rna8903, rna8903 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8903
Unique Name	rna8903
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1810
Alignment location	KK037250.1:436164..438457 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100065g18.7388.mrna
Orig protein id	gnl\|cribi\|Naga_100065g18.7388
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:436164..438457 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100065g18	gene8632	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21797.1	cds8873	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8903	rna8903-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:436164..438457-
coding sequence from alignment at KK037250.1:436164..438457-

mRNA sequence

>rna8903 ID=rna8903|Name=rna8903|organism=Nannochloropsis gaditana|type=mRNA|length=1810bp
ACCCTCAATGCGCAGGCTTGGAAGAACGGAGTGTAAAAGGAGGAGGTTAA
CTTCTTTGGTGTGCGACCACGATGCAATGACGCCGGTCATGAATCGCGAG
GCGTTGGCACTAATCTTTGTGATTCCTGGCCGGTGATCAGTGAATTACCA
TTTGCCAAGGAACGCTGCACTTGTTCACTTGTGAAAAGATGCTCGTGTCC
TGACATCATCGATGAAGATGCCCGCCAGAAACATAGGTCCAGCGAACAAG
GCAATAATCACAGAGGAGTTGACTTATACTTTCCGTTCGAAATTATGAGA
GCAACCTACTGCTGGTTCTTATCCGTGATGTGATGCAGCAACAAGTTGAC
CACACGTGCAACTGTTTTCATTGAACAGGACATTTGTTGAAATACTGCTG
AGCCTCGCGGCAGTCGTTATTGTGATGCCTTGATCCGACGTACGTAAGCT
CTTTTTGATTACACCTTTCAATCCCATTTCTCTTTGCATCTCGTAAGTAG
AATGAGGAATATATCTCTATGTTTGGCTATTCTTTTAGTAGCTGGATGCG
CGGTCGCCACTTTGCCGCACGCGTCACCTGGTCAAAGCCCCGACCGAATT
CCTCTCCTTGGCGTTTGCGGGGGACGTTGGGGTCGTACAGCTCCTACGCC
CCCGCCAGCGCCCGAGGTTGTCGAGACACCTTCACCCGCCCAACCACTTT
CTTTAGCATCGCCGTACGCCAACTTGCGAGCTTTGGCAATATTAAGCGCT
GCTGCAGGGTCCTGGGCTGTGCTGCGAGCTCCCAACGTGCGGGAGTGGTT
CGATGACGTCCGCCCCCTGCAACCTAAATACTTTCCCCTGGCCCGGCACC
AAGTCCTCATTCTTCTAGCCTGGCTGACCAACAAAATCGCCGTGCGGATT
CCGGGAAGGTCCGACGGGAAAAGCTGGAAAGATGCCATGTCCTCCCCCGT
GCGCTTTTTTACCCCCTCTGCCTACGCCTTTGCAATATGGGCCCCCATCT
TCCTCGGCGAATTCCTCCTCACTTTCTACCAACTCGCCTCGAATCGTCTC
GCCCCGGCCCTTCAACCCTACCTCGCGCGTTTGGCTCCTCCCCTGGCGCA
GGCCCTTGCGGCACAGAGCTTGTGGTGCGTGGCCTTTCGGCCCTGGGTGG
GGAGGATGCAATTTGTGCCTTCCGCGCTGTTGGCAATGACAGCGGTGGGT
CTGTCGCGGGTGCACACGGTCCTGCGGGAGGCCGTGGCCGCGGGGGCCAT
GCGACCTTGGGACTACCTGATTGTCCACTTGCCCCTCTCCCTCCATTTCG
GATGGATCACCTGTGCCACGCTCGTCAACTTGAACGGCTGGTTTGCCGTC
GCCCCTACTTTGCGCACAGGAGACAAACTGGGCTTGGCGCTGGCTTCCAT
CAACGTGGCTGTCACGCTTGGGAGTCAGGTCACCCTTGCCTCGGGCGACC
CTGTGATTGCTCTGGTCGTGGCGTGGGCCTTGTACGCGGTGGCTCACGAC
CTGGCGCCATCCCGATCGCTGCTCAGGAAGAACAAGCTTGTGGACGATGA
CGCTCTGGATTGCCTGGAAATCTCTGCCCGTGTCTCCGCCTTCTTACAAG
CGGGCCTGGCGGGTGCTGTGATGGTTTGGAAGGTGCTGCTGAAAGCAGGG
GTGGTAGTTCCTGGCGACGCGAAGCGATTGATGGCTGTAGCGATGGGGCC
TGTGAAGACTTTATTGGGATGAGCGGACGTGTGGAGTAAATTTAAGGAGG
GATAACTGCGGAGAGAGGAAAGAATTGATCGGACGCATAGGATTGTAGGT
GCAGTCCAGG

protein sequence of rna8903

>rna8903-protein ID=rna8903-protein|Name=rna8903|organism=Nannochloropsis gaditana|type=polypeptide|length=428bp
MDGGLRRQRRQCPLSARGLSQHYEQYIESQLPKMCIKFASAHDSLAPRSF
QEHQERVSDQLDFRPSAYDDGQQQQLLVITMATAQAKPDDLALNDMACPK
FDGESSSCTTEAAGSSTNASSCVVHELKRQSTAGRPHGSVQDVAEGTTGD
SLMFLESPLSMVSFDEGDLGSECHSLLCGEEAFSLGTPDNSITCALEGFA
RESPKSCRSFNYDAKGNITTFRGSKGCKTNKSIKSSCVTSGMCTITGGLR
SPYERAKATTCQNKHAPSSTPLAHEYGGKPAIACSRARPISPGQPMGKNK
SFRAFTTCFNVSHTDAKQESSTKAQRRKRKCSLDSVVFDIVPIPKVLPGS
LLEKRRNRSCRTPHCTNRYRTPGYLCEACGGGRCQARGCERLHQGKQGLS
NLFFCRAHRNIYARLQKEGKGGEEKKLK

mRNA from alignment at KK037250.1:436164..438457-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8903 ID=rna8903|Name=rna8903|organism=Nannochloropsis gaditana|type=mRNA|length=2294bp|location=Sequence derived from alignment at KK037250.1:436164..438457- (Nannochloropsis gaditana)
CGGACCCAGCGAACCTCCGAGATAGACGGACATGTTCTGTCATGATGTCT
TTTAGCAAAGTGTGCTGAGTTTTGATGGATCGATGCTTAGCACATGCATA
TAAAAGTTTTTTAGGGATTTGGAATGGCTGTAGGCAAGACTGGTCGCATT
CTTTAGTCCCAAAGACTTGATTGCATATGCACTTGTTGATACGGGAAGTG
TATGGGCAACAACCCAGCAAGCCGAAAGGAGCTTTTCAAACATTCGACAT
AAACACCTACACGAGTTATTAATACATAGCGTGCTATAAATCGAAGTCTG
ATAGTTTTCTTTAGCTTTGAAAGAGATCTATCGGGCGTACCCGAGTTTGT
TGCAAAAGTGGTTTCAATACTCCCATACACCTCTTACAACGTGACAGGAT
GGACGGCGGTTTGCGTAGGCAAAGGAGGCAATGTCCCCTGTCTGCCAGAG
GCTTATCTCAGCATTACGAGCAATACATCGAAAGTCAACTGCCAAAAATG
TGCATTAAGTTTGCCAGCGCCCATGATTCTCTCGCTCCTAGATCGTTTCA
GGAACATCAGGAGCGGGTGTCCGACCAGCTCGACTTCCGCCCAAGTGCTT
ACGACGACGGGCAGCAACAGCAGCTGCTGGTAATCACTATGGCTACTGCG
CAGGCCAAACCCGATGACCTCGCCCTCAACGACATGGCTTGTCCCAAATT
TGATGGCGAAAGCAGCAGTTGCACCACCGAAGCGGCGGGCTCATCCACGA
ACGCAAGTTCCTGTGTTGTGCATGAACTCAAACGACAATCCACCGCTGGC
CGCCCGCATGGCAGTGTACAAGATGTAGCCGAAGGCACGACGGGGGACAG
CCTGATGTTTCTGGAATCTCCACTTTCCATGGTCTCATTCGATGAGGGTG
ATCTGGGTTCAGAGTGTCACAGCCTTCTTTGCGGGGAGGAGGCTTTCAGT
CTGGGCACTCCCGACAACTCGATTACCTGTGCCCTAGAAGGGTTCGCCCG
CGAGAGCCCGAAAAGCTGCCGTAGTTTCAATTATGATGCGAAGGGCAACA
TCACCACCTTCCGTGGCAGCAAGGGCTGCAAAACGAACAAAAGCATAAAG
AGCAGCTGCGTCACTTCCGGTATGTGTACGATTACAGGAGGTTTGCGAAG
CCCCTATGAAAGGGCCAAGGCGACAACTTGTCAGAATAAGCATGCTCCCT
CTAGTACTCCCCTTGCGCATGAGTATGGTGGAAAGCCAGCTATTGCCTGC
AGCAGAGCGAGGCCAATCTCACCTGGTCAACCTATGGGAAAGAACAAGAG
TTTCAGGGCTTTTACAACTTGCTTTAATGTCAGTCACACTGACGCCAAGC
AGGAATCGAGCACGAAAGCTCAAAGAAGGAAGCGGAAATGTTCTCTTGAC
TCCGTGGTTTTCGACATTGTCCCAATCCCCAAGGTCCTTCCGGGAAGCCT
GCTTGAAAAAAGACGTAATCGGTCATGTCGGACACCGCACTGCACGAATC
GTTATCGAACGCCAGGGTATCTGTGCGAGGCTTGTGGTGGGGGTCGATGC
CAGGCGCGTGGCTGTGAGAGGCTTCATCAAGGAAAGCAGGGGCTGTCGAA
TCTCTTTTTCTGTCGGGCGCACCGCAATATTTATGCGCGTTTGCAAAAGG
AGGGAAAGGGAGGTGAAGAAAAAAAGTTGAAATGATGGAATGTAGGTGAA
GATACGGCAATTTCGGCAATTATGAAAATCACGATAGCCAAGGGGAGTAA
GAGCCTGGGTCGCTGAGGTTGCATCCCGTTGGTCTACCACCAAATTTAAT
GTGCAGTAACTTATGGATAGTCTCGACCACCAATCGATATGCGATGCTCA
CGAGTGGATGCAATAGTGTGCGTCTGTGTCCTGTTCCCGACATAGCAGAG
CTGTCTGTTGGTAGGAGTGCAAATAGTCAGATGCCCGAGTGTGTTGACCA
GAATGAATTGAATGCTTTCGGTAGCGTGGGCAGGCCTCCACTCAAAGTAT
AGGGTCCCCGAACAAGGTTGCGTCGTCTCTCTTTCCCAAGATGGACGGCT
TGTTGTGCATGACAGTGTGTCTCTGGGAAATGTTGCCGGAAACGGCTCTG
AATTAGGTCGAAGTCCTGTTTAGTCAGTAGGGCAAGGCTTGACTAATGAC
TTATGATGTTGTCAATTTGTGCCATACAGTTTTCATAAAGTTGGTGCCAG
ATTAACATGGCATGAACAAAATAATTTGAAATGATGCGAGACAACTACGA
ATGCGCACCAAAGAATAAAGCAAAATGTGTCCTGGACTGCACCT

Coding sequence (CDS) from alignment at KK037250.1:436164..438457-

>rna8903 ID=rna8903|Name=rna8903|organism=Nannochloropsis gaditana|type=CDS|length=1287bp|location=Sequence derived from alignment at KK037250.1:436164..438457- (Nannochloropsis gaditana)
ATGGACGGCGGTTTGCGTAGGCAAAGGAGGCAATGTCCCCTGTCTGCCAG
AGGCTTATCTCAGCATTACGAGCAATACATCGAAAGTCAACTGCCAAAAA
TGTGCATTAAGTTTGCCAGCGCCCATGATTCTCTCGCTCCTAGATCGTTT
CAGGAACATCAGGAGCGGGTGTCCGACCAGCTCGACTTCCGCCCAAGTGC
TTACGACGACGGGCAGCAACAGCAGCTGCTGGTAATCACTATGGCTACTG
CGCAGGCCAAACCCGATGACCTCGCCCTCAACGACATGGCTTGTCCCAAA
TTTGATGGCGAAAGCAGCAGTTGCACCACCGAAGCGGCGGGCTCATCCAC
GAACGCAAGTTCCTGTGTTGTGCATGAACTCAAACGACAATCCACCGCTG
GCCGCCCGCATGGCAGTGTACAAGATGTAGCCGAAGGCACGACGGGGGAC
AGCCTGATGTTTCTGGAATCTCCACTTTCCATGGTCTCATTCGATGAGGG
TGATCTGGGTTCAGAGTGTCACAGCCTTCTTTGCGGGGAGGAGGCTTTCA
GTCTGGGCACTCCCGACAACTCGATTACCTGTGCCCTAGAAGGGTTCGCC
CGCGAGAGCCCGAAAAGCTGCCGTAGTTTCAATTATGATGCGAAGGGCAA
CATCACCACCTTCCGTGGCAGCAAGGGCTGCAAAACGAACAAAAGCATAA
AGAGCAGCTGCGTCACTTCCGGTATGTGTACGATTACAGGAGGTTTGCGA
AGCCCCTATGAAAGGGCCAAGGCGACAACTTGTCAGAATAAGCATGCTCC
CTCTAGTACTCCCCTTGCGCATGAGTATGGTGGAAAGCCAGCTATTGCCT
GCAGCAGAGCGAGGCCAATCTCACCTGGTCAACCTATGGGAAAGAACAAG
AGTTTCAGGGCTTTTACAACTTGCTTTAATGTCAGTCACACTGACGCCAA
GCAGGAATCGAGCACGAAAGCTCAAAGAAGGAAGCGGAAATGTTCTCTTG
ACTCCGTGGTTTTCGACATTGTCCCAATCCCCAAGGTCCTTCCGGGAAGC
CTGCTTGAAAAAAGACGTAATCGGTCATGTCGGACACCGCACTGCACGAA
TCGTTATCGAACGCCAGGGTATCTGTGCGAGGCTTGTGGTGGGGGTCGAT
GCCAGGCGCGTGGCTGTGAGAGGCTTCATCAAGGAAAGCAGGGGCTGTCG
AATCTCTTTTTCTGTCGGGCGCACCGCAATATTTATGCGCGTTTGCAAAA
GGAGGGAAAGGGAGGTGAAGAAAAAAAGTTGAAATGA

Synonyms

Publications