EWM21738.1, cds8939 (CDS) Nannochloropsis gaditana

Overview
NameEWM21738.1
Unique Namecds8939
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037250.1:602581..602789 +
Alignment locationKK037250.1:603066..603809 +
Alignment locationKK037250.1:603895..603934 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM21738.1
Productgtpase obg
Orig transcript idgnl|cribi|Naga_100270g9.5533.mrna
GenePObg1
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:602581..602789 +
KK037250.1supercontigKK037250.1:603066..603809 +
KK037250.1supercontigKK037250.1:603895..603934 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR006169GTP1_OBG_dom
Homology
BLAST of EWM21738.1 vs. NCBI_GenBank
Match: gi|585102067|gb|EWM21738.1| (gtpase obg [Nannochloropsis gaditana])

HSP 1 Score: 662.144 bits (1707), Expect = 0.000e+0
Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 0
Query:    1 MCSTSQPTRRKKRWGGGSTSTSKGPLLLLVLLTGLCGQSIDAFLQVPSHRGSLSRRPASECVAAVTLPRSEIILKAGKRGGGGGKYDSPKRKQAHLQQKGLGRNDLPPASSPSSSPPADPPGVLWEGEEEGDDEDEEEMDAEILEFQGLMERGAFQLLDPDDVEIDEAYDAFDAEDEDEDEDEGEEGAEGGAERGESRPRNDPEWQFFDTAKVFVKGGDGGDGCVAFRREKYVDMGGPNGGSGGGGGSIYFRCDEGLNTLSGLRQKVHWKAGGGARGQGKSRTGATAPDVVVDVPPGTIVRTQDGTLAGQLVEHGERVGNRARSDGCRWN 330
            MCSTSQPTRRKKRWGGGSTSTSKGPLLLLVLLTGLCGQSIDAFLQVPSHRGSLSRRPASECVAAVTLPRSEIILKAGKRGGGGGKYDSPKRKQAHLQQKGLGRNDLPPASSPSSSPPADPPGVLWEGEEEGDDEDEEEMDAEILEFQGLMERGAFQLLDPDDVEIDEAYDAFDAEDEDEDEDEGEEGAEGGAERGESRPRNDPEWQFFDTAKVFVKGGDGGDGCVAFRREKYVDMGGPNGGSGGGGGSIYFRCDEGLNTLSGLRQKVHWKAGGGARGQGKSRTGATAPDVVVDVPPGTIVRTQDGTLAGQLVEHGERVGNRARSDGCRWN
Sbjct:    1 MCSTSQPTRRKKRWGGGSTSTSKGPLLLLVLLTGLCGQSIDAFLQVPSHRGSLSRRPASECVAAVTLPRSEIILKAGKRGGGGGKYDSPKRKQAHLQQKGLGRNDLPPASSPSSSPPADPPGVLWEGEEEGDDEDEEEMDAEILEFQGLMERGAFQLLDPDDVEIDEAYDAFDAEDEDEDEDEGEEGAEGGAERGESRPRNDPEWQFFDTAKVFVKGGDGGDGCVAFRREKYVDMGGPNGGSGGGGGSIYFRCDEGLNTLSGLRQKVHWKAGGGARGQGKSRTGATAPDVVVDVPPGTIVRTQDGTLAGQLVEHGERVGNRARSDGCRWN 330          
BLAST of EWM21738.1 vs. NCBI_GenBank
Match: gi|553190281|ref|XP_005855160.1| (cathepsin l-like proteinase, partial [Nannochloropsis gaditana CCMP526] >gi|422293901|gb|EKU21201.1| cathepsin l-like proteinase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 288.5 bits (737), Expect = 8.593e-87
Identity = 142/144 (98.61%), Postives = 143/144 (99.31%), Query Frame = 0
Query:   69 RSEIILKAGKRGGGGGKYDSPKRKQAHLQQKGLGRNDLPPASSPSSSPPADPPGVLWEGEEEGDDEDEEEMDAEILEFQGLMERGAFQLLDPDDVEIDEAYDAFDAEDEDEDEDEGEEGAEGGAERGESRPRNDPEWQFFDTAK 212
            + EIILKAGKRGGGGGKYDSPKRKQAHLQQKGLGRNDLPPASSPSSSPPADPPGVLWEGEEEGDDEDEEEMDAEILEFQGLMERGAFQLLDPDDVEIDEAYDAFDAEDEDEDEDEGEEGAEGGAERGESRPRNDPEWQFFDTAK
Sbjct:  101 KFEIILKAGKRGGGGGKYDSPKRKQAHLQQKGLGRNDLPPASSPSSSPPADPPGVLWEGEEEGDDEDEEEMDAEILEFQGLMERGAFQLLDPDDVEIDEAYDAFDAEDEDEDEDEGEEGAEGGAERGESRPRNDPEWQFFDTAK 244          
BLAST of EWM21738.1 vs. NCBI_GenBank
Match: gi|298710555|emb|CBJ25619.1| (PObg1, plastid Obg/CgtA-like GTPase 1 [Ectocarpus siliculosus])

