC
ATTTCTGTTGTGGtttctgcctcttccctcttccttgggAGTGTCTCTTT
TTACGCTTTCTCCCTGTTTTGCCTCAGCTATGAATGGAGACCGTGACCAC
CGACGACAGTGTCGTGAAGGAGTACAACCCCTACAGAGAAGCAGAGCTGA
TGGaACGTCGGGAGATCGTGATATCTTACATGGGCGGGAACATGAATCGA
AGCATGCGAGAGATCCTCAAGTTCCGGATCGCGCagaagaagATATTGTA
TCAAGTCATATCCGATATTTGCCACACCATGTACGGTCTTGGCCTCGGTA
AGTTCCCTGtttcccctctttgtcctcgcGTGCATTTCTGTTGTGGtttc
tgcctcttccctcttccttgggAGTGTCTCTTTTTACGCTTTCTCCCTGT
TTTGCCTCAGCTATGAATGGAGACCGTGACCACCGACGACAGTGTCGTGA
AGGAGTACAACCCCTACAGAGAAGCAGAGCTGATGGaACGTCGGGAGATC
GTGATATCTTACATGGGCGGGAACATGAATCGAAGCATGCGAGAGATCCT
CAAGTTCCGGATCGCGCagaagaagATATTGTATCAAGTCATATCCGATA
TTTGCCACACCATGTACGGTCTTGGCCTCGGTAAGTTCCCTGtttcccct
ctttgtcctcgcGTGCATTTCTGTTGTGGtttctgcctcttccctcttcc
ttgggAGTGTCTCTTTTTACGCTTTCTCCCTGTTTTGCCTCAGCTATGA
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Synonyms
Publications