rna8944, rna8944 (mRNA) Nannochloropsis gaditana

Overview
Namerna8944
Unique Namerna8944
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1639
Alignment locationKK037250.1:535871..537608 -

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Properties
Property NameValue
Productperoxisome biogenesis
Orig transcript idgnl|cribi|Naga_100815g1.2467.mrna
Orig protein idgnl|cribi|Naga_100815g1.2467
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:535871..537608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100815g1gene8670Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21759.1cds8914Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8944rna8944-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8944 ID=rna8944|Name=rna8944|organism=Nannochloropsis gaditana|type=mRNA|length=1639bp
CCAGATGATTCATTCATGTTAAGTGCACACTATTGTTTGAGGGTTTGGGC
TCCCTGTTGCTGCGACAGAACCTGGTAATCATGGCGATGGCCCTAATAAG
CTGTACCTCGCTGTCGCCTCGCTTACTTCTTCATACCGCGTTACTGAAAA
ACATGTCCCCAAACTTTGTCAATCCTGACATGAAGCTGACAGCCACAAAC
GCGGTGAACGAGCATGCAATGATCATGTTGTGAAAATGGAGGGATTAAGC
CCAAACGGGGCAATTTGACAGTGACATAGATTCAGGCTAGCGTGACGGAC
TCGACCAACATCGGAAGGAAAAGAGGGGCTTAACGCAGTCATATCTTAAG
CCTTTTGCTCCATTGTATCAAGGCCCGGTACCAGCATGAGCAGCGGTGGC
GCGCAGGGCCAGACGCCCATGCAGCGGCTCACGATAATGAAGGACAACGT
GCTTAAAAAGGTGGAGCGCCAGATGGAACAGTACCCCTCGCTCACGATGC
GTTCCTCGCTGTTGGACATGGAGAAGAAAGTGAATGTGCCAGCCCCTGCA
CTGTTCATCCTTGGCAGCTCATCTCTGGTCCTTCTTTTGGTCCTTCTTGT
TAGCATGGAGGGCGTCGCGCTCCTGGTCGGCTTGGCCTACCCACTCCTCG
GCGCCCTCAAGGCCATCAAGGTGCAGGAGGCGCACGTCATCAAGTTCTTC
ATCCAATACTTCCTCCTCTTCAACGCCCTGAATCTGTTGGAGACCTTCCT
GCCTCTCAGCCGTCTCCCTTTGTACTACTTGGGGAAGCTCCTCTTTCTGG
CATGGGCGTTCAACCCCAAGACCCAGGGCGCCCGGCTCGTCTACGGCACC
CTCCGCCCCCTCCTCCTTCCCCACCTCGGCATCGCTTTGGGTGCATCCGG
GGCCGAGCAGTCGAGGCCTGGGGGAGGAGGCAGGAAGCGAGGGGGGGGGA
GGGAAAACACGGGGGAGGGGAGGTTCGGGGCCCGGGACGGGAGCGGGGAA
GGTGCGAGCATCCACCTTCGCATCGAACTCGCAGCCCGGGGCTTGGAAAA
GCCGGCGGAACCCGAGCGGCTGGACACTCTGTGCCAACTCCGCATCCTGC
CCATGACAGGTGGGCACAGCGAGGTCCGGAGAGCGGCCCTGGACGAAGGC
CAGTGGTACAAGAGTCGGATCAACACCGCGCCTCCCCAAGACGCCCCCGA
CTGGCGACACGACCCGCAGTTCCTCCGCGTCCCGACCACGGAGGATAACG
TCTTGGAGGTGTTGATTGTGAATAAGATGAGTTGGAGGGACCATCCCTTG
GGCCGGGTGCGCCTGCCTCTGAGGGGGCTCTCTTTTCCCATCGAGACCAC
ATTGCCCCTTGAGGACCCGTTTGGAGACGAGAGGGAGGAGGGAGGGGAGG
AGAATGAGCGGGGGGAGGTTCAGGGGGAGCTGGAGATTCATCTTGCGCGA
GTGGAAGAATAAGGGAGGGAGGAGGGCGGAAGGGAGGAGGGAGAGTTTGG
GAACGGTCTTCTGGCGAGAGGGATGGGGATTTTGAGAGGGAAGAGGTGGG
ATGAAAGGCACGACTGCAGTGATCGAGCGTCATAGAAGGCAAAGAGGGAA
GAAATAGGTGCTTTGTTTTGGGCTGGGGGTCCCATTTCT
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protein sequence of rna8944

>rna8944-protein ID=rna8944-protein|Name=rna8944|organism=Nannochloropsis gaditana|type=polypeptide|length=552bp
MRVAAGGARRLWQAGPGAQGGREGATEVGEEPGAGQTMSPVAGEGKGENH
IEAGTWSKPPSEAWVILGAAAVSSAVALVATVRDPSLLHASLRRPGGVEG
LVEIPPLDAKAREAILAALLAQHSSNHSFPSSPSLGPSAPPSPARPAPDR
PLSVVPGVDVAELAARLEGCTSLDLEVLVTRILHAAVGRSLRELGDSASA
STVDPRPAVLPADVTDALEGFSAASHRNARLSSSGTSWADVGGLEEIKNE
VREILEMPVKFAPLYARLPTRLPTGLLLHGPPGCGKTLLAGAVARECGLN
FISIKGPEVLDKFIGASEQAVRALFARATAAAPCLLFFDEFEALAPRRGS
DNTGVTDRVVNQLLTFLDGVEGRTGVYVMGATSRPDLVDSALLRPGRLDR
QLYLGFPDAGESLGILKALVRKMSLTPQATAALEKVALADGADLMTGADW
QAMVSTAQLEAVHEKLAAMGTTKTGNGAGGEKESSQGGDGGEGVVVTAQH
LWAAFAATRPSIPPGERAKLQAIYDKFRKSRDGDYKVASATDDGKHLRTA
LK
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mRNA from alignment at KK037250.1:535871..537608-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8944 ID=rna8944|Name=rna8944|organism=Nannochloropsis gaditana|type=mRNA|length=1738bp|location=Sequence derived from alignment at KK037250.1:535871..537608- (Nannochloropsis gaditana)
ATGAGGGTGGCGGCGGGGGGGGCAAGGAGGCTGTGGCAGGCGGGACCCGG
CGCCCAGGGAGGGAGGGAAGGAGCGACGGAGGTAGGGGAGGAGCCGGGCG
CGGGGCAAACAATGTCACCTGTCGCAGGGGAAGGGAAGGGGGAAAATCAC
ATCGAGGCTGGCACGTGGTCCAAGCCGCCATCCGAGGCCTGGGTCATCTT
GGGAGCTGCCGCCGTGAGTAGTGCGGTCGCCCTGGTCGCCACCGTCCGGG
ACCCCAGCCTCCTCCACGCTTCCCTTCGTCGGCCCGGCGGGGTGGAGGGT
TTAGTGGAAATCCCCCCCCTGGACGCCAAGGCCCGCGAGGCAATCTTGGC
CGCGCTCCTCGCCCAGCACTCCAGCAACCATTCTTTTCCCTCCTCACCCT
CCCTTGGGCCCTCCGCCCCGCCCTCCCCTGCCCGGCCTGCGCCCGACCGG
CCCCTGTCCGTTGTCCCCGGCGTCGACGTGGCCGAGCTGGCCGCCCGGTT
GGAGGGATGCACATCCCTCGACCTGGAAGTCCTGGTTACCCGGATCCTCC
ACGCGGCCGTCGGGCGCTCGTTGCGCGAGCTTGGTGACTCGGCCTCCGCC
TCGACCGTCGATCCCCGCCCGGCCGTCCTCCCTGCCGACGTCACTGACGC
CTTGGAAGGCTTTAGCGCTGCCTCCCATCGGAACGCCCGCCTCTCTTCCT
CCGGCACGAGCTGGGCCGACGTGGGTGGTCTGGAAGAGATCAAAAACGAA
GTGCGCGAGATTTTGGAGATGCCCGTAAAGTTCGCCCCTCTGTACGCCCG
CCTTCCCACCCGCCTGCCCACAGGTCTGTTGCTGCACGGGCCACCGGGGT
GCGGTAAAACCCTGCTGGCAGGGGCGGTGGCGCGGGAGTGTGGGCTGAAT
TTCATCTCGATCAAGGGGCCTGAGGTCTTGGACAAGTTCATCGGAGCCAG
CGAACAGGCGGTTCGGGCCCTCTTTGCCAGGGCCACGGCCGCCGCGCCTT
GCCTCCTGTTTTTCGACGAATTCGAAGCCCTGGCGCCGCGGCGTGGGAGC
GACAACACGGGCGTCACGGACCGGGTGGTGAACCAGTTGCTCACTTTCTT
GGACGGGGTGGAGGGCCGGACGGGTGTCTACGTGATGGGGGCGACTTCCC
GACCCGACCTGGTGGACTCGGCGCTCTTGCGTCCGGGTCGTTTGGACCGG
CAACTCTACCTGGGGTTTCCTGACGCGGGGGAAAGCTTGGGTATTTTGAA
GGCTTTGGTGCGGAAGATGAGCTTGACGCCCCAGGCTACGGCCGCATTGG
AAAAGGTGGCCTTGGCGGACGGGGCGGACCTGATGACGGGGGCGGACTGG
CAGGCCATGGTCAGCACGGCGCAATTGGAGGCGGTGCATGAGAAATTAGC
GGCTATGGGGACGACTAAGACGGGCAATGGAGCGGGTGGAGAGAAGGAGA
GCAGTCAGGGCGGGGATGGAGGGGAAGGGGTGGTGGTGACCGCACAACAT
CTGTGGGCAGCTTTTGCAGCCACCCGCCCGTCGATACCACCGGGGGAAAG
GGCAAAGCTTCAGGCCATTTACGACAAGTTTCGGAAGTCTCGTGATGGGG
ATTACAAAGTTGCGAGCGCCACAGACGACGGGAAACACTTGCGGACAGCC
TTAAAATGAGAGCCTTTCCATGTTAAATACCCAACCATGTAATTAGGGAC
GAGACGCCGTCAAAGGAAAAAATGCGCGTCGTCCCACC
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Coding sequence (CDS) from alignment at KK037250.1:535871..537608-

>rna8944 ID=rna8944|Name=rna8944|organism=Nannochloropsis gaditana|type=CDS|length=1659bp|location=Sequence derived from alignment at KK037250.1:535871..537608- (Nannochloropsis gaditana)
ATGAGGGTGGCGGCGGGGGGGGCAAGGAGGCTGTGGCAGGCGGGACCCGG
CGCCCAGGGAGGGAGGGAAGGAGCGACGGAGGTAGGGGAGGAGCCGGGCG
CGGGGCAAACAATGTCACCTGTCGCAGGGGAAGGGAAGGGGGAAAATCAC
ATCGAGGCTGGCACGTGGTCCAAGCCGCCATCCGAGGCCTGGGTCATCTT
GGGAGCTGCCGCCGTGAGTAGTGCGGTCGCCCTGGTCGCCACCGTCCGGG
ACCCCAGCCTCCTCCACGCTTCCCTTCGTCGGCCCGGCGGGGTGGAGGGT
TTAGTGGAAATCCCCCCCCTGGACGCCAAGGCCCGCGAGGCAATCTTGGC
CGCGCTCCTCGCCCAGCACTCCAGCAACCATTCTTTTCCCTCCTCACCCT
CCCTTGGGCCCTCCGCCCCGCCCTCCCCTGCCCGGCCTGCGCCCGACCGG
CCCCTGTCCGTTGTCCCCGGCGTCGACGTGGCCGAGCTGGCCGCCCGGTT
GGAGGGATGCACATCCCTCGACCTGGAAGTCCTGGTTACCCGGATCCTCC
ACGCGGCCGTCGGGCGCTCGTTGCGCGAGCTTGGTGACTCGGCCTCCGCC
TCGACCGTCGATCCCCGCCCGGCCGTCCTCCCTGCCGACGTCACTGACGC
CTTGGAAGGCTTTAGCGCTGCCTCCCATCGGAACGCCCGCCTCTCTTCCT
CCGGCACGAGCTGGGCCGACGTGGGTGGTCTGGAAGAGATCAAAAACGAA
GTGCGCGAGATTTTGGAGATGCCCGTAAAGTTCGCCCCTCTGTACGCCCG
CCTTCCCACCCGCCTGCCCACAGGTCTGTTGCTGCACGGGCCACCGGGGT
GCGGTAAAACCCTGCTGGCAGGGGCGGTGGCGCGGGAGTGTGGGCTGAAT
TTCATCTCGATCAAGGGGCCTGAGGTCTTGGACAAGTTCATCGGAGCCAG
CGAACAGGCGGTTCGGGCCCTCTTTGCCAGGGCCACGGCCGCCGCGCCTT
GCCTCCTGTTTTTCGACGAATTCGAAGCCCTGGCGCCGCGGCGTGGGAGC
GACAACACGGGCGTCACGGACCGGGTGGTGAACCAGTTGCTCACTTTCTT
GGACGGGGTGGAGGGCCGGACGGGTGTCTACGTGATGGGGGCGACTTCCC
GACCCGACCTGGTGGACTCGGCGCTCTTGCGTCCGGGTCGTTTGGACCGG
CAACTCTACCTGGGGTTTCCTGACGCGGGGGAAAGCTTGGGTATTTTGAA
GGCTTTGGTGCGGAAGATGAGCTTGACGCCCCAGGCTACGGCCGCATTGG
AAAAGGTGGCCTTGGCGGACGGGGCGGACCTGATGACGGGGGCGGACTGG
CAGGCCATGGTCAGCACGGCGCAATTGGAGGCGGTGCATGAGAAATTAGC
GGCTATGGGGACGACTAAGACGGGCAATGGAGCGGGTGGAGAGAAGGAGA
GCAGTCAGGGCGGGGATGGAGGGGAAGGGGTGGTGGTGACCGCACAACAT
CTGTGGGCAGCTTTTGCAGCCACCCGCCCGTCGATACCACCGGGGGAAAG
GGCAAAGCTTCAGGCCATTTACGACAAGTTTCGGAAGTCTCGTGATGGGG
ATTACAAAGTTGCGAGCGCCACAGACGACGGGAAACACTTGCGGACAGCC
TTAAAATGA
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Synonyms
Publications