HSP 1 Score: 131.724 bits (330), Expect = 1.180e-30
Identity = 75/121 (61.98%), Postives = 91/121 (75.21%), Query Frame = 0
Query:  198 RPRNDPEWQFFDTAKVFVKGGDGGDGCVAFRREKYVDMGGPNGGSGGGGGSIYFRCDEGLNTLSGLRQKVHWKAGGGARGQGKSRTGATAPDVVVDVPPGTIVRTQDGTLAGQLVEHGERV 318
            R RND EWQFFDTA++ VK G GG+GC+A RREK + MGGPNGGSGG GGSI+ RC EGLNTL+ +R KVH++A  G  GQGKSRTG +  DV V  P GT+VR Q+G L G+L EH + +
Sbjct:  107 RARNDQEWQFFDTARINVKAGKGGNGCIATRREKGISMGGPNGGSGGRGGSIFLRCSEGLNTLAMVRHKVHYRATDGQNGQGKSRTGNSGADVYVSAPLGTVVRDQEGVLCGELTEHDQEL 227          
BLAST of EWM21738.1 vs. NCBI_GenBank
Match: gi|873236539|emb|CEL99198.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 130.568 bits (327), Expect = 4.588e-30
Identity = 76/147 (51.70%), Postives = 101/147 (68.71%), Query Frame = 0
Query:  172 FDAEDEDEDEDEGEEGAEGGAERGESRPRNDPEWQFFDTAKVFVKGGDGGDGCVAFRREKYVDMGGPNGGSGGGGGSIYFRCDEGLNTLSGLRQKVHWKAGGGARGQGKSRTGATAPDVVVDVPPGTIVRTQDGTLAGQLVEHGERV 318
            F+ +D DE   EG   +   + RG    +NDPEWQFFDTAK+ VK GDGG+GC +FRREKYV +GGP+GG+GG GGS+    D  +NTL   R++VHWKA  G  G  K++ G +  D+VV VPPGT+VR ++G LAG+L   G+R+
Sbjct:  187 FNQQDRDE---EGTLQSHPDSRRGL---KNDPEWQFFDTAKINVKAGDGGNGCCSFRREKYVPLGGPDGGTGGRGGSVVLEADPNINTLYRFRRQVHWKAQSGGHGGSKNKMGESGSDLVVIVPPGTVVRDEEGRLAGELRRQGDRL 327          
BLAST of EWM21738.1 vs. NCBI_GenBank
Match: gi|1210516004|dbj|GAX25089.1| (GTPase [Fistulifera solaris])

