rna8965, rna8965 (mRNA) Nannochloropsis gaditana

Overview
Namerna8965
Unique Namerna8965
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1482
Alignment locationKK037250.1:592667..594754 -

Link to JBrowse

Properties
Property NameValue
Productubiquitin-like modifier-activating enzyme 5
Orig transcript idgnl|cribi|Naga_100270g6.5530.mrna
Orig protein idgnl|cribi|Naga_100270g6.5530
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:592667..594754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100270g6gene8691Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21735.1cds8935Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8965rna8965-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8965 ID=rna8965|Name=rna8965|organism=Nannochloropsis gaditana|type=mRNA|length=1482bp
ATGATTGCATATATCAGCCACAAAGCCTGCTCGAGACACACAGCATCATG
CATTCCAGCAAAGAGCCCTCAAGTGGTGTCCTTTTCTAGTCTGACACTCT
ATAAGGCATCGGCGGAGGCCGCGTGTGAGAAGACAGCACACCCAATTGTC
ACACTGACCTACCCTCGTCTCCTAACCCCAACAAAACGTCGCATCTCCTA
TTTCTACGACTCCGACATTGGGAATTTCCATTATGGGCAAGGGCATCCCA
TGAAGCCCCACCGCGTCCGGATGACGCACTCCCTCGTCGTGTACTACTGG
TTGTATCGAAACATGGAAATCCTTCGCCCCAAGCCCGTGCTGCTCAGTGA
AATGACCCGATTCCATTCGGATGATTACATCAATTTTCTCCGAGTGATTA
CACCCGACAACATGCAAGAGTACATGAGGCAGCTGCAGAGGTTTAATGTC
GGGGAGGATTGCCCCGTTTTCGACGGACTCTTTGAATTCTGTCAGCTGTA
CACGAGCGGATCCATCGGAGGGGCGGCTTTGTTGAACCAGAAAGAGGCCG
ATATCGTCATCAATTGGTCGGGAGGGCTGCATCATGCCAAGAAATCGGAG
GCCTCGGGCTTCTGCTACGTAAACGATTGCGTCCTGGCGATTTTGGAGCT
CCTGAAGCACCACCACCGGGTGCTCTACATCGACATCGACATCCACCACG
GGGACGGGGTGGAGGAGGCCTTCTACACCACCGACCGGGTGATGACGGTC
TCCTTCCACAAGTTTGGTGAGTACTTTCCGGGCACGGGCGACGTGAGCGA
TTTCGGGCACGGAAACGGGAAAAACTACGCGATCAACTTCCCCTTGCACG
ACGGGATGGACGACGAAAGTTTTGTCTCGGTGTTTCGACCTGTGATTGGG
AAGGTGATGGAGACCTTCGCGCCAGGAGCCATCGTCCTTCAATGCGGCGC
AGACTCCTTGTCGGGCGATCGCCTCGGCTGCTTTAACTTGTCCTTGAAGG
GGCACGCGGACGCGGTTGCCTTCGTGAAAAGCTTCGACGTGCCTGTCTTG
GCCCTGGGCGGGGGGGGGTACACGCTGCGGAACGTGCCTCGATGTTGGGT
CTATGAAACCTCCGTCCTCCAGGGGACAGAGATCAAGGACGACTTGCCTT
TCCACGATTACTTTGAGTACTACGGCCCCGACTACAAACTCCACCTCCCC
GTCTCCAACATGGAGAATCTTAACACCAAGCCATACCTGGAAACGATCAA
ACAGCAGCTGTTCACCATCCTCTCCCAGGTGAGCCCCACGGGCGCGCAGA
TCCAGACGGGCCAGCCAGGGACGAGCATGACGCCTCCGGACGCAGCCTTG
CCGGAGACGGCGCGGGAAAGGGAAAGTGAAATGGAAGAGAGGGATCCGGA
TACGCGGGTGGGTGATGGGGGGGGAGGGAGGAAAGAGCATCCCTTGGAGA
TGATGCCGGGGGGGGACGGGACGCGGAGGTAG
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protein sequence of rna8965

