rna8907, rna8907 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8907
Unique Name	rna8907
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2081
Alignment location	KK037250.1:450039..452348 +

Link to JBrowse

Properties


Property Name	Value
Product	h -translocating pyrophosphatase family
Orig transcript id	gnl\|cribi\|Naga_100065g14.7397.mrna
Orig protein id	gnl\|cribi\|Naga_100065g14.7397
Gene	inorganic
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:450039..452348 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
inorganic	gene8636	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8907	rna8907-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21806.1	cds8877	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:450039..452348+
coding sequence from alignment at KK037250.1:450039..452348+

mRNA sequence

>rna8907 ID=rna8907|Name=rna8907|organism=Nannochloropsis gaditana|type=mRNA|length=2081bp
TATCTGTGTCTCATATCATGTTATGTAAGACCGACACCCTCAGCTTTGCC
TCATTTGGGGAACGTATTTATCAGTATGCTTCACTGTTCCATTCTCTGGG
TTCTTTTTTTCTCCCTCGAAAGTTTTGGTGCCATTTCCCGAGAGGGGCGC
AGAGGACATGGCCTTGAATGCTGAACGGTTGCTGCGGCCACTATTTCCGT
CCCAAAATCACGATGATCGGATTTTAGACAACGACTATGGCACAAATGAG
GGTGTATCCGATGTAAAGGTCGTATTTACGGATTACCAAGGCTGGTGGGC
ACCTTTGACGCATTTGTTTTATAGCAATGCCTCCCAATGCCTCGTCAGCG
CGCACCCTGAAAGCAGTATAGAAGAAGTCGAGTCATTTTACTGCTCACAT
TGCCTGAACTACTTTGCTGACGCAGAAGCGGCAAGTTCTTACCATCGTTG
TCCTCGTTGCTTCGATTGTCCGCAGTGCACAAGTGCGCTTCTCATCATAT
CAGTCGACGAGGAAAGCAATCACGAAGAGAATGATGCAGGTTACACGTTT
CGGTGTGGATACTGTCGTTGGTCCTCCGCTGACTCAATTGGACTGATCGA
AAGCACTCCCGAGGCTTTGATAGAACGGTTAAAAAAGACAGAATTGGATG
ATCCCCAGGCAGTGCGGTATCGCGCCTTGTTGCAGCATCTTCGCCAACGG
GCCGTGGCGATAGCGCGGGCACGCCGACACCACGATCGACAGTACTTGCT
CTCTGCGCCCTTCGCACTGCCTACAGAAAACGAGCTGGACAGTCTCGGTG
TAGGCCCCGTTCGGGCGCGGGCGCGTTGGCATTTGTCGGACTTGGAGGAG
AAGGAAGATCGCGGGCAAGCGGCCAGGACCCGCGCTACGGACGGCAAAGA
GACTGCCTATCTATCTACGTTACTCACAGAGGAAAAGATGGGAACGAAGA
CTGCAGCCGACGCCTGCTCTTTCTCCGCCGAAGACGTGGACCGTGCCCCA
GCATCCTGGGTCACCCTGAGGACACTTTCCCCCCGTGGTCCGTCATCGCA
AACGGCCAGTCGCTCTCTATATCCCCCTTTGACAAGCCACTCACGACCTC
GGCGACGCCCCCTGTGCACCAAGCGGGTGCGTCGGTGTCGCCAAGACGTG
GAAGCGGGGAGACCAGGCATCCTCCTCAAGCCCAAGGTGAACCCATTGGA
GGGTGATTCATCCTGGACGGGCACGGCAGGAAAGTGGTGGCAGAAAGACT
CGAGCGCCATCCATGTGCTTCCTTCCGTGAGCGTCATCCGCGCCCAAGGA
CTAGAGAAGGTGTTTGCAGGGAGGGCGAGAGCCACAGGGGTCACAGGAGG
CGGTGGACAGGAAAGTGATGCTGACGCAAGACAATGGGCGAAGAGTCATT
TTGCTGGCACCGGAGACGATCCTGAGGCCCTCTCTTTTGTCTTGCGCCTG
CGCAACCCTCTACGGGGCGCGGTACAGGTCGTTCTCGTCCCACCTCCGGC
GACCTCCGAGGGCGCTGGTGCCACTACGGAGCTCTATTACCTGCGGCGCC
TGCCAGTGGCGCTTGGAGGCGATGTGAATAGCAGTAGAAATGTGGGCAAT
GTATTGTATGCCCGTGTATCTTGCGCGGGTGCTGAGCAGGCGGTCGCGGG
CGAGGCGGTGGACCTGGAGGCTTTCGAAGACGATCTTCTGGAGGAGGAAG
AAGAGGGTGAGGACCAAGAGTCGTTGGACGCCCTCGCCTTGCGTCTACTG
GATGGCGACACGAAGATGAAGCGGGAGGAGGGCGCACAGGAGGTCTCAGC
CACACGAGTGCTCTTACGACGCAAGTCCCGTGCCTGGCTTCACGTGAAAG
TCCCGGTCCCAACGGCTCCCCTTGTCCTGAACAAGGACGCTGCGGTGGGG
GTTCTACTATTCTTACGATTCTTAAGTCATCGAAGTGAGTTAAGCAACAA
TCGTAAAGAGCCCGCATTTATAACTGTGCCCGTGTGCTTGGCGTTTACTC
GGGATAGTAAAAGTAGTGATTCTTGCCATGACGTGGACCGGTGTACGAAG
CATTGAAGCATAAGATAAATATTGTTCCTCC

protein sequence of rna8907

>rna8907-protein ID=rna8907-protein|Name=rna8907|organism=Nannochloropsis gaditana|type=polypeptide|length=769bp
MVTTSQDLWLSIFVVAFSVIGLAFAAIQFKLIADIQIISSTDGASNGEAG
RAGGDSEVTKRLKDISGAISTGADAFLHAEYLICVWFSIIFACIIFAFVS
WGSTRVPGNSTTDGLIQGALTTVAFLLGAFTSMLSGWIGMKVAVFANVRT
TIAAQKPGWTECFNTAFRAGGVMGFALTSLAILILYIALQLYKIQYPSSS
EWFMVMEAISGYGLGGSSIAMFGRVGGGIYTKAADVGADLVGKVVHGIPE
DDPRNPAVIADNVGDNVGDVAGMGADLFGSFAESTCAALVIASQADEVVD
GIVKADYLYNYSWSAVLFPLVISATGLIICLLSSFVATHLLPVRKEKDVE
NALKIQLIVTTLAVIPVVFGLAHWFLPGTFSLSGVGSTVPQGTPDKAAGA
IVAGALGGLIIGLITEFYTSHSFKPVREVANACKTGAATNIIYGLALGYK
SCIIPVFILAIVIFIGFYTLNMYGVALAAIGMLVTLATGLTIDAYGPVCD
NAGGIAEMALQDYPEVREKTDALDAAGNTTAAIGKGFAIGSAALVSLALY
GAFAVRIGIRNGVNILSPVTFAFLLIGSNLPYWFSALTMKSVGTAAMQMV
MEVERQFREQPQLLNEGTTLRPDYTRCVDISTKAALKEMVPPAALVMLSP
LIAGTFFGKYAVAGVLTGGLVSGVQLAVSMSNTGGAWDNAKKYIEKQSPE
HELQGKGSDIHKAAVVGDTVGDPLKDTSGPSLNILMKLMAIISLVFAPYF
LAINDGNGVFHQITESSVL

mRNA from alignment at KK037250.1:450039..452348+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8907 ID=rna8907|Name=rna8907|organism=Nannochloropsis gaditana|type=mRNA|length=2310bp|location=Sequence derived from alignment at KK037250.1:450039..452348+ (Nannochloropsis gaditana)
ATGGTCACAACATCGCAAGACTTGTGGCTCTCCATTTTTGTTGTGGCTTT
CTCTGTCATCGGCTTGGCGTTTGCGGCAATTCAATTTAAATTGATCGCCG
ACATCCAAATCATCTCTTCCACGGACGGCGCCAGTAATGGGGAAGCTGGC
CGCGCCGGAGGGGATAGTGAGGTAACTAAACGTCTGAAAGACATTTCTGG
TGCGATATCTACGGGTGCCGACGCATTTTTGCACGCTGAGTACCTGATTT
GCGTTTGGTTTTCGATCATCTTTGCCTGCATCATCTTCGCCTTTGTGTCG
TGGGGCTCCACTCGCGTTCCCGGGAACTCGACGACCGACGGGCTCATCCA
AGGGGCTTTGACTACCGtggctttccttcttggtGCCTTCACCTCCATGC
TCTCTGGCTGGATTGGAATGAAAGTCGCCGTCTTCGCCAACGTCCGAACC
ACCATCGCCGCCCAGAAGCCTGGGTGGACGGAGTGCTTCAACACCGCCTt
ccgggcgggaggcgtAATGGGATTTGCCTTGACCTCATTGGCGATTCTCA
TCCTCTACATTGCCTTGCAACTTTACAAGATCCAGTACCCGAGCTCCAGC
GAGTGGTTCATGGTGATGGAGGCTATCTCCGGGTATGGTTTGGGCGGGTC
CTCTATCGCCATGTTCGGCCGCGTGGGCGGAGGTATCTATACCAAGGCGG
CCGACGTGGGCGCAGATCTGGTAGGGAAAGTGGTGCACGGTATTCCGGAA
GACGATCCTCGCAATCCGGCCGTGATAGCCGACAACGTGGGTGACAACGT
AGGGGACGTGGCAGGGATGGGGGCGGATCTGTTCGGCTCTTTTGCCGAGT
CGACCTGCGCCGCGTTGGTGATTGCCTCCCAGGCCGACGAGGTCGTGGAC
GGAATCGTCAAGGCCGATTATTTGTACAACTACAGCTGGAGCGCggttct
tttccccttggtCATCTCGGCGACGGGGCTCATCATctgccttctctcct
cctttgtcgccacgcaccttctccccgtccgcaaggagaaggacgtggag
aatgCCTTGAAAATCCAGCTCATTGTCACGACCCTGGCCGTCATCCCCGT
CGTCTTCGGACTGGCCCACTGGTTCCTGCCGGGCACGTTCTCCCTCTCGG
GCGTGGGCAGCACGGTACCCCAAGGCACGCCCGACAAGGCCGCCGGCGCC
ATTGTGGCGGGCGCCTTGGGAGGTCTGATTATCGGGCTGATCACTGAGTT
CTATACATCCCATTCCTTTAAACCGGTCCGGGAGGTGGCGAACGCCTGCA
AGACCGGGGCCGCCACCAACATCATTTACGGCCTGGCGCTGGGCTATAAG
TCCTGCATCATCCCCGTCTTCATTCTGGCGATCGTCATCTTCATCGGTTT
TTACACCTTGAACATGTACGGCGTCGCGCTGGCCGCCATTGGGATGCTCG
TCACCCTGGCCACGGGCCTGACCATCGACGCCTACGGCCCGGTCTGCGAC
AACGCGGGTGGGATCGCCGAGATGGCCCTGCAAGACTACCCGGAGGTTCG
TGAGAAAACCGACGCCCTGGACGCGGCTGGCAATACCACGGCGGCTATTG
GCAAAGGTTTTGCGATTGGATCGGCGGCATTGgtctccctggccctgtAC
GGAGCCTTCGCAGTCCGCATTGGGATTCGAAACGGGGTGAACATTTTGTC
CCCTGTGaccttcgccttcctgctGATCGGCTCCAACCTGCCCTACTGGT
TTTCTGCCTTGACGATGAAATCCGTGGGCACGGCCGCCATGCAGATGGTG
ATGGAAGTCGAGCGTCAGTTCCGAGAACAACCTCAGCTCCTGAATGAGGG
CACTACATTGCGTCCCGATTACACACGCTGCGTGGACAtctccaccaagg
ccgcccTCAAGGAGATGGTCCCACCCGCCGCGCTGGTGATGCTGTCCCCG
TTGATCGCCGGCACGTTCTTTGGGAAGTACGCGGTGGCGGGCGTCTTGAC
CGGCGGCCTGGTCTCGGGGGTGCAGCTGGCTGTCTCCATGTCCAACACCG
GAGGGGCCTGGGACAACGCCAAGAAATACATCGAGAAGCAGAGCCCGGAA
CACGAGCTCCAGGGCAAGGGTTCGGACATCCACAAGGCGGCCGTGGTCGG
TGACACGGTGGGCGACCCCCTCAAGGACACGTCTGGGCCGTCTTTGAACA
TCCTCATGAAGCTGATGGCGATCATTTCCTTGGTCTTCGCACCCTATTTC
TTGGCCATCAACGACGGAAACGGGGTCTTCCACCAGATCACGGAGAGCTC
AGTGCTCTGA