HSP 1 Score: 121.324 bits (303), Expect = 5.932e-27
Identity = 71/123 (57.72%), Postives = 87/123 (70.73%), Query Frame = 0
Query:  197 SRPRNDPEWQFFDTAKVFVKGGDGGDGCVAFRREKYVDMGGPNGGSGGGGGSIYFRCDEGLNTLSGLRQKVHWKAGGGARGQGKSRTGATAPDVVVDVPPGTIVR-TQDGTLAGQLVEHGERV 318
            S   +DPEW+FFDTA++ V GGDGG+G VAFRREK   +GGP+GG GG GGS+Y  CDE LNTL  LRQK+H +A  G  G GK++ G  A D +V VPPGT+VR      LAG+L  HGER+
Sbjct:   55 SSNNDDPEWKFFDTARLHVSGGDGGNGSVAFRREKGAPLGGPSGGRGGSGGSVYLECDESLNTLMMLRQKIHVRAANGKNGIGKNKDGQCADDTIVRVPPGTVVRELTTQKLAGELRTHGERL 177          
BLAST of EWM21738.1 vs. NCBI_GenBank
Match: gi|219114306|ref|XP_002176324.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217402727|gb|EEC42716.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 117.472 bits (293), Expect = 1.091e-25
Identity = 75/152 (49.34%), Postives = 99/152 (65.13%), Query Frame = 0
Query:  168 AYDAFDAEDEDEDEDEGEEGAEGGAERGESRPRNDPEWQFFDTAKVFVKGGDGGDGCVAFRREKYVDMGGPNGGSGGGGGSIYFRCDEGLNTLSGLRQKVHWKAGGGARGQGKSRTGATAPDVVVDVPPGTIVR-TQDGTLAGQLVEHGERV 318
            A + FDA+ E E +       +      +   ++DPEW+FFDTA++ V+ GDGG GCVAFRREK    GGPNGG GG GGS+Y   D GLNTL  LRQKVH KA  G  GQGK+R G +A ++ + VPPGT+VR  +   +AG+L E G+++
Sbjct:    2 ATEVFDADKEQETKKNQSRRIQSL----QKTEKDDPEWKFFDTARIHVQAGDGGTGCVAFRREKGEARGGPNGGRGGRGGSLYLIADPGLNTLMPLRQKVHVKARQGRNGQGKNRDGTSADNIYIRVPPGTVVRDLKTQKVAGELREAGQKL 149          
BLAST of EWM21738.1 vs. NCBI_GenBank
Match: gi|516755746|ref|WP_018085757.1| (GTPase ObgE [Desulfurispora thermophila])

HSP 1 Score: 110.923 bits (276), Expect = 9.153e-24
Identity = 65/114 (57.02%), Postives = 81/114 (71.05%), Query Frame = 0
Query:  206 QFFDTAKVFVKGGDGGDGCVAFRREKYVDMGGPNGGSGGGGGSIYFRCDEGLNTLSGLRQKVHWKAGGGARGQGKSRTGATAPDVVVDVPPGTIVR-TQDGTLAGQLVEHGERV 318
             F+D AK++VKGGDGG+GCVAFRREKYV  GGP GG GG GGS+  + DEGL TL   R + H+KAG G  G GK+  G  A D+V+ VP GT+VR  + G + G LVEHG+R+
Sbjct:    1 MFYDYAKIYVKGGDGGNGCVAFRREKYVPDGGPWGGDGGRGGSVILQADEGLRTLVDFRYQRHYKAGRGQHGMGKNMHGRGAEDLVLRVPVGTVVRDAESGAVLGDLVEHGQRL 114          
BLAST of EWM21738.1 vs. NCBI_GenBank
Match: gi|1054905972|ref|WP_066666756.1| (GTPase ObgE [Desulfotomaculum copahuensis] >gi|1034289358|gb|OAT85617.1| GTPase ObgE [Desulfotomaculum copahuensis])

HSP 1 Score: 109.768 bits (273), Expect = 2.188e-23
Identity = 66/114 (57.89%), Postives = 79/114 (69.30%), Query Frame = 0
Query:  206 QFFDTAKVFVKGGDGGDGCVAFRREKYVDMGGPNGGSGGGGGSIYFRCDEGLNTLSGLRQKVHWKAGGGARGQGKSRTGATAPDVVVDVPPGTIVR-TQDGTLAGQLVEHGERV 318
             F+D AKVFVKGGDGG+GCVAFRREKYV  GGP+GG GG GG + FR D GL TL   R + H+KAG G  G GK+  G +  D+VV VPPGT+VR T +G L   L   G++V
Sbjct:    1 MFYDQAKVFVKGGDGGNGCVAFRREKYVPEGGPSGGDGGAGGDVVFRVDPGLRTLVDFRYQRHFKAGRGQHGMGKNMHGKSGADLVVRVPPGTVVRDTSNGALIADLTREGQQV 114          
BLAST of EWM21738.1 vs. NCBI_GenBank
Match: gi|955293614|ref|WP_058094543.1| (GTPase CgtA [Alicyclobacillus tengchongensis] >gi|954103604|gb|KRW91996.1| GTPase ObgE [Alicyclobacillus tengchongensis])