>rna8965-protein ID=rna8965-protein|Name=rna8965|organism=Nannochloropsis gaditana|type=polypeptide|length=500bp
MVPCSTLTTRKATKHLQIPHHEPVFTRALPFIAMSWPSGRLPNRKLQDIP
PVECGSRDNKDLIGGKDFKVFDAWAKRSKNVFNTSRRHRVISMDPCASSS
DVIAALQAEITSLRTALHSVTAASSPPPPCTTTSSPVFRPGRIKIDHMSA
EVTDSNPYSRLMALKRMGVVKEYERIREVSVLIVGLGGVGSVAAEMLTRC
GIGKLLLFDYDVVELANMNRLFFRPEHAGLRKTEAATATLESINPDVCLE
GHTYDVTSVPHFEHFLDRLRRGGPDGRSPVHLVLSCVDNYAARTAINQAC
NEADVAWMESGVSEDAVSGHIQTLFPGRTACFECLPPLLVASGVEESTLR
REGVCAASLPTTMGIVAGLLVQNALKYLLDFGDLSYYLGYSALTDHFPRH
TLWPNPDCGNMWCRRRQETWRGKGRAWQRRETDCREMGEGAGPVHGTNEW
GIEVIGREGVDVEGEVGVERGSAGSVQQSGREGTEASLEELAAELSQLQS
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mRNA from alignment at KK037250.1:592667..594754-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8965 ID=rna8965|Name=rna8965|organism=Nannochloropsis gaditana|type=mRNA|length=2088bp|location=Sequence derived from alignment at KK037250.1:592667..594754- (Nannochloropsis gaditana)
ACACAAGGAGGGAAGCTGAGTAACTGGGCTTCAGAAGCGCGTGCGATGGA
TTCCGAGGCATAGATGGGAAGGAGTGCAAGAAAGGTACGGGCATGCAATG
AGGGACGCTTGATCCACTTTCCCCGTCTATGCACAGTCCACTCGAACCAA
ACAGGTCACCATGGACACAAGGAACAATCTAACGCAAATATTAGTTAGGA
AGGCGCACGATGTGCTGATGTCGCAAGCCCAGCGATGAAGCGAGGGAAGA
CACCGATGATCCTAGAAGCTTCTACTGTGATGGCACGTAGTTTGGAAATG
GCATGGTCCCATGCAGCACTTTGACGACTAGAAAGGCAACTAAGCATCTC
CAAATCCCTCACCATGAGCCTGTTTTCACGCGAGCCTTGCCTTTTATTGC
CATGTCCTGGCCATCAGGTCGACTGCCAAATCGCAAACTTCAAGACATAC
CACCCGTTGAATGTGGAAGCAGGGACAACAAGGATTTAATTGGTGGAAAG
GACTTCAAAGTATTTGACGCGTGGGCTAAACGCTCCAAAAACGTATTCAA
TACCAGCAGAAGGCATCGTGTCATCAGCATGGACCCGTGTGCTTCCTCTT
CCGATGTAATTGCGGCGCTTCAAGCTGAAATAACCTCCCTCCGGACAGCC
CTCCACAGTGTTACTGCTGCCTCTTCGCCTCCTCCTCCATGTACAACCAC
GTCTTCCCCCGTGTTTAGGCCTGGCCGCATCAAAATCGACCACATGTCTG
CAGAGGTCACAGACAGCAATCCGTACAGCCGTCTAATGGCGCTCAAACGC
ATGGGCGTTGTGAAGGAGTATGAACGCATCCGAGAGGTATCCGTCCTCAT
TGTTGGTCTGGGCGGCGTAGGGTCTGTGGCGGCCGAAATGTTGACTCGAT
GCGGAATTGGGAAGCTTCTGCTCTTTGACTATGATGTCGTGGAGCTGGCC
AACATGAACCGTCTCTTTTTTCGACCCGAACATGCAGGCCTACGCAAGAC
GGAGGCCGCCACGGCCACTTTGGAAAGCATCAATCCGGACGTGTGCCTGG
AGGGGCACACCTACGACGTCACAAGCGTGCCGCACTTTGAGCATTTCTTG
GACCGCCTCCGCCGTGGCGGTCCAGATGGAAGGTCACCCGTCCATTTGGT
CCTAAGCTGCGTCGACAATTACGCTGCCCGCACTGCCATTAACCAGGCTT
GCAACGAAGCGGACGTGGCGTGGATGGAGTCGGGCGTGAGCGAAGACGCG
GTCTCTGGGCATATCCAGACGCTTTTCCCCGGTCGAACCGCGTGTTTTGA
GTGCCTTCCCCCACTCCTGGTGGCCTCGGGCGTGGAGGAAAGCACCTTGC
GACGGGAAGGGGTCTGTGCCGCTTCCTTACCCACCACCATGGGCATCGTC
GCAGGATTATTGGTGCAAAACGCCCTCAAATACCTTTTGGATTTCGGCGA
CCTGTCGTACTATCTGGGGTACAGCGCGTTGACCGATCATTTCCCTCGGC
ACACCCTGTGGCCGAACCCGGATTGTGGCAATATGTGGTGCCGGCGACGG
CAAGAAACCTGGCGAGGGAAGGGTAGGGCTTGGCAGAGAAGGGAAACGGA
CTGCCGGGAGATGGGGGAGGGCGCGGGGCCGGTGCACGGGACGAATGAAT
GGGGCATTGAGGTGATTGGGAGGGAAGGGGTTGATGTGGAGGGGGAGGTA
GGAGTGGAGAGGGGCAGCGCAGGGTCCGTACAACAAAGCGGGAGGGAAGG
AACGGAAGCCTCCTTGGAAGAATTGGCAGCAGAGCTCTCTCAGCTTCAAT
CCTAAGGAAATGGCAACGGCCAGTGCGGAGGACGCTGGAGCCCTGGCAAA
ATGTGACGCAAAGCGCACCAAAGAAAGTACCCCGTAAATCCAGGTATGTA
TGGCGCCGTGGACTGACGTACCGACCATCACGCCTTATCGTGCAAAGCAA
CGGTGGATAGGATCAGCGCCCCGCTCTCCCCGGGGGGAAATCCACGCGCA
CTGCGCTAGGCCTGATGCATTGCTTTAGGCCCCTTTGCGTCTCCTTACAT
GCCTCCTTTTCGCGGCACCTGCTGACACCGGATCTCTT
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Coding sequence (CDS) from alignment at KK037250.1:592667..594754-

>rna8965 ID=rna8965|Name=rna8965|organism=Nannochloropsis gaditana|type=CDS|length=1503bp|location=Sequence derived from alignment at KK037250.1:592667..594754- (Nannochloropsis gaditana)
ATGGTCCCATGCAGCACTTTGACGACTAGAAAGGCAACTAAGCATCTCCA
AATCCCTCACCATGAGCCTGTTTTCACGCGAGCCTTGCCTTTTATTGCCA
TGTCCTGGCCATCAGGTCGACTGCCAAATCGCAAACTTCAAGACATACCA
CCCGTTGAATGTGGAAGCAGGGACAACAAGGATTTAATTGGTGGAAAGGA
CTTCAAAGTATTTGACGCGTGGGCTAAACGCTCCAAAAACGTATTCAATA
CCAGCAGAAGGCATCGTGTCATCAGCATGGACCCGTGTGCTTCCTCTTCC
GATGTAATTGCGGCGCTTCAAGCTGAAATAACCTCCCTCCGGACAGCCCT
CCACAGTGTTACTGCTGCCTCTTCGCCTCCTCCTCCATGTACAACCACGT
CTTCCCCCGTGTTTAGGCCTGGCCGCATCAAAATCGACCACATGTCTGCA
GAGGTCACAGACAGCAATCCGTACAGCCGTCTAATGGCGCTCAAACGCAT
GGGCGTTGTGAAGGAGTATGAACGCATCCGAGAGGTATCCGTCCTCATTG
TTGGTCTGGGCGGCGTAGGGTCTGTGGCGGCCGAAATGTTGACTCGATGC
GGAATTGGGAAGCTTCTGCTCTTTGACTATGATGTCGTGGAGCTGGCCAA
CATGAACCGTCTCTTTTTTCGACCCGAACATGCAGGCCTACGCAAGACGG
AGGCCGCCACGGCCACTTTGGAAAGCATCAATCCGGACGTGTGCCTGGAG
GGGCACACCTACGACGTCACAAGCGTGCCGCACTTTGAGCATTTCTTGGA
CCGCCTCCGCCGTGGCGGTCCAGATGGAAGGTCACCCGTCCATTTGGTCC
TAAGCTGCGTCGACAATTACGCTGCCCGCACTGCCATTAACCAGGCTTGC
AACGAAGCGGACGTGGCGTGGATGGAGTCGGGCGTGAGCGAAGACGCGGT
CTCTGGGCATATCCAGACGCTTTTCCCCGGTCGAACCGCGTGTTTTGAGT
GCCTTCCCCCACTCCTGGTGGCCTCGGGCGTGGAGGAAAGCACCTTGCGA
CGGGAAGGGGTCTGTGCCGCTTCCTTACCCACCACCATGGGCATCGTCGC
AGGATTATTGGTGCAAAACGCCCTCAAATACCTTTTGGATTTCGGCGACC
TGTCGTACTATCTGGGGTACAGCGCGTTGACCGATCATTTCCCTCGGCAC
ACCCTGTGGCCGAACCCGGATTGTGGCAATATGTGGTGCCGGCGACGGCA
AGAAACCTGGCGAGGGAAGGGTAGGGCTTGGCAGAGAAGGGAAACGGACT
GCCGGGAGATGGGGGAGGGCGCGGGGCCGGTGCACGGGACGAATGAATGG
GGCATTGAGGTGATTGGGAGGGAAGGGGTTGATGTGGAGGGGGAGGTAGG
AGTGGAGAGGGGCAGCGCAGGGTCCGTACAACAAAGCGGGAGGGAAGGAA
CGGAAGCCTCCTTGGAAGAATTGGCAGCAGAGCTCTCTCAGCTTCAATCC
TAA
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Synonyms
Publications