Coding sequence (CDS) from alignment at KK037250.1:450039..452348+

>rna8907 ID=rna8907|Name=rna8907|organism=Nannochloropsis gaditana|type=CDS|length=2310bp|location=Sequence derived from alignment at KK037250.1:450039..452348+ (Nannochloropsis gaditana)
ATGGTCACAACATCGCAAGACTTGTGGCTCTCCATTTTTGTTGTGGCTTT
CTCTGTCATCGGCTTGGCGTTTGCGGCAATTCAATTTAAATTGATCGCCG
ACATCCAAATCATCTCTTCCACGGACGGCGCCAGTAATGGGGAAGCTGGC
CGCGCCGGAGGGGATAGTGAGGTAACTAAACGTCTGAAAGACATTTCTGG
TGCGATATCTACGGGTGCCGACGCATTTTTGCACGCTGAGTACCTGATTT
GCGTTTGGTTTTCGATCATCTTTGCCTGCATCATCTTCGCCTTTGTGTCG
TGGGGCTCCACTCGCGTTCCCGGGAACTCGACGACCGACGGGCTCATCCA
AGGGGCTTTGACTACCGtggctttccttcttggtGCCTTCACCTCCATGC
TCTCTGGCTGGATTGGAATGAAAGTCGCCGTCTTCGCCAACGTCCGAACC
ACCATCGCCGCCCAGAAGCCTGGGTGGACGGAGTGCTTCAACACCGCCTt
ccgggcgggaggcgtAATGGGATTTGCCTTGACCTCATTGGCGATTCTCA
TCCTCTACATTGCCTTGCAACTTTACAAGATCCAGTACCCGAGCTCCAGC
GAGTGGTTCATGGTGATGGAGGCTATCTCCGGGTATGGTTTGGGCGGGTC
CTCTATCGCCATGTTCGGCCGCGTGGGCGGAGGTATCTATACCAAGGCGG
CCGACGTGGGCGCAGATCTGGTAGGGAAAGTGGTGCACGGTATTCCGGAA
GACGATCCTCGCAATCCGGCCGTGATAGCCGACAACGTGGGTGACAACGT
AGGGGACGTGGCAGGGATGGGGGCGGATCTGTTCGGCTCTTTTGCCGAGT
CGACCTGCGCCGCGTTGGTGATTGCCTCCCAGGCCGACGAGGTCGTGGAC
GGAATCGTCAAGGCCGATTATTTGTACAACTACAGCTGGAGCGCggttct
tttccccttggtCATCTCGGCGACGGGGCTCATCATctgccttctctcct
cctttgtcgccacgcaccttctccccgtccgcaaggagaaggacgtggag
aatgCCTTGAAAATCCAGCTCATTGTCACGACCCTGGCCGTCATCCCCGT
CGTCTTCGGACTGGCCCACTGGTTCCTGCCGGGCACGTTCTCCCTCTCGG
GCGTGGGCAGCACGGTACCCCAAGGCACGCCCGACAAGGCCGCCGGCGCC
ATTGTGGCGGGCGCCTTGGGAGGTCTGATTATCGGGCTGATCACTGAGTT
CTATACATCCCATTCCTTTAAACCGGTCCGGGAGGTGGCGAACGCCTGCA
AGACCGGGGCCGCCACCAACATCATTTACGGCCTGGCGCTGGGCTATAAG
TCCTGCATCATCCCCGTCTTCATTCTGGCGATCGTCATCTTCATCGGTTT
TTACACCTTGAACATGTACGGCGTCGCGCTGGCCGCCATTGGGATGCTCG
TCACCCTGGCCACGGGCCTGACCATCGACGCCTACGGCCCGGTCTGCGAC
AACGCGGGTGGGATCGCCGAGATGGCCCTGCAAGACTACCCGGAGGTTCG
TGAGAAAACCGACGCCCTGGACGCGGCTGGCAATACCACGGCGGCTATTG
GCAAAGGTTTTGCGATTGGATCGGCGGCATTGgtctccctggccctgtAC
GGAGCCTTCGCAGTCCGCATTGGGATTCGAAACGGGGTGAACATTTTGTC
CCCTGTGaccttcgccttcctgctGATCGGCTCCAACCTGCCCTACTGGT
TTTCTGCCTTGACGATGAAATCCGTGGGCACGGCCGCCATGCAGATGGTG
ATGGAAGTCGAGCGTCAGTTCCGAGAACAACCTCAGCTCCTGAATGAGGG
CACTACATTGCGTCCCGATTACACACGCTGCGTGGACAtctccaccaagg
ccgcccTCAAGGAGATGGTCCCACCCGCCGCGCTGGTGATGCTGTCCCCG
TTGATCGCCGGCACGTTCTTTGGGAAGTACGCGGTGGCGGGCGTCTTGAC
CGGCGGCCTGGTCTCGGGGGTGCAGCTGGCTGTCTCCATGTCCAACACCG
GAGGGGCCTGGGACAACGCCAAGAAATACATCGAGAAGCAGAGCCCGGAA
CACGAGCTCCAGGGCAAGGGTTCGGACATCCACAAGGCGGCCGTGGTCGG
TGACACGGTGGGCGACCCCCTCAAGGACACGTCTGGGCCGTCTTTGAACA
TCCTCATGAAGCTGATGGCGATCATTTCCTTGGTCTTCGCACCCTATTTC
TTGGCCATCAACGACGGAAACGGGGTCTTCCACCAGATCACGGAGAGCTC
AGTGCTCTGA

Synonyms

Publications