HSP 1 Score: 108.612 bits (270), Expect = 5.610e-23
Identity = 63/114 (55.26%), Postives = 81/114 (71.05%), Query Frame = 0
Query:  206 QFFDTAKVFVKGGDGGDGCVAFRREKYVDMGGPNGGSGGGGGSIYFRCDEGLNTLSGLRQKVHWKAGGGARGQGKSRTGATAPDVVVDVPPGTIVRTQD-GTLAGQLVEHGERV 318
             FFD AK++VKGGDGG+G V++RREKYV +GGP GG GG GG + F  DEGL TL   R + H+KA  G +G  K++ GA APD+V+ VPPGT+VR  D G   G L +HG+R+
Sbjct:    1 MFFDHAKIYVKGGDGGNGIVSYRREKYVPLGGPAGGDGGRGGDVVFIVDEGLRTLIDFRYQRHFKAKPGEQGGTKNKHGADAPDMVIKVPPGTVVRDADSGQFLGDLTQHGDRL 114          
BLAST of EWM21738.1 vs. NCBI_GenBank
Match: gi|493491995|ref|WP_006446680.1| (GTPase ObgE [Alicyclobacillus hesperidum] >gi|403121672|gb|EJY55949.1| GTP-binding protein Obg/CgtA [Alicyclobacillus hesperidum URH17-3-68] >gi|1088780449|emb|SDW39671.1| GTP-binding protein [Alicyclobacillus hesperidum])

HSP 1 Score: 108.612 bits (270), Expect = 5.894e-23
Identity = 63/114 (55.26%), Postives = 81/114 (71.05%), Query Frame = 0
Query:  206 QFFDTAKVFVKGGDGGDGCVAFRREKYVDMGGPNGGSGGGGGSIYFRCDEGLNTLSGLRQKVHWKAGGGARGQGKSRTGATAPDVVVDVPPGTIVRTQD-GTLAGQLVEHGERV 318
             FFD AK++VKGGDGG+G V++RREKYV +GGP GG GG GG + F  DEGL TL   R + H+KA  G +G  K++ GA APD+V+ VPPGT+VR  D G   G L +HG+R+
Sbjct:    1 MFFDHAKIYVKGGDGGNGIVSYRREKYVPLGGPAGGDGGRGGDVVFVVDEGLRTLIDFRYQRHFKAKPGEQGGTKNKHGADAPDMVIKVPPGTVVRDADSGQFLGDLTQHGDRL 114          
The following BLAST results are available for this feature:
BLAST of EWM21738.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585102067|gb|EWM21738.1|0.000e+0100.00gtpase obg [Nannochloropsis gaditana][more]
gi|553190281|ref|XP_005855160.1|8.593e-8798.61cathepsin l-like proteinase, partial [Nannochlorop... [more]
gi|298710555|emb|CBJ25619.1|1.180e-3061.98PObg1, plastid Obg/CgtA-like GTPase 1 [Ectocarpus ... [more]
gi|873236539|emb|CEL99198.1|4.588e-3051.70unnamed protein product [Vitrella brassicaformis C... [more]
gi|1210516004|dbj|GAX25089.1|5.932e-2757.72GTPase [Fistulifera solaris][more]
gi|219114306|ref|XP_002176324.1|1.091e-2549.34predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|516755746|ref|WP_018085757.1|9.153e-2457.02GTPase ObgE [Desulfurispora thermophila][more]
gi|1054905972|ref|WP_066666756.1|2.188e-2357.89GTPase ObgE [Desulfotomaculum copahuensis] >gi|103... [more]
gi|955293614|ref|WP_058094543.1|5.610e-2355.26GTPase CgtA [Alicyclobacillus tengchongensis] >gi|... [more]
gi|493491995|ref|WP_006446680.1|5.894e-2355.26GTPase ObgE [Alicyclobacillus hesperidum] >gi|4031... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna8969rna8969Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications